Towards a natural classification of Botryosphaeriales

[1]  B. Slippers,et al.  Five New Species of the Botryosphaeriaceae from Acacia Karroo in South Africa , 2012 .

[2]  P. Crous,et al.  The Colletotrichum acutatum species complex , 2012, Studies in mycology.

[3]  P. Crous,et al.  Phyllosticta species associated with freckle disease of banana , 2012, Fungal Diversity.

[4]  K. Hyde,et al.  Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2011 , 2012 .

[5]  P. Crous,et al.  The Colletotrichum boninense species complex , 2012, Studies in mycology.

[6]  K. D. Hyde,et al.  Phyllosticta ophiopogonis sp. nov. from Ophiopogon japonicus (Liliaceae). , 2012, Saudi journal of biological sciences.

[7]  K. Hyde,et al.  A reappraisal of Microthyriaceae , 2011, Fungal Diversity.

[8]  K. Hyde,et al.  Phyllosticta—an overview of current status of species recognition , 2011, Fungal Diversity.

[9]  K. Hyde,et al.  Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis , 2011, Fungal Diversity.

[10]  K. Hyde,et al.  Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. , 2011, Fungal Diversity.

[11]  T. Burgess,et al.  Use of the Genealogical Sorting Index (GSI) to delineate species boundaries in the Neofusicoccum parvum-Neofusicoccum ribis species complex. , 2011, Molecular phylogenetics and evolution.

[12]  S. Stephenson,et al.  From morphology to molecular biology: can we use sequence data to identify fungal endophytes? , 2011, Fungal Diversity.

[13]  T. Giraud,et al.  The evolution of species concepts and species recognition criteria in plant pathogenic fungi , 2011, Fungal Diversity.

[14]  A. Adesemoye,et al.  First Report of Spencermartinsia viticola, Neofusicoccum australe, and N. parvum Causing Branch Canker of Citrus in California. , 2011, Plant disease.

[15]  P. Crous,et al.  Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black Spot , 2011, Persoonia.

[16]  R. K. Striegler,et al.  Characterization of fungal pathogens associated with grapevine trunk diseases in Arkansas and Missouri , 2011, Fungal Diversity.

[17]  M. Tello,et al.  The endophytic mycota associated with Vitis vinifera in central Spain , 2011, Fungal Diversity.

[18]  J. Bell,et al.  Biodiversity of fungal endophyte communities inhabiting switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma , 2011, Fungal Diversity.

[19]  Mark A. Miller,et al.  Creating the CIPRES Science Gateway for inference of large phylogenetic trees , 2010, 2010 Gateway Computing Environments Workshop (GCE).

[20]  K. Hyde,et al.  A case for re-inventory of Australia’s plant pathogens , 2010, Persoonia : Molecular Phylogeny and Evolution of Fungi.

[21]  B. Summerell,et al.  Biogeography and phylogeography of Fusarium: a review , 2010, Fungal Diversity.

[22]  A. Phillips,et al.  Phylogeny and morphology of four new species of Lasiodiplodia from Iran , 2010, Persoonia.

[23]  K. Hyde,et al.  Phylogeny and morphology of Neodeightonia palmicola sp. nov. from palms. , 2010 .

[24]  A. Bentley,et al.  Fusarium species associated with plants in Australia , 2010, Fungal Diversity.

[25]  E. Jones,et al.  Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand , 2010, Fungal Diversity.

[26]  M. Wingfield,et al.  Endophytic and canker-associated Botryosphaeriaceae occurring on non-native Eucalyptus and native Myrtaceae trees in Uruguay , 2010, Fungal Diversity.

[27]  J. Guarro,et al.  Genotyping and in vitro antifungal susceptibility of Neoscytalidium dimidiatum isolates from different origins. , 2009, International journal of antimicrobial agents.

[28]  M. Wingfield,et al.  Molecular and phenotypic characterization of three phylogenetic species discovered within the Neofusicoccum parvum/N. ribis complex , 2009, Mycologia.

