A survival mediation model with Bayesian model averaging

Determining the extent to which a patient is benefiting from cancer therapy is challenging. Criteria for quantifying the extent of “tumor response” observed within a few cycles of treatment have been established for various types of solids as well as hematologic malignancies. These measures comprise the primary endpoints of phase II trials. Regulatory approvals of new cancer therapies, however, are usually contingent upon the demonstration of superior overall survival with randomized evidence acquired with a phase III trial comparing the novel therapy to an appropriate standard of care treatment. With nearly two-thirds of phase III oncology trials failing to achieve statistically significant results, researchers continue to refine and propose new surrogate endpoints. This article presents a Bayesian framework for studying relationships among treatment, patient subgroups, tumor response, and survival. Combining classical components of a mediation analysis with Bayesian model averaging, the methodology is robust to model misspecification among various possible relationships among the observable entities. A posterior inference is demonstrated via an application to a randomized controlled phase III trial in metastatic colorectal cancer. Moreover, the article details posterior predictive distributions of survival and statistical metrics for quantifying the extent of direct and indirect, or tumor response mediated treatment effects.

[1]  Tyler J VanderWeele,et al.  Causal Mediation Analysis With Survival Data , 2011, Epidemiology.

[2]  D. Sargent,et al.  Biomarkers and surrogate end points—the challenge of statistical validation , 2010, Nature Reviews Clinical Oncology.

[3]  Adrian E. Raftery,et al.  Bayesian Model Averaging: A Tutorial , 2016 .

[4]  Vivek Subbiah,et al.  Defining Clinical Response Criteria and Early Response Criteria for Precision Oncology: Current State-of-the-Art and Future Perspectives , 2017, Diagnostics.

[5]  B. Qaqish,et al.  Multivariate logistic models , 2006 .

[6]  Kristopher J Preacher,et al.  Moderated Mediation Analysis Using Bayesian Methods , 2015 .

[7]  J. Byrd,et al.  iwCLL guidelines for diagnosis, indications for treatment, response assessment, and supportive management of CLL. , 2018, Blood.

[8]  Vincent G. Duffy,et al.  Total quality management: An empirical test for mediation effect , 2001 .

[9]  Mediation Analysis for Censored Survival Data Under an Accelerated Failure Time Model , 2016, Epidemiology.

[10]  P. McCullagh,et al.  Multivariate Logistic Models , 1995 .

[11]  Wasserman,et al.  Bayesian Model Selection and Model Averaging. , 2000, Journal of mathematical psychology.

[12]  D. A. Kenny,et al.  The moderator-mediator variable distinction in social psychological research: conceptual, strategic, and statistical considerations. , 1986, Journal of personality and social psychology.

[13]  R. Pazdur,et al.  Seamless Oncology-Drug Development. , 2016, The New England journal of medicine.

[14]  Daniel J Sargent,et al.  A randomized controlled trial of fluorouracil plus leucovorin, irinotecan, and oxaliplatin combinations in patients with previously untreated metastatic colorectal cancer. , 2004, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[15]  M J Daniels,et al.  Meta-analysis for the evaluation of potential surrogate markers. , 1997, Statistics in medicine.

[16]  J. Woodcock,et al.  Master Protocols to Study Multiple Therapies, Multiple Diseases, or Both. , 2017, The New England journal of medicine.

[17]  Tyler J VanderWeele,et al.  Mediation analysis for a survival outcome with time‐varying exposures, mediators, and confounders , 2017, Statistics in medicine.

[18]  B. Hobbs,et al.  Statistical challenges posed by uncontrolled master protocols: sensitivity analysis of the vemurafenib study , 2018, Annals of oncology : official journal of the European Society for Medical Oncology.

[19]  Bradley P Carlin,et al.  COMBINING NONEXCHANGEABLE FUNCTIONAL OR SURVIVAL DATA SOURCES IN ONCOLOGY USING GENERALIZED MIXTURE COMMENSURATE PRIORS. , 2015, The annals of applied statistics.

[20]  Hwai I. Yang,et al.  Causal Mediation Analysis of Survival Outcome with Multiple Mediators , 2017, Epidemiology.

