Developing Comprehensive Computational Parameter Sets To Describe the Performance of Pyridine-Oxazoline and Related Ligands

The applicability of computational descriptors extracted from metal pyridine-oxazoline complexes to relate both site and enantioselectivity to structural diversity was investigated. A group of computationally derived features (e.g., metal NBO charges, steric descriptors, torsion angles) were acquired for a library of pyridine-oxazoline ligands. Correlation studies were employed to examine steric/electronic features described by each descriptor, followed by application of the said descriptors in modeling the results of two reaction types, the site-selective redox-relay Heck reaction and the enantioselective Carroll rearrangement, affording simple, well-validated models. Through experimental validation and extrapolation, parameters derived from ground state metal complexes were found to be advantageous over those from the free ligand.

[1]  Jason M. Lynam,et al.  Computational Discovery of Stable Transition-Metal Vinylidene Complexes , 2014 .

[2]  Gadi Rothenberg,et al.  Predictive modeling in homogeneous catalysis: a tutorial. , 2010, Chemical Society reviews.

[3]  Ralph Kühne,et al.  External Validation and Prediction Employing the Predictive Squared Correlation Coefficient Test Set Activity Mean vs Training Set Activity Mean , 2008, J. Chem. Inf. Model..

[4]  W. R. Wadt,et al.  Ab initio effective core potentials for molecular calculations , 1984 .

[5]  Frank Weinhold,et al.  Natural bond orbital methods , 2012 .

[6]  B. Stoltz,et al.  A scalable synthesis of the (S)-4-(tert-butyl)-2-(pyridin-2-yl)-4,5-dihydrooxazole ((S)-t-BuPyOx) ligand , 2013, Beilstein journal of organic chemistry.

[7]  Clark R. Landis,et al.  Valency and Bonding: Author index , 2005 .

[8]  Zhi-Min Chen,et al.  Palladium-Catalyzed Enantioselective Redox-Relay Heck Arylation of 1,1-Disubstituted Homoallylic Alcohols. , 2016, Journal of the American Chemical Society.

[9]  F. Weigend,et al.  Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy. , 2005, Physical chemistry chemical physics : PCCP.

[10]  Matthew S Sigman,et al.  Multidimensional steric parameters in the analysis of asymmetric catalytic reactions. , 2012, Nature chemistry.

[11]  M. Sigman,et al.  On the mechanism of the palladium-catalyzed tert-butylhydroperoxide-mediated Wacker-type oxidation of alkenes using quinoline-2-oxazoline ligands. , 2011, Journal of the American Chemical Society.

[12]  Frank Glorius,et al.  Contemporary screening approaches to reaction discovery and development. , 2014, Nature chemistry.

[13]  Matthew S. Sigman,et al.  Alkenyl carbonyl derivatives in enantioselective redox relay Heck reactions: accessing α,β-unsaturated systems. , 2015, Journal of the American Chemical Society.

[14]  K. W. Jung,et al.  Asymmetric intermolecular heck-type reaction of acyclic alkenes via oxidative palladium(II) catalysis. , 2007, Organic letters.

[15]  J. Lacour,et al.  An enantioselective CpRu-catalyzed Carroll rearrangement. , 2007, Angewandte Chemie.

[16]  Gadi Rothenberg,et al.  Ligand Descriptor Analysis in Nickel‐Catalysed Hydrocyanation: A Combined Experimental and Theoretical Study , 2005 .

[17]  Clark R. Landis,et al.  Valency and Bonding: Contents , 2005 .

[18]  M. White,et al.  A general and highly selective chelate-controlled intermolecular oxidative Heck reaction. , 2008, Journal of the American Chemical Society.

[19]  T. Mei,et al.  Enantioselective redox-relay oxidative heck arylations of acyclic alkenyl alcohols using boronic acids. , 2013, Journal of the American Chemical Society.

[20]  Manfred T Reetz,et al.  New methods for the high-throughput screening of enantioselective catalysts and biocatalysts. , 2002, Angewandte Chemie.

[21]  Bing Li,et al.  Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c5sc04751j , 2016, Chemical science.

[22]  Anat Milo,et al.  Interrogating selectivity in catalysis using molecular vibrations , 2014, Nature.

[23]  Natalie Fey The contribution of computational studies to organometallic catalysis: descriptors, mechanisms and models. , 2010, Dalton transactions.

[24]  S. Stahl,et al.  Enantioselective Pd(II)-catalyzed aerobic oxidative amidation of alkenes and insights into the role of electronic asymmetry in pyridine-oxazoline ligands. , 2011, Organic letters.

[25]  James M. Rondinelli,et al.  Theory-Guided Machine Learning in Materials Science , 2016, Front. Mater..

[26]  Davide Ballabio,et al.  Evaluation of model predictive ability by external validation techniques , 2010 .

[27]  S. Stahl,et al.  Reconciling the stereochemical course of nucleopalladation with the development of enantioselective wacker-type cyclizations. , 2012, Angewandte Chemie.

