The Role of Palmitoylation for Protein Recruitment to the Inner Membrane Complex of the Malaria Parasite*

Background: Recruitment of peripheral proteins to the inner membrane complex (IMC) of the malaria parasite can be mediated by N-terminal acylation. Results: Characterization of substrate determinants and identification of an IMC-localized palmitoyl acyltransferase PfDHHC1. Conclusion: Residues close to palmitoylation sites interfere with specific IMC recruitment. PfDHHC1 represents an apicomplexan-specific PAT. Significance: Dissection of palmitoylation for protein recruitment to the inner membrane complex in P. falciparum. To survive and persist within its human host, the malaria parasite Plasmodium falciparum utilizes a battery of lineage-specific innovations to invade and multiply in human erythrocytes. With central roles in invasion and cytokinesis, the inner membrane complex, a Golgi-derived double membrane structure underlying the plasma membrane of the parasite, represents a unique and unifying structure characteristic to all organisms belonging to a large phylogenetic group called Alveolata. More than 30 structurally and phylogenetically distinct proteins are embedded in the IMC, where a portion of these proteins displays N-terminal acylation motifs. Although N-terminal myristoylation is catalyzed co-translationally within the cytoplasm of the parasite, palmitoylation takes place at membranes and is mediated by palmitoyl acyltransferases (PATs). Here, we identify a PAT (PfDHHC1) that is exclusively localized to the IMC. Systematic phylogenetic analysis of the alveolate PAT family reveals PfDHHC1 to be a member of a highly conserved, apicomplexan-specific clade of PATs. We show that during schizogony this enzyme has an identical distribution like two dual-acylated, IMC-localized proteins (PfISP1 and PfISP3). We used these proteins to probe into specific sequence requirements for IMC-specific membrane recruitment and their interaction with differentially localized PATs of the parasite.

[1]  M. Meissner,et al.  The inner membrane complex through development of Toxoplasma gondii and Plasmodium , 2014, Cellular microbiology.

[2]  Anna Tramontano,et al.  Critical assessment of methods of protein structure prediction (CASP) — round x , 2014, Proteins.

[3]  Edward W. Tate,et al.  Unique apicomplexan IMC sub-compartment proteins are early markers for apical polarity in the malaria parasite , 2013, Biology Open.

[4]  R. Quiroga,et al.  Zinc co-ordination by the DHHC cysteine-rich domain of the palmitoyltransferase Swf1. , 2013, The Biochemical journal.

[5]  J. Parkinson,et al.  The apicomplexan inner membrane complex. , 2013, Frontiers in bioscience.

[6]  J. Rayner,et al.  Global Analysis of Apicomplexan Protein S-Acyl Transferases Reveals an Enzyme Essential for Invasion , 2013, Traffic.

[7]  T. Gilberger,et al.  The Toxoplasma protein ARO mediates the apical positioning of rhoptry organelles, a prerequisite for host cell invasion. , 2013, Cell host & microbe.

[8]  M. Linder,et al.  Mechanism and function of DHHC S‐Acyltransferases , 2013, Biochemical Society transactions.

[9]  I. Coppens,et al.  A Toxoplasma Palmitoyl Acyl Transferase and the Palmitoylated Armadillo Repeat Protein TgARO Govern Apical Rhoptry Tethering and Reveal a Critical Role for the Rhoptries in Host Cell Invasion but Not Egress , 2013, PLoS pathogens.

[10]  Eileen Kraemer,et al.  EuPathDB: The Eukaryotic Pathogen database , 2012, Nucleic Acids Res..

[11]  T. Gilberger,et al.  Dissection of Minimal Sequence Requirements for Rhoptry Membrane Targeting in the Malaria Parasite , 2012, Traffic.

[12]  Jyoti S. Choudhary,et al.  Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis , 2012, Cell host & microbe.

