The Staphylococcus aureus extracellular adherence protein (Eap) adopts an elongated but structured conformation in solution

The extracellular adherence protein (Eap) of Staphylococcus aureus participates in a wide range of protein–protein interactions that facilitate the initiation and dissemination of Staphylococcal disease. In this report, we describe the use of a multidisciplinary approach to characterize the solution structure of full‐length Eap. In contrast to previous reports suggesting that a six‐domain isoform of Eap undergoes multimerization, sedimentation equilibrium analytical ultracentrifugation data revealed that a four‐domain isoform of Eap is a monomer in solution. In vitro proteolysis and solution small angle X‐ray scattering studies both indicate that Eap adopts an extended conformation in solution, where the linkers connecting sequential EAP modules are solvent exposed. Construction of a low‐resolution model of full‐length Eap using a combination of ab initio deconvolution of the SAXS data and rigid body modeling of the EAP domain crystal structure suggests that full‐length Eap may present several unique concave surfaces capable of participating in ligand binding. These results also raise the possibility that such surfaces may be held together by additional interactions between adjacent EAP modules. This hypothesis is supported by a comparative Raman spectroscopic analysis of full‐length Eap and a stoichiometric solution of the individual EAP modules, which indicates the presence of additional secondary structure and a greater extent of hydrogen/deuterium exchange protection in full‐length Eap. Our results provide the first insight into the solution structure of full‐length Eap and an experimental basis for interpreting the EAP domain crystal structures within the context of the full‐length molecule. They also lay a foundation for future studies into the structural and molecular bases of Eap‐mediated protein–protein interactions with its many ligands.

[1]  NW Leslie,et al.  Interpretation , 1989, Veterinary Record.

[2]  M. Kinter,et al.  Proteomic Analysis of Oxidative Stress-resistant Cells , 2004, Molecular & Cellular Proteomics.

[3]  P. Prevelige,et al.  Mechanism of capsid maturation in a double-stranded DNA virus. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[4]  N. Sherman,et al.  Protein Sequencing and Identification Using Tandem Mass Spectrometry: Kinter/Tandem Mass Spectrometry , 2000 .

[5]  G. Thomas,et al.  Raman Spectroscopy of Proteins , 2003, Current protocols in protein science.

[6]  E. Brown,et al.  The Staphylococcus aureus Map protein is an immunomodulator that interferes with T cell-mediated responses. , 2002, The Journal of clinical investigation.

[7]  M. Kanehisa,et al.  Whole genome sequencing of meticillin-resistant Staphylococcus aureus , 2001, The Lancet.

[8]  J. E. Godfrey,et al.  Digestion of fibrinogen by trypsin. I. Kinetic studies of the reaction. , 1963, Biochimica et biophysica acta.

[9]  K. Preissner,et al.  Staphylococcus aureus interactions with the endothelium , 2005, Thrombosis and Haemostasis.

[10]  A. Leach Molecular Modelling: Principles and Applications , 1996 .

[11]  M. Hammel,et al.  Structural flexibility of the N-terminal beta-barrel domain of 15-lipoxygenase-1 probed by small angle X-ray scattering. Functional consequences for activity regulation and membrane binding. , 2004, Journal of molecular biology.

[12]  D. Svergun,et al.  CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates , 1995 .

[13]  N. Guex,et al.  SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling , 1997, Electrophoresis.

[14]  Gerald J Wyckoff,et al.  Virtual polymorphism: finding divergent peptide matches in mass spectrometry data. , 2007, Analytical chemistry.

[15]  Hongmin Li,et al.  Crystal structure of a T-cell receptor β-chain complexed with a superantigen , 1996, Nature.

[16]  M. Pop,et al.  An optimized system for expression and purification of secreted bacterial proteins. , 2006, Protein expression and purification.

[17]  K. Preissner,et al.  Suppression of experimental autoimmune encephalomyelitis by extracellular adherence protein of Staphylococcus aureus , 2006, The Journal of experimental medicine.

[18]  K. Preissner,et al.  Staphylococcus aureus extracellular adherence protein serves as anti-inflammatory factor by inhibiting the recruitment of host leukocytes , 2002, Nature Medicine.

[19]  John I. Clark,et al.  Shotgun identification of protein modifications from protein complexes and lens tissue , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[20]  A. Namane,et al.  Protein sequencing and identification using tandem mass spectrometry. Edited by Michael Kinter, Nicholas E. Sherman, published by Wiley-Interscience Series on Mass Spectrometry, 2000, 301 p. , 2002 .

[21]  Paul R. Carey,et al.  Biochemical Applications of Raman and Resonance Raman Spectroscopies , 1982 .

[22]  J. Flock,et al.  Evidence for three different fibrinogen-binding proteins with unique properties from Staphylococcus aureus strain Newman. , 1992, Microbial pathogenesis.

