Bacterial Community Dynamics During Nursery Rearing of Pacific White Shrimp (Litopenaeus vannamei) Revealed via High-Throughput Sequencing

[1]  J. Xiong,et al.  Spatiotemporal successions of shrimp gut microbial colonization: high consistency despite distinct species pool , 2019, Environmental microbiology.

[2]  Yingfei Ma,et al.  Dynamics of the gut microbiota in developmental stages of Litopenaeus vannamei reveal its association with body weight , 2019, Scientific Reports.

[3]  C. Austin,et al.  Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management , 2018, PeerJ.

[4]  J. Xiong,et al.  Response of host–bacterial colonization in shrimp to developmental stage, environment and disease , 2018, Molecular ecology.

[5]  A. Ochoa‐Leyva,et al.  A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota , 2018, PeerJ.

[6]  A. Mendoza-Vargas,et al.  Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions , 2017, Scientific Reports.

[7]  J. Xiong,et al.  Integrating gut microbiota immaturity and disease‐discriminatory taxa to diagnose the initiation and severity of shrimp disease , 2017, Environmental microbiology.

[8]  P. Gatta state of world fisheries and aquaculture , 2017 .

[9]  Liping Wang,et al.  Changes in the intestinal bacterial community during the growth of white shrimp, Litopenaeus vannamei , 2016 .

[10]  Tao Xu,et al.  Comparison of cultivable bacterial communities associated with Pacific white shrimp (Litopenaeus vannamei) larvae at different health statuses and growth stages , 2016 .

[11]  Zhigang Zhou,et al.  Characterization of the intestinal microbiota in Pacific white shrimp, Litopenaeus vannamei, fed diets with different lipid sources , 2014 .

[12]  Yang Yu,et al.  Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei , 2014, PloS one.

[13]  J. Xiong,et al.  The application of bacterial indicator phylotypes to predict shrimp health status , 2014, Applied Microbiology and Biotechnology.

[14]  W. Rungrassamee,et al.  Characterization of Intestinal Bacteria in Wild and Domesticated Adult Black Tiger Shrimp (Penaeus monodon) , 2014, PloS one.

[15]  J. Xiong,et al.  Bacterioplankton assemblages as biological indicators of shrimp health status , 2014 .

[16]  J. Xiong,et al.  The Temporal Scaling of Bacterioplankton Composition: High Turnover and Predictability during Shrimp Cultivation , 2014, Microbial Ecology.

[17]  N. Gomes,et al.  Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis , 2013, PloS one.

[18]  T. Williams,et al.  The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics. , 2013, Environmental microbiology.

[19]  S. Tangphatsornruang,et al.  Bacterial Population in Intestines of the Black Tiger Shrimp (Penaeus monodon) under Different Growth Stages , 2013, PloS one.

[20]  K. Kormas,et al.  Gut bacteria associated with different diets in reared Nephrops norvegicus. , 2012, Systematic and applied microbiology.

[21]  Steven D. Essinger,et al.  Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis , 2012, Molecular ecology.

[22]  William A. Walters,et al.  Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms , 2012, The ISME Journal.

[23]  W. Rungrassamee,et al.  Bacterial Community Associated with the Intestinal Tract of P. monodon in Commercial Farms , 2012, Microbial Ecology.

[24]  Mei Liu,et al.  The intestinal microbial diversity in Chinese shrimp (Fenneropenaeus chinensis) as determined by PCR–DGGE and clone library analyses , 2011 .

[25]  William A. Walters,et al.  Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample , 2010, Proceedings of the National Academy of Sciences.

[26]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[27]  A. Suwanto,et al.  Bacterial communities associated with white shrimp (Litopenaeus vannamei) larvae at early developmental stages , 2010 .

[28]  P. L. Hertzler,et al.  Pleonal muscle development in the shrimp Penaeus (Litopenaeus) vannamei (Crustacea: Malacostraca: Decapoda: Dendrobranchiata). , 2009, Arthropod structure & development.

[29]  Yun-juan Chang,et al.  Microbial Community Analysis of Water, Foregut, and Hindgut during Growth of Pacific White Shrimp, Litopenaeus vannamei, in Closed‐System Aquaculture , 2008 .

[30]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[31]  Sherly Zacharia,et al.  Optimal salinity and temperature for early developmental stages of Penaeus merguiensis De man , 2004 .

[32]  J. Bowman,et al.  Biodiversity, Community Structural Shifts, and Biogeography of Prokaryotes within Antarctic Continental Shelf Sediment , 2003, Applied and Environmental Microbiology.

[33]  L. Owens,et al.  Bacterial flora from the gut of the wild and cultured banana prawn, Penaeus merguiensis , 2002, Journal of applied microbiology.

[34]  D. Kirchman The ecology of Cytophaga-Flavobacteria in aquatic environments. , 2002, FEMS microbiology ecology.

[35]  C. T. Achuthankutty,et al.  Bacterial flora associated with larval rearing of the giant freshwater prawn, Macrobrachium rosenbergii , 2002 .

[36]  M. Cottrell,et al.  Natural Assemblages of Marine Proteobacteria and Members of the Cytophaga-Flavobacter Cluster Consuming Low- and High-Molecular-Weight Dissolved Organic Matter , 2000, Applied and Environmental Microbiology.

[37]  F. A. Valle,et al.  Infectious disease in shrimp species with aquaculture potential , 2000 .

[38]  H. Urakawa,et al.  Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. , 1999, Microbiology.

[39]  J. Swings,et al.  Vibrios Associated with Litopenaeus vannamei Larvae, Postlarvae, Broodstock, and Hatchery Probionts , 1999, Applied and Environmental Microbiology.