[21]  Keith R Abrams,et al.  Bayesian hierarchical meta‐analytic methods for modeling surrogate relationships that vary across treatment classes using aggregate data , 2019, Statistics in medicine.

[22]  Eric J. Tchetgen Tchetgen,et al.  On causal mediation analysis with a survival outcome. , 2011 .

[23]  Adrian E. Raftery,et al.  Bayesian model averaging: a tutorial (with comments by M. Clyde, David Draper and E. I. George, and a rejoinder by the authors , 1999 .

[24]  David P. MacKinnon,et al.  A General Model for Testing Mediation and Moderation Effects , 2009, Prevention Science.

[25]  Tiago M. Fragoso,et al.  Bayesian Model Averaging: A Systematic Review and Conceptual Classification , 2015, 1509.08864.

[26]  S. West,et al.  A comparison of methods to test mediation and other intervening variable effects. , 2002, Psychological methods.

[27]  Richard D Riley,et al.  Bayesian meta‐analytical methods to incorporate multiple surrogate endpoints in drug development process , 2015, Statistics in medicine.

[28]  A. Abernethy,et al.  Real‐world progression, treatment, and survival outcomes during rapid adoption of immunotherapy for advanced non–small cell lung cancer , 2019, Cancer.

[29]  G. Rosner,et al.  Seamless Designs: Current Practice and Considerations for Early-Phase Drug Development in Oncology , 2018, Journal of the National Cancer Institute.

[30]  M. van Glabbeke,et al.  New guidelines to evaluate the response to treatment in solid tumors , 2000, Journal of the National Cancer Institute.

[31]  Brian P Hobbs,et al.  Adaptive adjustment of the randomization ratio using historical control data , 2013, Clinical trials.

[32]  Michèle B. Nuijten,et al.  A default Bayesian hypothesis test for mediation , 2015, Behavior research methods.

[33]  S. Khozin,et al.  Generating Real-World Tumor Burden Endpoints from Electronic Health Record Data: Comparison of RECIST, Radiology-Anchored, and Clinician-Anchored Approaches for Abstracting Real-World Progression in Non-Small Cell Lung Cancer , 2019, bioRxiv.

[34]  B. Hobbs,et al.  Histology-agnostic drug development — considering issues beyond the tissue , 2020, Nature Reviews Clinical Oncology.

[35]  D. Russell,et al.  Advances in testing the statistical significance of mediation effects. , 2006 .

[36]  L. Schwartz,et al.  New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1). , 2009, European journal of cancer.

[37]  Surrogate marker analysis in cancer clinical trials through time-to-event mediation techniques , 2018, Statistical methods in medical research.

[38]  R J Carroll,et al.  On meta-analytic assessment of surrogate outcomes. , 2000, Biostatistics.

[39]  Kristopher J Preacher,et al.  Testing Multilevel Mediation Using Hierarchical Linear Models , 2008 .

[40]  Bradley P Carlin,et al.  Flexible Bayesian survival modeling with semiparametric time-dependent and shape-restricted covariate effects. , 2016, Bayesian analysis.

[41]  Ying Yuan,et al.  Bayesian mediation analysis. , 2009, Psychological methods.

[42]  J. Koopmeiners,et al.  Basket Designs: Statistical Considerations for Oncology Trials. , 2019, JCO precision oncology.

[43]  P. Green Reversible jump Markov chain Monte Carlo computation and Bayesian model determination , 1995 .

[44]  Generating real-world tumor burden endpoints from electronic health record data: Comparison of RECIST, radiology-anchored, and clinician-anchored approaches for abstracting real-world progression in non-small cell lung cancer , 2019 .

[45]  R. Beckman,et al.  Adaptive Design for a Confirmatory Basket Trial in Multiple Tumor Types Based on a Putative Predictive Biomarker , 2016, Clinical pharmacology and therapeutics.

[46]  D. Rubin,et al.  Inference from Iterative Simulation Using Multiple Sequences , 1992 .

[47]  D. Dunson,et al.  Bayesian Multivariate Logistic Regression , 2004, Biometrics.

[48]  N A Wages,et al.  Statistical controversies in clinical research: early-phase adaptive design for combination immunotherapies , 2017, Annals of oncology : official journal of the European Society for Medical Oncology.

[49]  D.,et al.  Regression Models and Life-Tables , 2022 .