[13]  P. Bradley,et al.  Toxoplasma ISP4 is a central IMC sub-compartment protein whose localization depends on palmitoylation but not myristoylation. , 2012, Molecular and biochemical parasitology.

[14]  P. Bradley,et al.  Purification, crystallization and preliminary X-ray diffraction analysis of inner membrane complex (IMC) subcompartment protein 1 (ISP1) from Toxoplasma gondii. , 2012, Acta crystallographica. Section F, Structural biology and crystallization communications.

[15]  A. Holder,et al.  Subcellular Location, Phosphorylation and Assembly into the Motor Complex of GAP45 during Plasmodium falciparum Schizont Development , 2012, PloS one.

[16]  John Parkinson,et al.  Evolution and architecture of the inner membrane complex in asexual and sexual stages of the malaria parasite. , 2012, Molecular biology and evolution.

[17]  Maxim Teslenko,et al.  MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.

[18]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[19]  Michele Magrane,et al.  UniProt Knowledgebase: a hub of integrated protein data , 2011, Database J. Biol. Databases Curation.

[20]  L. Tilley,et al.  Tracking Glideosome-Associated Protein 50 Reveals the Development and Organization of the Inner Membrane Complex of Plasmodium falciparum , 2011, Eukaryotic Cell.

[21]  Graham Scott,et al.  The numbers game. , 2010, Nursing standard (Royal College of Nursing (Great Britain) : 1987).

[22]  Karine Frénal,et al.  Functional dissection of the apicomplexan glideosome molecular architecture. , 2010, Cell host & microbe.

[23]  P. Bradley,et al.  A Novel Family of Toxoplasma IMC Proteins Displays a Hierarchical Organization and Functions in Coordinating Parasite Division , 2010, PLoS pathogens.

[24]  P. Bastiaens,et al.  The Palmitoylation Machinery Is a Spatially Organizing System for Peripheral Membrane Proteins , 2010, Cell.

[25]  Richard Bartfai,et al.  A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology , 2010, PLoS pathogens.

[26]  Zbynek Bozdech,et al.  Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum , 2010, Nature Biotechnology.

[27]  Shaun S. Sanders,et al.  Neuronal palmitoyl acyl transferases exhibit distinct substrate specificity , 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[28]  C. Ungermann,et al.  Analysis of DHHC Acyltransferases Implies Overlapping Substrate Specificity and a Two‐Step Reaction Mechanism , 2009, Traffic.

[29]  J. M. Peregrín-Alvarez,et al.  The origins of apicomplexan sequence innovation. , 2009, Genome research.

[30]  Christopher J. Tonkin,et al.  A Novel Family of Apicomplexan Glideosome-associated Proteins with an Inner Membrane-anchoring Role , 2009, The Journal of Biological Chemistry.

[31]  Toni Gabaldón,et al.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..

[32]  D. Zacharias,et al.  Palmitoyl acyltransferases, their substrates, and novel assays to connect them (Review) , 2009, Molecular membrane biology.

[33]  T. Gilberger,et al.  Host-cell invasion by malaria parasites: insights from Plasmodium and Toxoplasma. , 2008, Trends in parasitology.

[34]  Robert D. Finn,et al.  InterPro: the integrative protein signature database , 2008, Nucleic Acids Res..

[35]  S. Perkins,et al.  A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches. , 2008, Molecular phylogenetics and evolution.

[36]  H. Stunnenberg,et al.  Characterization of a Conserved Rhoptry-Associated Leucine Zipper-Like Protein in the Malaria Parasite Plasmodium falciparum , 2008, Infection and Immunity.

[37]  S. Sharp,et al.  Improved synchronous production of Plasmodium falciparum gametocytes in vitro. , 2007, Molecular and biochemical parasitology.

[38]  A. Bailey,et al.  Palmitoylated proteins: purification and identification , 2007, Nature Protocols.

[39]  R. Guigó,et al.  Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia , 2006, Nature.