[28]  M. Sigman,et al.  Development and investigation of a site selective palladium-catalyzed 1,4-difunctionalization of isoprene using pyridine–oxazoline ligands , 2014, Chemical science.

[29]  M. Sigman,et al.  A general and efficient catalyst system for a Wacker-type oxidation using TBHP as the terminal oxidant: application to classically challenging substrates. , 2009, Journal of the American Chemical Society.

[30]  David B. Rorabacher,et al.  Statistical treatment for rejection of deviant values: critical values of Dixon's "Q" parameter and related subrange ratios at the 95% confidence level , 1991 .

[31]  M. Muldoon,et al.  Cationic palladium(II) complexes as catalysts for the oxidation of terminal olefins to methyl ketones using hydrogen peroxide. , 2015 .

[32]  F. E. Grubbs Sample Criteria for Testing Outlying Observations , 1950 .

[33]  A. Guy Orpen,et al.  Statistical Modeling of a Ligand Knowledge Base , 2006, J. Chem. Inf. Model..

[34]  J. Habbema,et al.  Internal validation of predictive models: efficiency of some procedures for logistic regression analysis. , 2001, Journal of clinical epidemiology.

[35]  B. Stokes,et al.  Palladium-catalyzed allylic cross-coupling reactions of primary and secondary homoallylic electrophiles. , 2012, Journal of the American Chemical Society.

[36]  Kevin Wu,et al.  Parameterization of phosphine ligands demonstrates enhancement of nickel catalysis via remote steric effects. , 2017, Nature chemistry.

[37]  S. Nolan,et al.  Percent buried volume for phosphine and N-heterocyclic carbene ligands: steric properties in organometallic chemistry. , 2010, Chemical communications.

[38]  Huw M. L. Davies,et al.  Using IR vibrations to quantitatively describe and predict site-selectivity in multivariate Rh-catalyzed C–H functionalization† †Electronic supplementary information (ESI) available: Experimental procedures, tabulated descriptors, and model development MATLAB commands. See DOI: 10.1039/c5sc00357a , 2015, Chemical science.

[39]  A. Tropsha,et al.  Beware of q2! , 2002, Journal of molecular graphics & modelling.

[40]  J. Schiffner,et al.  Enantioselective Fujiwara–Moritani Indole and Pyrrole Annulations Catalyzed by Chiral Palladium(II)–NicOx Complexes , 2010 .

[41]  Anat Milo,et al.  The Development of Multidimensional Analysis Tools for Asymmetric Catalysis and Beyond. , 2016, Accounts of chemical research.

[42]  Chun Zhang,et al.  Enantioselective Dehydrogenative Heck Arylations of Trisubstituted Alkenes with Indoles to Construct Quaternary Stereocenters. , 2015, Journal of the American Chemical Society.

[43]  Antonio G. De Crisci,et al.  Chemoselective Oxidation of Polyols with Chiral Palladium Catalysts , 2013 .

[44]  F. Dean Toste,et al.  Exploiting non-covalent π interactions for catalyst design , 2017, Nature.

[45]  Anat Milo,et al.  Developing a Modern Approach To Account for Steric Effects in Hammett-Type Correlations. , 2016, Journal of the American Chemical Society.

[46]  Eric N. Jacobsen,et al.  SCHIFF BASE CATALYSTS FOR THE ASYMMETRIC STRECKER REACTION IDENTIFIED AND OPTIMIZED FROM PARALLEL SYNTHETIC LIBRARIES , 1998 .

[47]  Luigi Cavallo,et al.  A Combined Experimental and Theoretical Study Examining the Binding of N-Heterocyclic Carbenes (NHC) to the Cp*RuCl (Cp* = η5-C5Me5) Moiety: Insight into Stereoelectronic Differences between Unsaturated and Saturated NHC Ligands , 2003 .

[48]  Gadi Rothenberg,et al.  Design and assembly of virtual homogeneous catalyst libraries - towards in silico catalyst optimisation , 2006 .

[49]  J. Topliss,et al.  Chance factors in studies of quantitative structure-activity relationships. , 1979, Journal of medicinal chemistry.

[50]  M. Sigman,et al.  Palladium-Catalyzed Enantioselective Intermolecular Coupling of Phenols and Allylic Alcohols. , 2016, Journal of the American Chemical Society.

[51]  M. Sigman,et al.  Palladium-catalyzed enantioselective Heck alkenylation of acyclic alkenols using a redox-relay strategy. , 2015, Journal of the American Chemical Society.

[52]  L. Curtiss,et al.  Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint , 1988 .

[53]  D. Linder,et al.  Enantioselective CpRu‐Catalyzed Carroll Rearrangement – Ligand and Metal Source Importance , 2008 .

[54]  O. Wiest,et al.  Mechanism, Reactivity, and Selectivity in Palladium-Catalyzed Redox-Relay Heck Arylations of Alkenyl Alcohols , 2014, Journal of the American Chemical Society.

