Analysis of Sentinel-2 and RapidEye for Retrieval of Leaf Area Index in a Saltmarsh Using a Radiative Transfer Model

The Sentinel satellite fleet of the Copernicus Programme offers new potential to map and monitor plant traits at fine spatial and temporal resolutions. Among these traits, leaf area index (LAI) is a crucial indicator of vegetation growth and an essential variable in biodiversity studies. Numerous studies have shown that the radiative transfer approach has been a successful method to retrieve LAI from remote-sensing data. However, the suitability and adaptability of this approach largely depend on the type of remote-sensing data, vegetation cover and the ecosystem studied. Saltmarshes are important wetland ecosystems threatened by sea level rise among other human- and animal-induced changes. Therefore, monitoring their vegetation status is crucial for their conservation, yet few LAI assessments exist for these ecosystems. In this study, the retrieval of LAI in a saltmarsh ecosystem is examined using Sentinel-2 and RapidEye data through inversion of the PROSAIL radiative transfer model. Field measurements of LAI and some other plant traits were obtained during two succeeding field campaigns in July 2015 and 2016 on the saltmarsh of Schiermonnikoog, a barrier island of the Netherlands. RapidEye (2015) and Sentinel-2 (2016) data were acquired concurrent to the time of the field campaigns. The broadly employed PROSAIL model was inverted using two look-up tables (LUTs) generated in the spectral band’s settings of the two sensors and in which each contained 500,000 records. Different solutions from the LUTs, as well as, different Sentinel-2 spectral subsets were considered to examine the LAI retrieval. Our results showed that generally the LAI retrieved from Sentinel-2 had higher accuracy compared to RapidEye-retrieved LAI. Utilising the mean of the first 10 best solutions from the LUTs resulted in higher R2 (0.51 and 0.59) and lower normalised root means square error (NRMSE) (0.24 and 0.16) for both RapidEye and Sentinel-2 data respectively. Among different Sentinel-2 spectral subsets, the one comprised of the four near-infrared (NIR) and shortwave infrared (SWIR) spectral bands resulted in higher estimation accuracy (R2 = 0.44, NRMSE = 0.21) in comparison to using other studied spectral subsets. The results demonstrated the feasibility of broadband multispectral sensors, particularly Sentinel-2 for retrieval of LAI in the saltmarsh ecosystem via inversion of PROSAIL. Our results highlight the importance of proper parameterisation of radiative transfer models and capacity of Sentinel-2 spectral range and resolution, with impending high-quality global observation aptitude, for retrieval of plant traits at a global scale.

[1]  C. Bacour Design and analysis of numerical experiments to compare four canopy reflectance models , 2002 .

[2]  Clement Atzberger,et al.  Geostatistical regularization of inverse models for the retrieval of vegetation biophysical variables , 2009, Remote Sensing.

[3]  R. Richter,et al.  A unified approach to parametric geocoding and atmospheric/topographic correction for wide field-of-view airborne imagery Part 2: atmospheric / topographic correction , 2022 .

[4]  Xu Tongyu,et al.  Radiative transfer models (RTMs) for field phenotyping inversion of rice based on UAV hyperspectral remote sensing , 2017 .

[5]  C. A. Mücher,et al.  Environmental science: Agree on biodiversity metrics to track from space , 2015, Nature.

[6]  Andrew K. Skidmore,et al.  Mapping forest canopy nitrogen content by inversion of coupled leaf-canopy radiative transfer models from airborne hyperspectral imagery , 2018 .

[7]  W. Cohen,et al.  Lidar Remote Sensing of the Canopy Structure and Biophysical Properties of Douglas-Fir Western Hemlock Forests , 1999 .

[8]  A. Skidmore,et al.  Mapping grassland leaf area index with airborne hyperspectral imagery : a comparison study of statistical approaches and inversion of radiative transfer models , 2011 .

[9]  Roshanak Darvishzadeh,et al.  Inversion of a Radiative Transfer Model for Estimation of Rice Canopy Chlorophyll Content Using a Lookup-Table Approach , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[10]  Jan G. P. W. Clevers,et al.  Imaging Spectrometry in Agriculture - Plant Vitality And Yield Indicators , 1994 .