[29]  A. Phillips,et al.  Barriopsis iraniana and Phaeobotryon cupressi: two new species of the Botryosphaeriaceae from trees in Iran , 2009, Persoonia.

[30]  M. Wingfield,et al.  Multiple gene genealogies and phenotypic data reveal cryptic species of the Botryosphaeriaceae: a case study on the Neofusicoccum parvum/N. ribis complex. , 2009, Molecular phylogenetics and evolution.

[31]  David Hewitt,et al.  The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. , 2009, Systematic biology.

[32]  A. Phillips.  Taxonomy, phylogeny, and epitypification of Melanops tulasnei, the type species of Melanops , 2009 .

[33]  K. Hyde,et al.  Phyllosticta citriasiana sp. nov., the cause of Citrus tan spot of Citrus maxima in Asia , 2009 .

[34]  L. Wen.  Preliminary study on relationships of Dothideales and its allies , 2009 .

[35]  J. Spatafora,et al.  Molecular systematics of the marine Dothideomycetes , 2009, Studies in mycology.

[36]  Y. Zhang,et al.  A class-wide phylogenetic assessment of Dothideomycetes , 2009, Studies in mycology.

[37]  I. Gamundí.  Reseña de "Ainsworth & Bisby's Dictionary of Fungi" de Paul M. Kirk, Paul F. Cannon, David W. Minter y Stalpers Joost A. (eds.) , 2015 .

[38]  T. Burgess,et al.  Seven new species of the Botryosphaeriaceae from baobab and other native trees in Western Australia , 2008, Mycologia.

[39]  A. Alves,et al.  Morphology, phylogeny and pathogenicity of Botryosphaeria and Neofusicoccum species associated with drupe rot of olives in southern Italy , 2008 .

[40]  M. Wingfield,et al.  Species of Botryosphaeriaceae occurring on Proteaceae , 2008, Persoonia.

[41]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[42]  A. Arnold,et al.  Endomelanconiopsis, a new anamorph genus in the Botryosphaeriaceae , 2008, Mycologia.

[43]  P. Crous,et al.  Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae , 2008, Persoonia.

[44]  P. Crous,et al.  Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. , 2008 .

[45]  Alves,et al.  Phylogeny and morphology of Diplodia species on olives in southern Italy and description of Diplodia olivarum sp . nov , 2008 .

[46]  A. Phillips.  Phylogeny and morphology of Diplodia species on olives in southern Italy and description of Diplodia olivarum sp nov , 2008 .

[47]  M. Wingfield,et al.  Diseases of eucalypt plantations in China: challenges and opportunities , 2008 .

[48]  H. Corke,et al.  Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants , 2022 .

[49]  P. Crous,et al.  Botryosphaeriaceae as potential pathogens of Prunus species in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov. , 2007, Mycologia.

[50]  M. Wingfield,et al.  Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact , 2007 .

[51]  Michael Weiss,et al.  A higher-level phylogenetic classification of the Fungi. , 2007, Mycological research.

[52]  M. Wingfield,et al.  Taxonomy, phylogeny and identification of Botryosphaeriaceae associated with pome and stone fruit trees in South Africa and other regions of the world , 2007 .

[53]  M. Wingfield,et al.  Identification of Botryosphaeriaceae from Eucalyptus, Acacia and Pinus in Venezuela , 2007 .

[54]  P. Crous,et al.  Aplosporella prunicola, a novel species of anamorphic Botryosphaeriaceae , 2007 .

[55]  P. Crous,et al.  Diplodia seriata, the anamorph of "Botryosphaeria" obtusa , 2007 .

[56]  J. Spatafora,et al.  A multigene phylogeny of the Dothideomycetes using four nuclear loci , 2006 .

[57]  Marie-Christine Brun,et al.  TreeDyn: towards dynamic graphics and annotations for analyses of trees , 2006, BMC Bioinformatics.

