Automated identification of mitochondrial regions in complex intracellular space by texture analysis

Automated processing and quantification of biological images have been rapidly increasing the attention of researchers in image processing and pattern recognition because the roles of computerized image and pattern analyses are critical for new biological findings and drug discovery based on modern high-throughput and highcontent image screening. This paper presents a study of the automated detection of regions of mitochondria, which are a subcellular structure of eukaryotic cells, in microscopy images. The automated identification of mitochondria in intracellular space that is captured by the state-of-the-art combination of focused ion beam and scanning electron microscope imaging reported here is the first of its type. Existing methods and a proposed algorithm for texture analysis were tested with the real intracellular images. The high correction rate of detecting the locations of the mitochondria in a complex environment suggests the effectiveness of the proposed study.

[1]  Christophoros Nikou,et al.  Combining shape, texture and intensity features for cell nuclei extraction in Pap smear images , 2011, Pattern Recognit. Lett..

[2]  J. Sprott Chaos and time-series analysis , 2001 .

[3]  G. Matheron Principles of geostatistics , 1963 .

[4]  F. Cendes,et al.  Texture analysis of medical images. , 2004, Clinical radiology.

[5]  Xiaobo Zhou,et al.  Computational Prediction Models for Early Detection of Risk of Cardiovascular Events Using Mass Spectrometry Data , 2008, IEEE Transactions on Information Technology in Biomedicine.

[6]  Manfred Schroeder,et al.  Fractals, Chaos, Power Laws: Minutes From an Infinite Paradise , 1992 .

[7]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[8]  Clayton V. Deutsch,et al.  GSLIB: Geostatistical Software Library and User's Guide , 1993 .

[9]  H. Hastings Fractal geometry in biological systems: An analytical approach , 1997 .

[10]  T. D. Pham,et al.  Fusion of handwritten numeral classifiers based on fuzzy and genetic algorithms , 1997, 1997 Annual Meeting of the North American Fuzzy Information Processing Society - NAFIPS (Cat. No.97TH8297).

[11]  Alissa M. Weaver,et al.  Cortactin is an essential regulator of matrix metalloproteinase secretion and extracellular matrix degradation in invadopodia. , 2007, Cancer research.

[12]  Tuan D. Pham,et al.  Personalized identification of abdominal wall hernia meshes on computed tomography , 2014, Comput. Methods Programs Biomed..

[13]  Yan Huang,et al.  Medical image retrieval based on texture and shape feature co-occurrence , 2012, Medical Imaging.

[14]  Bailing Zhang,et al.  Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble , 2011, BMC Bioinformatics.

[15]  Michael Edward Hohn,et al.  An Introduction to Applied Geostatistics: by Edward H. Isaaks and R. Mohan Srivastava, 1989, Oxford University Press, New York, 561 p., ISBN 0-19-505012-6, ISBN 0-19-505013-4 (paperback), $55.00 cloth, $35.00 paper (US) , 1991 .