Single cell transcriptomics of neighboring hyphae of Aspergillus niger

[1]  A. Bekker.  Hyphal heterogeneity in Aspergillus niger , 2011 .

[2]  C. de Bekker,et al.  Heterogeneity of Aspergillus niger Microcolonies in Liquid Shaken Cultures , 2010, Applied and Environmental Microbiology.

[3]  S. Bodovitz,et al.  Single cell analysis: the new frontier in 'omics'. , 2010, Trends in biotechnology.

[4]  Catalin C. Barbacioru,et al.  mRNA-Seq whole-transcriptome analysis of a single cell , 2009, Nature Methods.

[5]  C. de Bekker,et al.  An enzyme cocktail for efficient protoplast formation in Aspergillus niger. , 2009, Journal of microbiological methods.

[6]  Numrin Thaitrong,et al.  Integrated microfluidic bioprocessor for single-cell gene expression analysis , 2008, Proceedings of the National Academy of Sciences.

[7]  D. Larson,et al.  Single-RNA counting reveals alternative modes of gene expression in yeast , 2008, Nature Structural &Molecular Biology.

[8]  O. Kuipers,et al.  Bistability, epigenetics, and bet-hedging in bacteria. , 2008, Annual review of microbiology.

[9]  T. Kasuga,et al.  And Comparative Genomics Approaches Using Mrna Profiling Neurospora Crassa Dissecting Colony Development of Supplemental Material , 2008 .

[10]  Bruce A. Fenderson,et al.  MOLECULAR BIOLOGY OF THE CELL, 5TH EDITION , 2008 .

[11]  B. Alberts,et al.  Molecular Biology of the Cell 4th edition , 2007 .

[12]  A. Conesa,et al.  Spatial Differentiation in the Vegetative Mycelium of Aspergillus niger , 2007, Eukaryotic Cell.

[13]  A. Mitchell,et al.  Microbial biofilms: e pluribus unum , 2007, Current Biology.

[14]  R. D. de Vries,et al.  Localization of protein secretion in fungal colonies using a novel culturing technique; the ring-plate system. , 2007, Journal of microbiological methods.

[15]  J. A. Roubos,et al.  Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 , 2007, Nature Biotechnology.

[16]  K. Kitamoto,et al.  Square-plate culture method allows detection of differential gene expression and screening of novel, region-specific genes in Aspergillus oryzae , 2006, Applied Microbiology and Biotechnology.

[17]  A. Ram,et al.  Hyphal differentiation in the exploring mycelium of Aspergillus niger , 2005, Molecular microbiology.

[18]  H. Wösten,et al.  In situ hybridisation in filamentous fungi using peptide nucleic acid probes. , 2004, Fungal genetics and biology : FG & B.

[19]  S. Osmani,et al.  Partial Nuclear Pore Complex Disassembly during Closed Mitosis in Aspergillus nidulans , 2004, Current Biology.

[20]  Ronald P. de Vries,et al.  A New Black Aspergillus Species, A. vadensis, Is a Promising Host for Homologous and Heterologous Protein Production , 2004, Applied and Environmental Microbiology.

[21]  John D. Storey,et al.  Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[22]  J. Rihel,et al.  Single-Cell Transcriptional Analysis of Neuronal Progenitors , 2003, Neuron.

[23]  T. Speed,et al.  Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.

[24]  P. Khatri,et al.  Global functional profiling of gene expression ? ? This work was funded in part by a Sun Microsystem , 2003 .

[25]  J. Visser,et al.  Regulation of the α-glucuronidase-encoding gene (aguA) from Aspergillus niger , 2002, Molecular Genetics and Genomics.

[26]  H. Winkler,et al.  The concentrations of stable RNA and ribosomes in Rickettsia prowazekii , 1994, Molecular microbiology.

[27]  M. Asther,et al.  In situ localization of the secretion of lignin peroxidases in colonies of Phanerochaete chrysosporium using a sandwiched mode of culture. , 1993, Journal of general microbiology.

[28]  S. Moukha,et al.  Localization of growth and secretion of proteins in Aspergillus niger. , 1991, Journal of general microbiology.

[29]  W. H. Mager,et al.  Transcriptional control of yeast ribosomal protein synthesis during carbon-source upshift. , 1987, Nucleic acids research.

[30]  D. Donovan,et al.  Transcriptional regulation of ribosomal proteins during a nutritional upshift in Saccharomyces cerevisiae , 1986, Molecular and cellular biology.

[31]  John W. Morgan,et al.  Chemical composition of Mars , 1979 .

[32]  E. Sturani,et al.  Regulation of RNA synthesis in Neurospora crassa. An analysis of a shift-up. , 1976, Experimental cell research.

[33]  C. Waldron,et al.  Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast , 1975, Journal of bacteriology.

[34]  L. Goldstein.  Stable nuclear RNA returns to post-division nuclei following release to the cytoplasm during mitosis. , 1974, Experimental cell research.

[35]  E. Sturani,et al.  Inhibition of ribosomal RNA synthesis during a shift-down transition of growth in Neurospora crassa. , 1973, Biochimica et biophysica acta.

[36]  R. D. de Vries,et al.  Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies. , 2011, Environmental microbiology.

[37]  J. Thiery,et al.  Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling , 2009 .

[38]  H. Mewes,et al.  The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. , 2004, Nucleic acids research.

[39]  T. Goosen,et al.  Transformation of Aspergillus niger using the homologous orotidine-5′-phosphate-decarboxylase gene , 2004, Current Genetics.

[40]  P. Pouwels,et al.  Development of a homologous transformation system for Aspergillus niger based on the pyrG gene , 2004, Molecular and General Genetics MGG.

[41]  P. Khatri,et al.  Global functional profiling of gene expression. , 2003, Genomics.

[42]  John D. Storey,et al.  Statistical Significance for Genome-Wide Studies , 2003 .

[43]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[44]  U. Rinas,et al.  GlaA Promoter Controlled Production of a Mutant Green Fluorescent Protein (S65T) by Recombinant Aspergillus niger during Growth on Defined Medium in Batch and Fed‐Batch Cultures , 1999, Biotechnology progress.

[45]  F. Neidhart.  Escherichia coli and Salmonella. , 1996 .

[46]  Sokal Rr,et al.  Biometry: the principles and practice of statistics in biological research 2nd edition. , 1981 .

[47]  F. James Rohlf,et al.  Biometry: The Principles and Practice of Statistics in Biological Research , 1969 .

[48]  T. Breit,et al.  Uva-dare (digital Academic Repository) Single Cell Transcriptomics of Neighboring Hyphae of Aspergillus Niger Single Cell Transcriptomics of Neighboring Hyphae of Aspergillus Niger , 2022 .