[58]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[59]  T. Burgess,et al.  Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. , 2006, Mycologia.

[60]  W. Marasas,et al.  Phylogenetic lineages in the Botryosphaeriaceae , 2006, Studies in mycology.

[61]  A. Alves,et al.  Characterisation and epitypification of Botryosphaeria corticis, the cause of blueberry cane canker , 2006 .

[62]  K. Hyde,et al.  Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology. , 2006, Mycological research.

[63]  B. Rannala,et al.  Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference , 1996, Journal of Molecular Evolution.

[64]  M. Wingfield,et al.  Botryosphaeria species from Eucalyptus in Australia are pleoanamorphic, producing dichomera synanamorphs in culture. , 2005, Mycological research.

[65]  A. Alves,et al.  Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. , 2005, Mycologia.

[66]  T. Burgess,et al.  Development of simple sequence repeat markers for Botryosphaeria spp. with Fusicoccum anamorphs , 2004 .

[67]  M. Wingfield,et al.  Multiple gene sequences delimit Botryosphaeria australis sp. nov. from B. lutea. , 2004, Mycologia.

[68]  A. Alves,et al.  Botryosphaeria corticola, sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila. , 2004, Mycologia.

[69]  Jaa Nylander,et al.  MrModeltest 2.2. Program Distributed by the Author , 2004 .

[70]  P. Crous,et al.  Cultivation and diseases of Proteaceae: Leucadendron, Leucospermum and Protea , 2004 .

[71]  M. Wingfield,et al.  Speciation and distribution of Botryosphaeria spp. on native and introduced Eucalyptus trees in Australia and South Africa , 2004 .

[72]  M. Wingfield,et al.  Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. , 2004, Mycologia.

[73]  A. Phillips.  Taxonomy of Botryosphaeria melanops and its anamorph, Fusicoccum advenum , 2004 .

[74]  M. Wingfield,et al.  Lasiodiplodia gonubiensis sp. nov., a new Botryosphaeria anamorph from native Syzygium cordatum in South Africa , 2004 .

[75]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[76]  M. Wingfield,et al.  Circumscription of Botryosphaeria species associated with Proteaceae based on morphology and DNA sequence data. , 2003, Mycologia.

[77]  D. Swofford.  PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .

[78]  A. Phillips,et al.  A reassessment of the anamorphic fungus Fusicoccum luteum and description of its teleomorph Botryosphaeria lutea sp nov , 2002 .

[79]  Olga Zhaxybayeva,et al.  Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses , 2002, BMC Genomics.

[80]  John P. Huelsenbeck,et al.  MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..

[81]  S. Zhou,et al.  Relationships among Botryosphaeria species and associated anamorphic fungi inferred from the analyses of ITS and 5.8S rDNA sequences , 2001 .

[82]  M. Wingfield,et al.  Botryosphaeria eucalyptorum sp. nov., a new species in the B. dothidea-complex on Eucalyptus in South Africa , 2001 .

[83]  R. Hanlin,et al.  Illustrated Dictionary of Mycology , 2000 .

[84]  M. Wingfield,et al.  An overview of the taxonomic history of Botryosphaeria, and a re-evaluation of its anamorphs based on morphology and ITS rDNA phylogeny , 2000 .

[85]  K. Hyde,et al.  Genera of ascomycetes from palms , 2000 .

[86]  Ignazio Carbone,et al.  A method for designing primer sets for speciation studies in filamentous ascomycetes , 1999 .

[87]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[88]  P. Crous,et al.  Reassessment of the anamorph genera Botryodiplodia, Dothiorella and Fusicoccum , 1999 .

[89]  M. Wingfield,et al.  Taxonomic reassessment of Phyllachora proteae, a leaf pathogen of Proteaceae , 1999 .

[90]  K. Jacobs,et al.  Comparison of cultural and morphological characters and ITS sequences in anamorphs of Botryosphaeria and related taxa , 1998 .