[55]  B. Moore Principal component analysis in linear systems: Controllability, observability, and model reduction , 1981 .

[56]  M. Sigman,et al.  A highly selective and general palladium catalyst for the oxidative Heck reaction of electronically nonbiased olefins. , 2010, Journal of the American Chemical Society.

[57]  S. Grimme,et al.  A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. , 2010, The Journal of chemical physics.

[58]  Robert S. Paton,et al.  Correlating Reactivity and Selectivity to Cyclopentadienyl Ligand Properties in Rh(III)-Catalyzed C-H Activation Reactions: An Experimental and Computational Study. , 2017, Journal of the American Chemical Society.

[59]  M. Frisch,et al.  Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields , 1994 .

[60]  Paola Gramatica,et al.  The Importance of Being Earnest: Validation is the Absolute Essential for Successful Application and Interpretation of QSPR Models , 2003 .

[61]  F. Dean Toste,et al.  A data-intensive approach to mechanistic elucidation applied to chiral anion catalysis , 2015, Science.

[62]  W. R. Wadt,et al.  Ab initio effective core potentials for molecular calculations. Potentials for K to Au including the outermost core orbitals , 1985 .

[63]  Zhengxing Wu,et al.  Pd-catalyzed asymmetric aza-Wacker-type cyclization reaction of olefinic tosylamides , 2010 .

[64]  D. Linder,et al.  Lewis acid/CpRu dual catalysis in the enantioselective decarboxylative allylation of ketone enolates. , 2009, Organic & biomolecular chemistry.

[65]  Donald W. Marquardt,et al.  Comment: You Should Standardize the Predictor Variables in Your Regression Models , 1980 .

[66]  Manuel Urbano-Cuadrado,et al.  Predicting the enantioselectivity of the copper-catalysed cyclopropanation of alkenes by using quantitative quadrant-diagram representations of the catalysts. , 2012, Chemistry.

[67]  A. Orpen,et al.  Building ligand knowledge bases for organometallic chemistry: Computational description of phosphorus(III)-donor ligands and the metal–phosphorus bond , 2009 .

[68]  Frank Weinhold,et al.  Natural bond orbital analysis: A critical overview of relationships to alternative bonding perspectives , 2012, J. Comput. Chem..

[69]  Peter Dierkes,et al.  The bite angle makes the difference: a practical ligand parameter for diphosphine ligands , 1999 .

[70]  Jeremy N. Harvey,et al.  Computational descriptors for chelating P,P- and P,N-donor ligands , 2008 .

[71]  J. Rodgers,et al.  Thirteen ways to look at the correlation coefficient , 1988 .

[72]  Andrew J. Neel,et al.  Enantiodivergent Fluorination of Allylic Alcohols: Data Set Design Reveals Structural Interplay between Achiral Directing Group and Chiral Anion. , 2016, Journal of the American Chemical Society.

[73]  Anat Milo,et al.  Parameterization of phosphine ligands reveals mechanistic pathways and predicts reaction outcomes , 2016, Nature Chemistry.

[74]  E. N. Bess,et al.  Designer substrate library for quantitative, predictive modeling of reaction performance , 2014, Proceedings of the National Academy of Sciences.

[75]  P. V. Leeuwen,et al.  Bite angle effects in diphosphine metal catalysts: steric or electronic?Based on the presentation given at Dalton Discussion No. 5, 10?12th April 2003, Noordwijkerhout, The Netherlands. , 2003 .

[76]  A. Orpen,et al.  Development of a ligand knowledge base, part 1: computational descriptors for phosphorus donor ligands. , 2005, Chemistry.

[77]  K. Mikami,et al.  Super High Throughput Screening (SHTS) of Chiral Ligands and Activators: Asymmetric Activation of Chiral Diol-Zinc Catalysts by Chiral Nitrogen Activators for the Enantioselective Addition of Diethylzinc to Aldehydes. , 1999, Angewandte Chemie.

[78]  Leo A. Joyce,et al.  Palladium-catalyzed enantioselective Heck alkenylation of trisubstituted allylic alkenols: a redox-relay strategy to construct vicinal stereocenters , 2016, Chemical science.

[79]  T. Mei,et al.  Enantioselective Heck Arylations of Acyclic Alkenyl Alcohols Using a Redox-Relay Strategy , 2012, Science.

[80]  Clark R. Landis,et al.  NBO 6.0: Natural bond orbital analysis program , 2013, J. Comput. Chem..

[81]  O. Wiest,et al.  Investigating the Nature of Palladium Chain-Walking in the Enantioselective Redox-Relay Heck Reaction of Alkenyl Alcohols , 2014, The Journal of organic chemistry.

[82]  Matthew S Sigman,et al.  Predicting and optimizing asymmetric catalyst performance using the principles of experimental design and steric parameters , 2011, Proceedings of the National Academy of Sciences.