Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.
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Vladimir B. Bajic | André Antunes | Magbubah Essack | Tareq B. Malas | Salim Bougouffa | Noor Azlin Mokhtar | Suhaiza Ahmad Jamhor | Intikhab Alam | Marta Filipa Simões | Hanin Alzubaidy | Olaa Motwalli | Frederick Kinyua Kamanu | S. Bougouffa | V. Bajic | A. Bokhari | M. Essack | J. Archer | Olaa Motwalli | I. Alam | André Antunes | Marta Filipa Simões | Feras F. Lafi | F. F. Lafi | John A.C. Archer | Ameerah Bokhari | H. Alzubaidy | N. Mokhtar | F. Kamanu | Frederick Kinyua Kamanu
[1] D. Chattopadhyay,et al. Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing , 2015, Microbial Ecology.
[2] G. Farquhar,et al. Growth responses of the mangrove Avicennia marina to salinity: development and function of shoot hydraulic systems require saline conditions. , 2015, Annals of botany.
[3] Paul Turner,et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses , 2014, BMC Biology.
[4] D. Chattopadhyay,et al. Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing , 2014, Microbial Ecology.
[5] X. Otero,et al. Archaeal diversity and the extent of iron and manganese pyritization in sediments from a tropical mangrove creek (Cardoso Island, Brazil) , 2014 .
[6] H. Almahasheer,et al. Metals Accumulation in Grey Mangrove (Avicennia marina (Forsk.) Vierh.) Inhabiting Tarut Bay, Eastern Saudi Arabia , 2013 .
[7] Vladimir B. Bajic,et al. INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles , 2013, PloS one.
[8] Susumu Goto,et al. Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..
[9] Sean R. Eddy,et al. Infernal 1.1: 100-fold faster RNA homology searches , 2013, Bioinform..
[10] Yuhuan Wu,et al. Effectsof potassium on organic acid metabolism of fe-sensitive and fe-resistant rices ('Oryza sativa' L.) , 2013 .
[11] M. Weiß,et al. Paracoccus denitrificans PD1222 Utilizes Hypotaurine via Transamination Followed by Spontaneous Desulfination To Yield Acetaldehyde and, Finally, Acetate for Growth , 2013, Journal of bacteriology.
[12] Sean R. Eddy,et al. Rfam 11.0: 10 years of RNA families , 2012, Nucleic Acids Res..
[13] Edward C. Uberbacher,et al. Gene and translation initiation site prediction in metagenomic sequences , 2012, Bioinform..
[14] Diego A. A. Chaves,et al. The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics , 2012, PloS one.
[15] Andreas Wilke,et al. The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools , 2012, BMC Bioinformatics.
[16] Andrew Macrae,et al. Microbial diversity in Brazilian mangrove sediments – a mini review , 2012, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].
[17] F. D. Andreote,et al. Interspecific variation of the bacterial community structure in the phyllosphere of the three major plant components of mangrove forests , 2012, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].
[18] J. Azevedo,et al. Archaeal communities in the sediments of three contrasting mangroves , 2011 .
[19] K. El-Tarabily,et al. Improved growth performance of the mangrove Avicennia marina seedlings using a 1-aminocyclopropane-1-carboxylic acid deaminase-producing isolate of Pseudoalteromonas maricaloris , 2011, Plant Growth Regulation.
[20] Rob Knight,et al. Examining the global distribution of dominant archaeal populations in soil , 2011, The ISME Journal.
[21] Alexandre S. Rosado,et al. Bioremediation of Mangroves Impacted by Petroleum , 2011 .
[22] Narmada Thanki,et al. CDD: a Conserved Domain Database for the functional annotation of proteins , 2010, Nucleic Acids Res..
[23] N. C. Gomes,et al. Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves , 2010, PloS one.
[24] Patrick J. Biggs,et al. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data , 2010, BMC Bioinformatics.
[25] J. D. Elsas,et al. Microbial community response to a simulated hydrocarbon spill in mangrove sediments , 2010, The Journal of Microbiology.
[26] Robert G. Beiko,et al. Identifying biologically relevant differences between metagenomic communities , 2010, Bioinform..
[27] R. G. Taketani,et al. Diversity and identification of methanogenic archaea and sulphate-reducing bacteria in sediments from a pristine tropical mangrove , 2010, Antonie van Leeuwenhoek.
[28] Tracy K. Teal,et al. Systematic artifacts in metagenomes from complex microbial communities , 2009, The ISME Journal.
[29] Robert D. Finn,et al. InterPro: the integrative protein signature database , 2008, Nucleic Acids Res..
[30] T. Itoh,et al. MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.
[31] T. Dittmar,et al. Organic carbon dynamics in mangrove ecosystems : a review , 2008 .
[32] A. Stams,et al. The ecology and biotechnology of sulphate-reducing bacteria , 2008, Nature Reviews Microbiology.
[33] J. G. Kuenen,et al. Competition and coexistence of sulfate-reducing bacteria, acetogens and methanogens in a lab-scale anaerobic bioreactor as affected by changing substrate to sulfate ratio , 2008, Applied Microbiology and Biotechnology.
[34] W. Ludwig,et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.
[35] A. Ellison,et al. A World Without Mangroves? , 2007, Science.
