Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development

[1]  K. Keightley,et al.  SINGLE , 2020, Storying Relationships.

[2]  Yutaka Suzuki,et al.  Minor zygotic gene activation is essential for mouse preimplantation development , 2018, Proceedings of the National Academy of Sciences.

[3]  George Thomas,et al.  Ribosome biogenesis in cancer: new players and therapeutic avenues , 2017, Nature Reviews Cancer.

[4]  Jan M Skotheim,et al.  Zygotic Genome Activation in Vertebrates. , 2017, Developmental cell.

[5]  A. Hart,et al.  PLAG1 deficiency impairs spermatogenesis and sperm motility in mice , 2017, Scientific Reports.

[6]  A. Blasco,et al.  Correlated response in litter size components in rabbits selected for litter size variability , 2017, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

[7]  D. Trono,et al.  A family of double-homeodomain transcription factors regulates zygotic genome activation in placental mammals , 2017, Nature Genetics.

[8]  S. Linnarsson,et al.  Transcription activation of early human development suggests DUX4 as an embryonic regulator , 2017, bioRxiv.

[9]  R. Snell,et al.  Functional confirmation of PLAG1 as the candidate causative gene underlying major pleiotropic effects on body weight and milk characteristics , 2017, Scientific Reports.

[10]  S. X. Ge.  Exploratory bioinformatics investigation reveals importance of “junk” DNA in early embryo development , 2017, BMC Genomics.

[11]  Huijiang Gao,et al.  Multi-strategy genome-wide association studies identify the DCAF16-NCAPG region as a susceptibility locus for average daily gain in cattle , 2016, Scientific Reports.

[12]  Roland Eils,et al.  Complex heatmaps reveal patterns and correlations in multidimensional genomic data , 2016, Bioinform..

[13]  Rickard Sandberg,et al.  Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos , 2016, Cell.

[14]  J. Kere,et al.  Single-cell transcriptome analysis of endometrial tissue , 2016, Human reproduction.

[15]  L. Maquat,et al.  Retrotransposons as regulators of gene expression , 2016, Science.

[16]  W. V. D. Van de Ven,et al.  Emerging role of PLAG1 as a regulator of growth and reproduction. , 2016, The Journal of endocrinology.

[17]  Robert D. Finn,et al.  The Dfam database of repetitive DNA families , 2015, Nucleic Acids Res..

[18]  S. Linnarsson,et al.  Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development , 2015, Nature Communications.

[19]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[20]  Cole Trapnell,et al.  The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells , 2014, Nature Biotechnology.

[21]  Ruiqiang Li,et al.  Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells , 2013, Nature Structural &Molecular Biology.

[22]  S. Horvath,et al.  Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing , 2013, Nature.

[23]  F. Schenkel,et al.  Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height , 2013, BMC Genetics.

[24]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[25]  R. Behr,et al.  Importance of the pluripotency factor LIN28 in the mammalian nucleolus during early embryonic development , 2012, Development.

[26]  A. M. Barrio,et al.  Strong signatures of selection in the domestic pig genome , 2012, Proceedings of the National Academy of Sciences.

[27]  K. Niakan,et al.  Human pre-implantation embryo development , 2012, Development.

[28]  Juan Carlos Izpisua Belmonte,et al.  Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development , 2011, Development.

[29]  T. Baer,et al.  Non-invasive imaging of human embryos before embryonic genome activation predicts development to the blastocyst stage , 2010, Nature Biotechnology.

[30]  C. Glass,et al.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.

[31]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[32]  R. Shivdasani,et al.  Loss of the PlagL2 transcription factor affects lacteal uptake of chylomicrons. , 2007, Cell metabolism.

[33]  William Stafford Noble,et al.  Quantifying similarity between motifs , 2007, Genome Biology.

[34]  Eytan Domany,et al.  Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes , 2006, BMC Genomics.

[35]  Sudhansu K. Dey,et al.  Roadmap to embryo implantation: clues from mouse models , 2006, Nature Reviews Genetics.

[36]  M. Brodsky,et al.  A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors , 2005, Nature Biotechnology.

[37]  W. V. D. Van de Ven,et al.  Targeted disruption of the murine Plag1 proto‐oncogene causes growth retardation and reduced fertility , 2004, Development, growth & differentiation.

[38]  Colin N. Dewey,et al.  Initial sequencing and comparative analysis of the mouse genome. , 2002 .

[39]  W. V. D. Van de Ven,et al.  The tumorigenic diversity of the three PLAG family members is associated with different DNA binding capacities. , 2002, Cancer research.

[40]  L. Nelson,et al.  Mater, a maternal effect gene required for early embryonic development in mice , 2000, Nature Genetics.

[41]  M. Azim Surani,et al.  Abnormal maternal behaviour and growth retardation associated with loss of the imprinted gene Mest , 1998, Nature Genetics.

[42]  K. Kas,et al.  Promoter swapping between the genes for a novel zinc finger protein and β-catenin in pleiomorphic adenomas with t(3;8)(p21;q12) translocations , 1997, Nature Genetics.

[43]  G. Stamp,et al.  Mice lacking cyclin D1 are small and show defects in eye and mammary gland development. , 1995, Genes & development.

[44]  M. Chidzonga,et al.  Pleomorphic adenoma of the salivary glands. Clinicopathologic study of 206 cases in Zimbabwe. , 1995, Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics.

[45]  N. Bruce,et al.  Spacing of fetuses and local competition in strains of mice with large, medium and small litters. , 1992, Journal of reproduction and fertility.

[46]  D. Labuda,et al.  Evolution of mouse B1 repeats: 7SL RNA folding pattern conserved , 1991, Journal of Molecular Evolution.

[47]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[48]  E. Ullu,et al.  Alu sequences are processed 7SL RNA genes , 1984, Nature.

[49]  C. Warner,et al.  In vivo and in vitro effect of α-amanitin on preimplantation mouse embryo RNA polymerase , 1974, Nature.

[50]  Sangya Pundir,et al.  UniProt Protein Knowledgebase. , 2017, Methods in molecular biology.

[51]  Wyeth W. Wasserman,et al.  JASPAR: an open-access database for eukaryotic transcription factor binding profiles , 2004, Nucleic Acids Res..

[52]  W. V. D. Van de Ven,et al.  PLAG1, the main translocation target in pleomorphic adenoma of the salivary glands, is a positive regulator of IGF-II. , 2000, Cancer research.

[53]  Michael Gribskov,et al.  Combining evidence using p-values: application to sequence homology searches , 1998, Bioinform..

[54]  Charles Elkan,et al.  Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.

[55]  C. Warner,et al.  In vivo and in vitro effect of alpha-amanitin on preimplantation mouse embryo RNA polymerase. , 1974, Nature.