[11]  W. Verhoef Light scattering by leaf layers with application to canopy reflectance modeling: The Scattering by Arbitrarily Inclined Leaves (SAIL) model , 1984 .

[12]  Andrew K. Skidmore,et al.  Effects of Canopy Structural Variables on Retrieval of Leaf Dry Matter Content and Specific Leaf Area From Remotely Sensed Data , 2016, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[13]  S. Running,et al.  Synergistic algorithm for estimating vegetation canopy leaf area index and fraction of absorbed photosynthetically active , 1998 .

[14]  A. Skidmore,et al.  Leaf Area Index derivation from hyperspectral vegetation indicesand the red edge position , 2009 .

[15]  H. Olff,et al.  The effect of fluctuations in tidal inundation frequency on a salt-marsh vegetation , 1988, Vegetatio.

[16]  Fei Yang,et al.  Comparison of different methods for corn LAI estimation over northeastern China , 2012, Int. J. Appl. Earth Obs. Geoinformation.

[17]  Gary R. Watmough,et al.  Evaluating the capabilities of Sentinel-2 for quantitative estimation of biophysical variables in vegetation , 2013 .

[18]  Marco Heurich,et al.  Mapping leaf chlorophyll content from Sentinel-2 and RapidEye data in spruce stands using the invertible forest reflectance model , 2019, Int. J. Appl. Earth Obs. Geoinformation.

[19]  Wolfram Mauser,et al.  Optimal Exploitation of the Sentinel-2 Spectral Capabilities for Crop Leaf Area Index Mapping , 2012, Remote. Sens..

[20]  Jan G. P. W. Clevers,et al.  Using Hyperspectral Remote Sensing Data for Retrieving Canopy Chlorophyll and Nitrogen Content , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[21]  Yuri Knyazikhin,et al.  Retrieval of canopy biophysical variables from bidirectional reflectance Using prior information to solve the ill-posed inverse problem , 2003 .

[22]  Qijiang Zhu,et al.  Interception of PAR and relationship between FPAR and LAI in summer maize canopy , 2002, IEEE International Geoscience and Remote Sensing Symposium.

[23]  M. Cho,et al.  Towards red‐edge positions less sensitive to canopy biophysical parameters for leaf chlorophyll estimation using properties optique spectrales des feuilles (PROSPECT) and scattering by arbitrarily inclined leaves (SAILH) simulated data , 2008 .

[24]  N. Broge,et al.  Comparing prediction power and stability of broadband and hyperspectral vegetation indices for estimation of green leaf area index and canopy chlorophyll density , 2001 .

[25]  R. Colombo,et al.  Inversion of a radiative transfer model with hyperspectral observations for LAI mapping in poplar plantations , 2004 .

[26]  Raffaele Casa,et al.  Influence of acquisition time and resolution on wheat yield estimation at the field scale from canopy biophysical variables retrieved from SPOT satellite data , 2015 .

[27]  W. Verhoef,et al.  LAI estimation from canopy reflectance and WDVI: a sensivity analysis with the SAIL model. , 1991 .

[28]  C. Francone,et al.  Comparison of leaf area index estimates by ceptometer and PocketLAI smart app in canopies with different structures , 2014 .

[29]  H. Feilhauer,et al.  Are remotely sensed traits suitable for ecological analysis? A case study of long-term drought effects on leaf mass per area of wetland vegetation , 2018 .

[30]  K. Soudani,et al.  Calibration and validation of hyperspectral indices for the estimation of broadleaved forest leaf chlorophyll content, leaf mass per area, leaf area index and leaf canopy biomass , 2008 .

[31]  Roberta E. Martin,et al.  Airborne spectranomics: mapping canopy chemical and taxonomic diversity in tropical forests , 2009 .

[32]  A. Viña,et al.  Remote estimation of leaf area index and green leaf biomass in maize canopies , 2003 .

[33]  C. Atzberger,et al.  Spatially constrained inversion of radiative transfer models for improved LAI mapping from future Sentinel-2 imagery , 2012 .

[34]  R. Houborg,et al.  Mapping leaf chlorophyll and leaf area index using inverse and forward canopy reflectance modeling and SPOT reflectance data , 2008 .