[40]  T. Gilberger,et al.  A Conserved Region in the EBL Proteins Is Implicated in Microneme Targeting of the Malaria Parasite Plasmodium falciparum* , 2006, Journal of Biological Chemistry.

[41]  William H. Majoros,et al.  Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote , 2006, PLoS biology.

[42]  Adam Godzik,et al.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..

[43]  J. Yates,et al.  Global Analysis of Protein Palmitoylation in Yeast , 2006, Cell.

[44]  R. Deschenes,et al.  Thematic review series: Lipid Posttranslational Modifications. Protein palmitoylation by a family of DHHC protein S-acyltransferases Published, JLR Papers in Press, April 1, 2006. , 2006, Journal of Lipid Research.

[45]  A. Kihara,et al.  Intracellular localization and tissue-specific distribution of human and yeast DHHC cysteine-rich domain-containing proteins. , 2006, Biochimica et biophysica acta.

[46]  Thomas J Naughton,et al.  Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified , 2006, BMC Evolutionary Biology.

[47]  A. Cowman,et al.  Invasion of Red Blood Cells by Malaria Parasites , 2006, Cell.

[48]  Matthias Marti,et al.  Re-defining the Golgi complex in Plasmodium falciparum using the novel Golgi marker PfGRASP , 2005, Journal of Cell Science.

[49]  Chuong B. Do,et al.  ProbCons: Probabilistic consistency-based multiple sequence alignment. , 2005, Genome research.

[50]  L. Dietrich,et al.  On the mechanism of protein palmitoylation , 2004, EMBO reports.

[51]  D. Soldati,et al.  The glideosome: a molecular machine powering motility and host-cell invasion by Apicomplexa. , 2004, Trends in cell biology.

[52]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[53]  J. Derisi,et al.  The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum , 2003, PLoS biology.

[54]  R. Deschenes,et al.  Identification of a Ras Palmitoyltransferase in Saccharomyces cerevisiae * , 2002, The Journal of Biological Chemistry.

[55]  Linyi Chen,et al.  The yeast DHHC cysteine-rich domain protein Akr1p is a palmitoyl transferase , 2002, The Journal of cell biology.

[56]  Martin Vingron,et al.  TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing , 2002, Bioinform..

[57]  P. Wright,et al.  Zinc finger proteins: new insights into structural and functional diversity. , 2001, Current opinion in structural biology.

[58]  A. Krogh,et al.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.

[59]  A. Holder,et al.  Characterization of N-myristoyltransferase from Plasmodium falciparum. , 2000, The Biochemical journal.

[60]  D. Fidock,et al.  Transformation with human dihydrofolate reductase renders malaria parasites insensitive to WR99210 but does not affect the intrinsic activity of proguanil. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[61]  Manfred J. Sippl,et al.  Thirty years of environmental health research--and growing. , 1996, Nucleic Acids Res..

[62]  T. Cavalier-smith,et al.  Kingdom protozoa and its 18 phyla. , 1993, Microbiological reviews.

[63]  E. Erbe,et al.  Plasmodium falciparum: freeze-fracture of the gametocyte pellicular complex. , 1987, Experimental parasitology.

[64]  W. Trager,et al.  Human malaria parasites in continuous culture. , 1976, Science.

[65]  Tal Pupko,et al.  Improving the performance of positive selection inference by filtering unreliable alignment regions. , 2012, Molecular biology and evolution.

[66]  O. Gascuel,et al.  Estimating maximum likelihood phylogenies with PhyML. , 2009, Methods in molecular biology.

[67]  C. Ball,et al.  Saccharomyces Genome Database. , 2002, Methods in enzymology.

[68]  C. Ball,et al.  SGD: Saccharomyces Genome Database , 1998, Nucleic Acids Res..

[69]  S. Bryant,et al.  Critical assessment of methods of protein structure prediction (CASP): Round II , 1997, Proteins.

[70]  C. Chuong,et al.  Article type Software , 2007 .