[36] David L. Valentine,et al. Opinion: Adaptations to energy stress dictate the ecology and evolution of the Archaea , 2007, Nature Reviews Microbiology.
[37] G. B. Golding,et al. The role of laterally transferred genes in adaptive evolution , 2007, BMC Evolutionary Biology.
[38] Yue-Qin Chen,et al. Recovery of novel bacterial diversity from mangrove sediment , 2007 .
[39] Philip Hugenholtz,et al. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes , 2006, Nucleic Acids Res..
[40] K. Sei,et al. Accelerated aromatic compounds degradation in aquatic environment by use of interaction between Spirodela polyrrhiza and bacteria in its rhizosphere. , 2006, Journal of bioscience and bioengineering.
[41] Naryttza N. Diaz,et al. The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes , 2005, Nucleic acids research.
[42] Mikako Takahoko,et al. How effective were mangroves as a defence against the recent tsunami? , 2005, Current Biology.
[43] Peter Schattner,et al. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs , 2005, Nucleic Acids Res..
[44] D. Lo Seen,et al. How effective were mangroves as a defence against the recent tsunami? , 2005, Current Biology.
[45] E. Rippey,et al. Coastal Plants: Perth and the South West Region , 2004 .
[46] Peter Millard,et al. Unravelling rhizosphere-microbial interactions: opportunities and limitations. , 2004, Trends in microbiology.
[47] A. M. Cook,et al. Enzymes and genes of taurine and isethionate dissimilation in Paracoccus denitrificans. , 2004, Microbiology.
[48] J. Davies,et al. Novel Pathway of Salicylate Degradation by Streptomyces sp. Strain WA46 , 2004, Applied and Environmental Microbiology.
[49] G. Yohe,et al. A globally coherent fingerprint of climate change impacts across natural systems , 2003, Nature.
[50] Alex Bateman,et al. InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites , 2002, Briefings Bioinform..
[51] D. Kirchman. The ecology of Cytophaga-Flavobacteria in aquatic environments. , 2002, FEMS microbiology ecology.
[52] J. Thomas-Oates,et al. Increased uptake of putrescine in the rhizosphere inhibits competitive root colonization by Pseudomonas fluorescens strain WCS365. , 2001, Molecular plant-microbe interactions : MPMI.
[53] Alex Bateman,et al. InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium : , 2005 .
[54] H. Rodríguez,et al. Phosphate solubilizing bacteria and their role in plant growth promotion. , 1999, Biotechnology advances.
[55] A. M. Cook,et al. Anaerobic oxidations of cysteate: degradation via L-cysteate:2-oxoglutarate aminotransferase in Paracoccus pantotrophus. , 1999, Microbiology.
[56] R. Howarth,et al. Soil-plant interactions in a neotropical mangrove forest: iron, phosphorus and sulfur dynamics , 1998, Oecologia.
[57] Peter J. Hogarth,et al. Aspects of mangal ecology along the Red Sea coast of Saudi Arabia , 1987 .
[58] B. Dicks. Oil and the black mangrove, Avicennia marina in the northern Red Sea , 1986 .
[59] H. Neue,et al. Effect of fertilization on exudation, dehydrogenase activity, iron-reducing populations and Fe++ formation in the rhizosphere of rice (Oryza sativa L.) in relation to iron toxicity , 1984, Plant and Soil.
[60] R. Oremland,et al. Methane production and simultaneous sulphate reduction in anoxic, salt marsh sediments , 1982 .
[61] 実森 宏. Paracoccus denitrificans. , 1979, Journal of bioenergetics and biomembranes.
[62] Walter E. Dean,et al. Determination of carbonate and organic matter in calcareous sediments and sedimentary rocks by loss on ignition; comparison with other methods , 1974 .
[63] G. Zheng,et al. Effect of exogenous potassium on photosynthesis and antioxidant enzymes of rice under iron toxicity , 2014, Russian Journal of Plant Physiology.
[64] M. A. Khan,et al. Distribution of Mangroves along the Red Sea Coast of the Arabian Peninsula: Part-I : the Northern Coast of Western Saudi Arabia , 2010 .
[65] E. Mcleod,et al. Managing mangroves for resilience to climate change , 2006 .
[66] M. Grant,et al. Plant responses to potassium deficiencies: a role for potassium transport proteins. , 2006, Journal of experimental botany.
[67] S. Fortuna,et al. Status and trends in mangrove area extent worldwide , 2003 .
[68] H. O. D. op den Camp,et al. Sulfate Reduction and Methanogenesis in Sediments of Mtoni Mangrove Forest, Tanzania , 2002, Ambio.
[69] Ross A. Overbeek,et al. The Ribosomal Database Project (RDP) , 1996, Nucleic Acids Res..
[70] M. Fouda,et al. Implications of climate change in the Red Sea and Gulf of Aden region: an overview , 1994 .
[71] Ying Huang,et al. Bioinformatics Applications Note Identification of Ribosomal Rna Genes in Metagenomic Fragments , 2022 .
[72] phylogenetic and functional analysis of metagenomes , 2022 .
[73] Anton McLachlan,et al. Estuarine , Coastal and Shelf Science , 2022 .