[35]  H. V. Leeuwen,et al.  Modelling and synergetic use of optical and microwave remote sensing. Report 6: Radar backscatter modelling for synergetic use with optical remote sensing in the application to agricultural crops. , 1994 .

[36]  A. Gitelson,et al.  Joint leaf chlorophyll content and leaf area index retrieval from Landsat data using a regularized model inversion system (REGFLEC) , 2015 .

[37]  Clement Atzberger,et al.  Vegetation Structure Retrieval in Beech and Spruce Forests Using Spectrodirectional Satellite Data , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[38]  F. Baret,et al.  PROSPECT: A model of leaf optical properties spectra , 1990 .

[39]  Clement Atzberger,et al.  Evaluation of Sentinel-2 Spectral Sampling for Radiative Transfer Model Based LAI Estimation of Wheat, Sugar Beet, and Maize , 2011, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[40]  N. Breda Ground-based measurements of leaf area index: a review of methods, instruments and current controversies. , 2003, Journal of experimental botany.

[41]  S. Ustin,et al.  Estimating leaf biochemistry using the PROSPECT leaf optical properties model , 1996 .

[42]  G. D’Urso,et al.  Experimental assessment of the Sentinel-2 band setting for RTM-based LAI retrieval of sugar beet and maize , 2009 .

[43]  Frédéric Baret,et al.  Review of methods for in situ leaf area index determination Part I. Theories, sensors and hemispherical photography , 2004 .

[44]  Clement Atzberger,et al.  Derivation of biophysical variables from Earth observation data: validation and statistical measures , 2012 .

[45]  G. A. Blackburn,et al.  Remote sensing of forest pigments using airborne imaging spectrometer and LIDAR imagery , 2002 .

[46]  A. Skidmore,et al.  Spectral discrimination of vegetation types in a coastal wetland , 2003 .

[47]  H. Ren,et al.  Estimating aboveground green biomass in desert steppe using band depth indices , 2014 .

[48]  Onisimo Mutanga,et al.  High density biomass estimation for wetland vegetation using WorldView-2 imagery and random forest regression algorithm , 2012, Int. J. Appl. Earth Obs. Geoinformation.

[49]  Daniela Stroppiana,et al.  Exploitation of SAR and Optical Sentinel Data to Detect Rice Crop and Estimate Seasonal Dynamics of Leaf Area Index , 2017, Remote. Sens..

[50]  N. Pettorelli,et al.  Framing the concept of satellite remote sensing essential biodiversity variables: challenges and future directions , 2016 .

[51]  F. Baret,et al.  Leaf optical properties with explicit description of its biochemical composition: Direct and inverse problems , 1996 .

[52]  Clement Atzberger,et al.  Comparative analysis of different retrieval methods for mapping grassland leaf area index using airborne imaging spectroscopy , 2015, Int. J. Appl. Earth Obs. Geoinformation.

[53]  F. Baret,et al.  Review of methods for in situ leaf area index (LAI) determination: Part II. Estimation of LAI, errors and sampling , 2004 .

[54]  Marco Heurich,et al.  Spatially detailed retrievals of spring phenology from single-season high-resolution image time series , 2017, Int. J. Appl. Earth Obs. Geoinformation.

[55]  F. Baret,et al.  Assessing the biomass dynamics of Andean bofedal and totora high-protein wetland grasses from NOAA/AVHRR , 2003 .

[56]  S. T. Gower,et al.  Leaf area index of boreal forests: theory, techniques, and measurements , 1997 .

[57]  G. Asner Biophysical and Biochemical Sources of Variability in Canopy Reflectance , 1998 .

[58]  W. Verhoef Earth observation modelling based on layer scattering matrices , 1984 .

[59]  T. S. Prasad,et al.  Comparative analysis of red-edge hyperspectral indices , 2003 .

[60]  Ruxandra Vintila,et al.  Relationship between leaf area index, biomass and winter wheat yield obtained at Fundulea, under conditions of 2001 year , 2003 .

[61]  F. M. Danson,et al.  RED-EDGE RESPONSE TO FOREST LEAF-AREA INDEX (VOL 16, PG 183, 1995) , 1995 .

