Crystal and molecular structure of the depsipeptide ionophore Hexadecaisoleucinomycin, cyclo‐[‐(D‐Ile‐L‐Lac‐L‐Ile‐D‐Hyi)4‐] (C80H136N8O24)

The crystal structure of a synthetic depsipeptide ionophore hexadecaisoleucinomycin, cyclo[‐(D‐Ile‐L‐Lac‐L‐Ile‐D‐Hyi)4‐] (C80H136N8O24), has been determined by single crystal x‐ray diffraction techniques. The crystals are orthorhombic, space group P212121, number of molecules per unit cell z = 4, and cell parameters a = 11.195, b = 17.853, c = 54.835 Å. The values of the standard ( R) and weighted ( Rw ) discrepancy factors after refinement are 0.122 and 0.135, respectively. The structure is characterized by an elongated bracelet form with a twofold axis of pseudosymmetry. It is stabilized by eight intramolecular 4 → 1 hydrogen bonds between the amide CO and NH groups. The ester carbonyls are directed toward the inside of the molecule, their oxygen atoms forming an ellipsoidal internal cavity. The side chains are located on the molecular periphery. The conformational states of hexadecaisoleucinomycin in solution are discussed in the light of the data obtained.

[1]  M. Woolfson Structure determination by the method of permutation syntheses , 1954 .

[2]  V. T. Ivanov,et al.  3 – The Cyclic Peptides: Structure, Conformation, and Function , 1982 .

[3]  H A Scheraga,et al.  Energy parameters in polypeptides. V. An empirical hydrogen bond potential function based on molecular orbital calculations. , 1972, The Journal of physical chemistry.

[4]  Jia‐Xing Yao,et al.  On the application of phase relationships to complex structures. XVIII. RANTAN–random MULTAN , 1981 .

[5]  D. Langs Translation vector functions based on a deconvolution of the Patterson function provided by transform methods , 1975 .

[6]  I. Karle Conformation of valinomycin in a triclinic crystal form. , 1975, Journal of the American Chemical Society.

[7]  M. Marraud,et al.  Conformational dependence of the vicinal proton coupling constant for the CαCβ bond in peptides , 1982 .

[8]  J. Flippen-Anderson,et al.  New conformation exhibiting near-threefold symmetry for uncomplexes valinomycin in crystals from dimethyl sulfoxide , 1988 .

[9]  R Balasubramanian,et al.  Potential functions for hydrogen bond interactions. I. A modified Lippincott-Schroeder potential function for NH, O interaction between peptide groups. , 1970, Biochimica et biophysica acta.

[10]  V. Bystrov Spin—spin coupling and the conformational states of peptide systems , 1976 .

[11]  P. Taylor,et al.  Crystal environments and geometries of leucine, isoleucine, valine and phenylalanine provide estimates of minimum nonbonded contact and preferred van der Waals interaction distances , 1985 .

[12]  V. T. Ivanov,et al.  The crystal and molecular structure of cyclo‐[‐(D‐Val‐Hyi‐Val‐D‐Hyi)3‐] (meso‐valinomycin, C60H102N6O18) , 1979 .

[13]  Molecular conformation of a D,L stereoisomeric analogue of valinomycin, cyclo[‐(L‐Val‐L‐Hyi‐L‐Val‐D‐Hyi)2‐(D‐Val‐L‐Hyi‐L‐Val‐D‐Hyi)‐] , 1991, Biopolymers.

[14]  J. W. Edmonds,et al.  The crystal and molecular structure of the triclinic and monoclinic forms of valinomycin, C54H90N6O18. , 1975, Journal of the American Chemical Society.

[15]  M. Dobler Ionophores and Their Structures , 1981 .

[16]  W. Pangborn,et al.  Molecular conformation and ion transport of cyclic and linear ionophores. , 1989, Journal of molecular graphics.

[17]  William L. Duax,et al.  Crystal and molecular structure of isoleucinomycin, cyclo[‐(D‐Ile‐Lac‐Ile‐D‐Hyi)3‐](C60H102N6O18) , 1980 .