[91]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[92]  Roderic D. M. Page,et al.  TreeView: an application to display phylogenetic trees on personal computers , 1996, Comput. Appl. Biosci..

[93]  M. Wingfield,et al.  Sphaeropsis sapinea and Botryosphaeria dothidea endophytic in Pinus spp. and Eucalyptus spp. in South Africa , 1996 .

[94]  N. L. Glass,et al.  Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes , 1995, Applied and environmental microbiology.

[95]  Joost A. Stalpers,et al.  Ainsworth and Bisby's dictionary of the fungi: 9th edition. , 1995 .

[96]  C. -. Chen,et al.  Sivanesania, a new botryosphaeriaceous ascomycete genus on Rubus from Taiwan , 1994 .

[97]  J. Bull,et al.  An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis , 1993 .

[98]  R. Vilgalys,et al.  Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species , 1990, Journal of bacteriology.

[99]  T. White.  Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .

[100]  J. A. Arx.  Plant Pathogenic Fungi , 1987 .

[101]  S. Pennycook,et al.  Botryosphaeria and Fusicoccum species associated with ripe fruit rot of Actinidia deliciosa (kiwifruit) in New Zealand. , 1985 .

[102]  A. Sivanesan.  The Bitunicate Ascomycetes and Their Anamorphs , 1984 .

[103]  O. Eriksson.  The families of bitunicate ascomycetes , 1981 .

[104]  E. Punithalingam.  Plant diseases attributed to Botryodiplodia theobromae Pat. , 1980 .

[105]  A. Sivanesan.  Redisposition and descriptions of some Amphisphaeria species and a note on Macrovalsaria , 1975 .

[106]  David L. Hawksworth,et al.  Ainsworth & Bisby's Dictionary of the Fungi , 1972 .

[107]  A. K. Kar,et al.  Leaf-inhabiting Pyrenomycetes of West Bengal (India) , 1971 .

[108]  E. Punithalingam.  Studies on Sphaeropsidales in culture , 1969 .

[109]  Franz von Höhnel.  Fragmente zur Mykologie , 1967 .

[110]  G. Ainsworth,et al.  The fungi : an advanced treatise , 1965 .

[111]  R. Shoemaker.  CONIDIAL STATES OF SOME BOTRYOSPHAERIA SPECIES ON VITIS AND QUERCUS , 1964 .

[112]  C. Booth.  Studies of Pyrenomycetes , 1958 .

[113]  J. A. Arx,et al.  Die Gattungen der amerosporen Pyrenomyceten , 1954 .

[114]  J. A. Arx,et al.  A re-evaluation of the bitunicate ascomycetes with keys to families and genera. , 1975 .

[115]  G. R. Bisby,et al.  List of pyrenomycetes recorded for Britain , 1940 .

[116]  N. E. Stevens.  Two species of Physalospora in England. , 1936 .

[117]  N. E. Stevens.  Two Species of Physalospora on Citrus and Other Hosts , 1926 .

[118]  E. M. Wakefield.  Fungi Exotici. XXVI , 1922 .

[119]  C. Spegazzini.  Hongos de la yerba mate , 1908 .

[120]  H. Rehm.  Beiträge zur Pilzflora von Südamerika. XII. Sphaeriales , 1901 .

[121]  Schweizerische Botanische Gesellschaft,et al.  Beiträge zur Kryptogamenflora der Schweiz. , 1898 .

[122]  Ida Clendenin.  Lasiodiplodia E. & E., n. gen , 1896, Botanical Gazette.

[123]  Ludwig Rabenhorst,et al.  Ascomyceten : Gymnoasceen und Pyrenomyceten , 1887 .

[124]  P. A. Saccardo.  Fungi Veneti novi vel critici v. mycologiae Veneti addendi. Series XII , 1881 .

[125]  Karl Wilhelm Gottlieb Leopold Fuckel.  Symbolae mycologicae : Beiträge zur Kenntniss der Rheinischen Pilze , 1869 .