[23]  M. Höök,et al.  Staphylococcus aureus Expresses a Major Histocompatibility Complex Class II Analog (*) , 1995, The Journal of Biological Chemistry.

[24]  R. Liskamp,et al.  The structure of the C5a receptor-blocking domain of chemotaxis inhibitory protein of Staphylococcus aureus is related to a group of immune evasive molecules. , 2005, Journal of molecular biology.

[25]  B. Sinha,et al.  The adhesive and immunomodulating properties of the multifunctional Staphylococcus aureus protein Eap. , 2003, Microbiology.

[26]  M. Höök,et al.  MSCRAMM-mediated adherence of microorganisms to host tissues. , 1994, Annual review of microbiology.

[27]  O. Glatter,et al.  19 – Small-Angle X-ray Scattering , 1973 .

[28]  P. Prevelige,et al.  A helical coat protein recognition domain of the bacteriophage P22 scaffolding protein. , 1998, Journal of molecular biology.

[29]  J. Flock,et al.  Rebinding of Extracellular Adherence Protein Eap toStaphylococcus aureus Can Occur through a Surface-Bound Neutral Phosphatase , 2001, Journal of bacteriology.

[30]  Adam Zemla,et al.  The Crystal Structures of EAP Domains from Staphylococcus aureus Reveal an Unexpected Homology to Bacterial Superantigens* , 2005, Journal of Biological Chemistry.

[31]  D I Svergun,et al.  Determination of domain structure of proteins from X-ray solution scattering. , 2001, Biophysical journal.

[32]  John E. Coligan,et al.  Current Protocols in Protein Science , 1996 .

[33]  Dmitri I. Svergun,et al.  Determination of the regularization parameter in indirect-transform methods using perceptual criteria , 1992 .

[34]  T. Terwilliger,et al.  Raman spectroscopy of the Ff gene V protein and complexes with poly(dA): nonspecific DNA recognition and binding. , 1996, Biochemistry.

[35]  K. Plaxco,et al.  Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins. , 2002, Advances in protein chemistry.

[36]  A. Norrby-Teglund,et al.  Extracellular Adherence Protein from Staphylococcus aureus Enhances Internalization into Eukaryotic Cells , 2003, Infection and Immunity.

[37]  B. Cookson Whole genome sequencing of methicillin resistant Staphylococcus aureus , 2001 .

[38]  J. E. Godfrey,et al.  Digestion of fibrinogen by trypsin. II. Characterization of the large fragment obtained. , 1963, Biochimica et biophysica acta.

[39]  E. Brown,et al.  Identification and Characterization of the C3 Binding Domain of the Staphylococcus aureus Extracellular Fibrinogen-binding Protein (Efb)* , 2004, Journal of Biological Chemistry.

[40]  G. Peters,et al.  Insertional Inactivation of eap in Staphylococcus aureus Strain Newman Confers Reduced Staphylococcal Binding to Fibroblasts , 2002, Infection and Immunity.

[41]  H. Augustin,et al.  The extracellular adherence protein (Eap) of Staphylococcus aureus inhibits wound healing by interfering with host defense and repair mechanisms. , 2006, Blood.

[42]  M. Höök,et al.  Identification of a Staphylococcus aureus extracellular matrix-binding protein with broad specificity , 1993, Infection and immunity.

[43]  Alexander D. MacKerell,et al.  All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.

[44]  M. Palma,et al.  Adherence of Staphylococcus aureus Is Enhanced by an Endogenous Secreted Protein with Broad Binding Activity , 1999, Journal of bacteriology.

[45]  M. Karplus,et al.  CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .

[46]  K. Acharya,et al.  Superantigens as immunomodulators: recent structural insights. , 1997, Structure.

[47]  Daniel Ricklin,et al.  A structural basis for complement inhibition by Staphylococcus aureus , 2007, Nature Immunology.

[48]  G. Thomas Raman spectroscopy of protein and nucleic acid assemblies. , 1999, Annual review of biophysics and biomolecular structure.

[49]  R. Tuma,et al.  Mechanisms of virus assembly probed by Raman spectroscopy: the icosahedral bacteriophage P22. , 1997, Biophysical chemistry.

[50]  Jeremy C. Smith,et al.  Structural Basis of Cellulosome Efficiency Explored by Small Angle X-ray Scattering* , 2005, Journal of Biological Chemistry.

[51]  Dmitri I. Svergun,et al.  Uniqueness of ab initio shape determination in small-angle scattering , 2003 .

[52]  Dmitri I. Svergun,et al.  Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering , 2007 .

[53]  James L Cole,et al.  Analysis of heterogeneous interactions. , 2004, Methods in enzymology.

[54]  A. Conde Staphylococcus aureus infections. , 1998, The New England journal of medicine.