[62]  J. Moreno,et al.  Seasonal variations of leaf area index of agricultural fields retrieved from Landsat data , 2008 .

[63]  John Tulip,et al.  The RapidEye mission design , 2005 .

[64]  Junichi Imanishi,et al.  Detecting drought status and LAI of two Quercus species canopies using derivative spectra , 2004 .

[65]  Clement Atzberger,et al.  Estimation of vegetation LAI from hyperspectral reflectance data: Effects of soil type and plant architecture , 2008, Int. J. Appl. Earth Obs. Geoinformation.

[66]  Karl Fred Huemmrich,et al.  Remote Sensing of Forest Biophysical Structure Using Mixture Decomposition and Geometric Reflectance Models , 1995 .

[67]  Martha C. Anderson,et al.  Utility of an image-based canopy reflectance modeling tool for remote estimation of LAI and leaf chlorophyll content at the field scale , 2009 .

[68]  C. Atzberger Object-based retrieval of biophysical canopy variables using artificial neural nets and radiative transfer models , 2004 .

[69]  Bo-Hui Tang,et al.  Inversion of the PROSAIL model to estimate leaf area index of maize, potato, and sunflower fields from unmanned aerial vehicle hyperspectral data , 2014, Int. J. Appl. Earth Obs. Geoinformation.

[70]  Wolfram Mauser,et al.  Remote Sens , 2015 .

[71]  S. Ustin,et al.  Estimation of water-related biochemical and biophysical vegetation properties using multitemporal airborne hyperspectral data and its comparison to MODIS spectral response , 2014 .

[72]  S. Running,et al.  Regional‐Scale Relationships of Leaf Area Index to Specific Leaf Area and Leaf Nitrogen Content , 1994 .

[73]  A. Skidmore,et al.  Inversion of a radiative transfer model for estimating vegetation LAI and chlorophyll in a heterogeneous grassland , 2008 .

[74]  Lorenzo Busetto,et al.  A Critical Comparison of Remote Sensing Leaf Area Index Estimates over Rice-Cultivated Areas: From Sentinel-2 and Landsat-7/8 to MODIS, GEOV1 and EUMETSAT Polar System , 2018, Remote. Sens..

[75]  Hong Li,et al.  [Estimation of regional leaf area index by remote sensing inversion of PROSAIL canopy spectral model]. , 2009, Guang pu xue yu guang pu fen xi = Guang pu.

[76]  Wei He,et al.  Exploring optimal design of look-up table for PROSAIL model inversion with multi-angle MODIS data , 2012, Asia-Pacific Environmental Remote Sensing.

[77]  J. Privette,et al.  Inversion methods for physically‐based models , 2000 .

[78]  Clement Atzberger,et al.  Inverting the PROSAIL canopy reflectance model using neural nets trained on streamlined databases , 2010 .

[79]  Jan G. P. W. Clevers,et al.  Using Sentinel-2 Data for Retrieving LAI and Leaf and Canopy Chlorophyll Content of a Potato Crop , 2017, Remote. Sens..

[80]  A. Skidmore,et al.  Vegetation phenology from Sentinel-2 and field cameras for a Dutch barrier island , 2018, Remote Sensing of Environment.

[81]  Susan L. Ustin,et al.  Canopy structural attributes derived from AVIRIS imaging spectroscopy data in a mixed broadleaf/conifer forest , 2016 .

[82]  Aleixandre Verger,et al.  Optimal modalities for radiative transfer-neural network estimation of canopy biophysical characteristics: Evaluation over an agricultural area with CHRIS/PROBA observations , 2011 .

[83]  M. Vohland,et al.  Estimating structural and biochemical parameters for grassland from spectroradiometer data by radiative transfer modelling (PROSPECT+SAIL) , 2008 .

[84]  Terje Gobakken,et al.  Comparing regression methods in estimation of biophysical properties of forest stands from two different inventories using laser scanner data , 2005 .

[85]  Fabian Ewald Fassnacht,et al.  Linking plant strategies and plant traits derived by radiative transfer modelling , 2017 .

[86]  H. Olff,et al.  Ecosystem assembly rules: the interplay of green and brown webs during salt marsh succession. , 2012, Ecology.

