Methanoplanus limicola DSM 2279T

Markus Göker, Megan Lu, Anne Fiebig, Matt Nolan, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Shanmugam Mayilraj, Manfred Rohde, John C. Detter, Boyke Bunk, Stefan Spring, Reinhard Wirth, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk

[1]  Hans-Peter Klenk,et al.  Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age. , 2014, International journal of systematic and evolutionary microbiology.

[2]  George Garrity,et al.  Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project , 2014, Standards in Genomic Sciences.

[3]  Natalia N. Ivanova,et al.  Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847) , 2014 .

[4]  J. Ruan.  [Bergey's Manual of Systematic Bacteriology (second edition) Volume 5 and the study of Actinomycetes systematic in China]. , 2013, Wei sheng wu xue bao = Acta microbiologica Sinica.

[5]  Hans-Peter Klenk,et al.  When should a DDH experiment be mandatory in microbial taxonomy? , 2013, Archives of Microbiology.

[6]  Timothy Lilburn,et al.  Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. , 2013, Systematic and applied microbiology.

[7]  Alexander F. Auch,et al.  Genome sequence-based species delimitation with confidence intervals and improved distance functions , 2013, BMC Bioinformatics.

[8]  Thomas S. Brettin,et al.  The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation , 2012, PloS one.

[9]  Lynne A. Goodwin,et al.  Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta , 2012, Standards in genomic sciences.

[10]  I-Min A. Chen,et al.  The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata , 2011, Nucleic Acids Res..

[11]  G. Garrity.  Bergey’s Manual® of Systematic Bacteriology , 2012, Springer New York.

[12]  G. Garrity,et al.  Judicial Commission of the International Committee on Systematics of ProkaryotesXIIth International (IUMS) Congress of Bacteriology and Applied Microbiology , 2011 .

[13]  Anton Güntsch,et al.  The DNA bank network: the start from a german initiative. , 2011, Biopreservation and biobanking.

[14]  Lynne A. Goodwin,et al.  Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T) , 2010, Standards in genomic sciences.

[15]  H. Klenk,et al.  En route to a genome-based classification of Archaea and Bacteria? , 2010, Systematic and applied microbiology.

[16]  Hans-Peter Klenk,et al.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison , 2010, Standards in genomic sciences.

[17]  Hans-Peter Klenk,et al.  Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs , 2010, Standards in genomic sciences.

[18]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[19]  N. Kyrpides,et al.  Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 , 2009, Standards in genomic sciences.

[20]  Eugene Goltsman,et al.  Complete genome sequence of Methanocorpusculum labreanum type strain Z , 2009, Standards in genomic sciences.

[21]  I-Min A. Chen,et al.  IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..

[22]  Natalia N. Ivanova,et al.  The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes , 2009, Standards in genomic sciences.

[23]  Sean D. Hooper,et al.  Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens , 2009, PloS one.

[24]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[25]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[26]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[27]  H. Oyaizu,et al.  Evaluation of Methanogenic Strains and Their Ability to Endure Aeration and Water Stress , 2008, Current Microbiology.

[28]  P. Forterre,et al.  Natural History of the Archaeal Domain , 2007 .

[29]  R. Garrett,et al.  Archaea : evolution, physiology, and molecular biology , 2007 .

[30]  H. G. Trüper.  The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, Sulfolobales, Thermococcales, Thermoproteales and Verrucomicrobiales are the genera Acholeplasma, Halanaerobium, Halobac , 2005, International journal of systematic and evolutionary microbiology.

[31]  W. Zillig,et al.  Taxonomic relations between archaebacteria including 6 novel genera examined by cross hybridization of DNAs and 16S rRNAs , 2005, Journal of Molecular Evolution.

[32]  G. Vogels,et al.  Isolation and characterization of Methanoplanus endosymbiosus sp. nov., an endosymbiont of the marine sapropelic ciliate Metopus contortus quennerstedt , 1986, Archives of Microbiology.

[33]  H. König,et al.  Methanoplanus limicola, a plate-shaped methanogen representing a novel family, the methanoplanaceae , 1982, Archives of Microbiology.

[34]  D. Swofford.  PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .

[35]  R. Amann,et al.  The species concept for prokaryotes. , 2013, FEMS microbiology reviews.

[36]  B. Tindall,et al.  Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an opinion. , 2001, International journal of systematic and evolutionary microbiology.

[37]  George M. Garrity,et al.  The Archaea and the deeply branching and phototrophic bacteria , 2001 .

[38]  R. Huber,et al.  Phylum All. Euryarchaeota phy. nov. , 2001 .

[39]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[40]  V. N. Ivanov,et al.  [Use of the level of G+C n DNA for studying the molecular phylogeny o f methanogenic archaebacteria]. , 1999, Mikrobiologiia.

[41]  B. Patel,et al.  Methanoplanus petrolearius sp. nov., a novel methanogenic bacterium from an oil-producing well. , 1997, FEMS microbiology letters.

[42]  M. Aguirre,et al.  Validation of the publication of new names and new combinations previously effectively published outside the IJSB. , 1996, International journal of systematic bacteriology.

[43]  E. Stackebrandt,et al.  METHANOLACINIA GEN. NOV., INCORPORATING METHANOMICROBIUM PAYNTERI AS METHANOLACINIA PAYNTERI COMB. NOV , 1989 .

[44]  Michael V. Thomas,et al.  Isolation and Characterization of Methanomicrobium paynteri sp. nov., a Mesophilic Methanogen Isolated from Marine Sediments , 1983, Applied and environmental microbiology.

[45]  A. Walsby,et al.  A square bacterium , 1980, Nature.

[46]  C. Woese,et al.  Methanogens: reevaluation of a unique biological group , 1979, Microbiological reviews.

[47]  R. E. Hungate,et al.  Characterization of Methanobacterium mobilis, sp. n., Isolated from the Bovine Rumen , 1968, Journal of bacteriology.