[87]  Jan G. P. W. Clevers,et al.  Experimental Sentinel-2 LAI estimation using parametric, non-parametric and physical retrieval methods - A comparison , 2015 .

[88]  M. Schlerf,et al.  Suitability and adaptation of PROSAIL radiative transfer model for hyperspectral grassland studies , 2013 .

[89]  He Li,et al.  Comparative analysis of GF-1, HJ-1, and Landsat-8 data for estimating the leaf area index of winter wheat , 2017 .

[90]  F. M. Danson,et al.  Methods of sensitivity analysis in remote sensing: implications for canopy reflectance model inversion , 2003, IGARSS 2003. 2003 IEEE International Geoscience and Remote Sensing Symposium. Proceedings (IEEE Cat. No.03CH37477).

[91]  F. Baret,et al.  Improving canopy variables estimation from remote sensing data by exploiting ancillary information. Case study on sugar beet canopies , 2002 .

[92]  R. Giering,et al.  Application to MISR land products of an RPV model inversion package using adjoint and Hessian codes , 2007 .

[93]  Valero Laparra,et al.  Derivation of global vegetation biophysical parameters from EUMETSAT Polar System , 2018, 2012.05151.

[94]  Jan G. P. W. Clevers,et al.  Optical remote sensing and the retrieval of terrestrial vegetation bio-geophysical properties - A review , 2015 .

[95]  M. Schlerf,et al.  Inversion of a forest reflectance model to estimate structural canopy variables from hyperspectral remote sensing data , 2006 .

[96]  W. Verhoef,et al.  PROSPECT+SAIL models: A review of use for vegetation characterization , 2009 .

[97]  A. Skidmore,et al.  Red edge shift and biochemical content in grass canopies , 2007 .

[98]  José F. Moreno,et al.  Multiple Cost Functions and Regularization Options for Improved Retrieval of Leaf Chlorophyll Content and LAI through Inversion of the PROSAIL Model , 2013, Remote. Sens..

[99]  Emilio Chuvieco,et al.  Linking ecological information and radiative transfer models to estimate fuel moisture content in the Mediterranean region of Spain: Solving the ill-posed inverse problem , 2009 .

[100]  R. Casa,et al.  Retrieval of crop canopy properties: a comparison between model inversion from hyperspectral data and image classification , 2004 .

[101]  Hongliang Fang,et al.  Continuous estimation of canopy leaf area index (LAI) and clumping index over broadleaf crop fields: An investigation of the PASTIS-57 instrument and smartphone applications , 2018 .

[102]  B. Yoder,et al.  Predicting nitrogen and chlorophyll content and concentrations from reflectance spectra (400–2500 nm) at leaf and canopy scales , 1995 .

[103]  Weiwei Liu,et al.  Estimation and Mapping of Winter Oilseed Rape LAI from High Spatial Resolution Satellite Data Based on a Hybrid Method , 2017, Remote. Sens..

[104]  Yang Fei,et al.  Comparison of different methods for corn LAI estimation over northeastern China , 2012 .

[105]  J. Schjoerring,et al.  Reflectance measurement of canopy biomass and nitrogen status in wheat crops using normalized difference vegetation indices and partial least squares regression , 2003 .

[106]  R. Myneni,et al.  Investigation of a model inversion technique to estimate canopy biophysical variables from spectral and directional reflectance data , 2000 .

[107]  A. Kuusk The Hot Spot Effect in Plant Canopy Reflectance , 1991 .

[108]  F. Baret,et al.  Estimating Canopy Characteristics from Remote Sensing Observations: Review of Methods and Associated Problems , 2008 .

[109]  Zhihao Qin,et al.  Estimation of Crop LAI using hyperspectral vegetation indices and a hybrid inversion method , 2015 .

[110]  Wolfram Mauser,et al.  Evaluation of the PROSAIL Model Capabilities for Future Hyperspectral Model Environments: A Review Study , 2018, Remote. Sens..

[111]  S. Ollinger Sources of variability in canopy reflectance and the convergent properties of plants. , 2011, The New phytologist.

[112]  Yetao Li,et al.  Preliminary study on integrated wireless smart terminals for leaf area index measurement , 2016, Comput. Electron. Agric..