Semi-supervised learning for potential human microRNA-disease associations inference

[1]  Xia Li,et al.  Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes , 2013, BMC Systems Biology.

[2]  M. Hurlé,et al.  Myocardial and circulating levels of microRNA-21 reflect left ventricular fibrosis in aortic stenosis patients. , 2013, International journal of cardiology.

[3]  Yufei Huang,et al.  Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors , 2013, PloS one.

[4]  Duan Ma,et al.  Comprehensive expression profiling of microRNAs in laryngeal squamous cell carcinoma , 2013, Head & neck.

[5]  Hailin Chen,et al.  Similarity-based methods for potential human microRNA-disease association prediction , 2013, BMC Medical Genomics.

[6]  Emmette R. Hutchison,et al.  Interrogation of brain miRNA and mRNA expression profiles reveals a molecular regulatory network that is perturbed by mutant huntingtin , 2012, Journal of neurochemistry.

[7]  Kang Han,et al.  miR-15a and miR-16-1 downregulate CCND1 and induce apoptosis and cell cycle arrest in osteosarcoma. , 2012, Oncology reports.

[8]  M. Gazouli,et al.  Circulating MicroRNA in inflammatory bowel disease. , 2012, Journal of Crohn's & colitis.

[9]  Xing Chen,et al.  RWRMDA: predicting novel human microRNA-disease associations. , 2012, Molecular bioSystems.

[10]  Q. Cui,et al.  Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier , 2012, PloS one.

[11]  Jun Wang,et al.  [Differential expressions of miRNAs in patients with nonvalvular atrial fibrillation]. , 2012, Zhonghua yi xue za zhi.

[12]  Xia Li,et al.  Prioritizing cancer-related key miRNA–target interactions by integrative genomics , 2012, Nucleic acids research.

[13]  R. Detels,et al.  B-cell activation induced microRNA-21 is elevated in circulating B cells preceding the diagnosis of AIDS-related non-Hodgkin lymphomas , 2012, AIDS.

[14]  Zhijian Yang,et al.  Plasma levels of lipometabolism-related miR-122 and miR-370 are increased in patients with hyperlipidemia and associated with coronary artery disease , 2012, Lipids in Health and Disease.

[15]  P. Xiao,et al.  MiR-133a in Human Circulating Monocytes: A Potential Biomarker Associated with Postmenopausal Osteoporosis , 2012, PloS one.

[16]  J. Fei,et al.  miR-181a Post-Transcriptionally Downregulates Oncogenic RalA and Contributes to Growth Inhibition and Apoptosis in Chronic Myelogenous Leukemia (CML) , 2012, PloS one.

[17]  Zhaolei Zhang,et al.  Evidence for Positive Selection on a Number of MicroRNA Regulatory Interactions during Recent Human Evolution , 2012, PLoS genetics.

[18]  P. Tsao,et al.  MicroRNA-21 Blocks Abdominal Aortic Aneurysm Development and Nicotine-Augmented Expansion , 2012, Science Translational Medicine.

[19]  A. Reich,et al.  Altered microRNA expression in mycosis fungoides , 2012, The British journal of dermatology.

[20]  M. Bissonnette,et al.  miR‐143 and miR‐145 are downregulated in ulcerative colitis: Putative regulators of inflammation and protooncogenes , 2012, Inflammatory bowel diseases.

[21]  K. Nylander,et al.  Altered expression of miR-21, miR-125b, and miR-203 indicates a role for these microRNAs in oral lichen planus. , 2012, Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology.

[22]  Jeffrey A. Jones,et al.  Selective MicroRNA Suppression in Human Thoracic Aneurysms: Relationship of miR-29a to Aortic Size and Proteolytic Induction , 2011, Circulation. Cardiovascular genetics.

[23]  C. Willoughby,et al.  Mutation altering the miR-184 seed region causes familial keratoconus with cataract. , 2011, American journal of human genetics.

[24]  J. Bauersachs,et al.  Diagnostic and prognostic impact of six circulating microRNAs in acute coronary syndrome. , 2011, Journal of molecular and cellular cardiology.

[25]  W. Lukiw,et al.  Upregulation of Micro RNA-146a (miRNA-146a), A Marker for Inflammatory Neurodegeneration, in Sporadic Creutzfeldt–Jakob Disease (sCJD) and Gerstmann–Straussler–Scheinker (GSS) Syndrome , 2011, Journal of toxicology and environmental health. Part A.

[26]  Elena Marchiori,et al.  Gaussian interaction profile kernels for predicting drug-target interaction , 2011, Bioinform..

[27]  J. Corral,et al.  Identification of miRNAs as potential modulators of tissue factor expression in patients with systemic lupus erythematosus and antiphospholipid syndrome , 2011, Journal of thrombosis and haemostasis : JTH.

[28]  P. Dong,et al.  MicroRNA-194 inhibits epithelial to mesenchymal transition of endometrial cancer cells by targeting oncogene BMI-1 , 2011, Molecular Cancer.

[29]  Cheuk-Man Yu,et al.  TGF-β/Smad3 signaling promotes renal fibrosis by inhibiting miR-29. , 2011, Journal of the American Society of Nephrology : JASN.

[30]  Yun Xiao,et al.  Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target–Dysregulated Network: Case Study of Prostate Cancer , 2011, Molecular Cancer Therapeutics.

[31]  M. Manns,et al.  MicroRNA‐221 regulates FAS‐induced fulminant liver failure , 2011, Hepatology.

[32]  Pei Wang,et al.  miR-181 as a putative biomarker for lymph-node metastasis of oral squamous cell carcinoma. , 2011, Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology.

[33]  M. Ferracin,et al.  MicroRNAs Dysregulation in Human Malignant Pleural Mesothelioma , 2011, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[34]  Xianqun Fan,et al.  Microarray-based analysis: identification of hypoxia-regulated microRNAs in retinoblastoma cells. , 2011, International journal of oncology.

[35]  Z. Hui,et al.  Expression of MicroRNA-146a in peripheral blood mononuclear cells in patients with systemic lupus erythematosus. , 2011, Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae.

[36]  G. Russo,et al.  MicroRNA profiling reveals that miR-21, miR486 and miR-214 are upregulated and involved in cell survival in Sézary syndrome , 2011, Cell Death and Disease.

[37]  Josh T. Cuperus,et al.  Evolution and Functional Diversification of MIRNA Genes , 2011, Plant Cell.

[38]  H. Pollard,et al.  Elevated miR-155 Promotes Inflammation in Cystic Fibrosis by Driving Hyperexpression of Interleukin-8* , 2011, The Journal of Biological Chemistry.

[39]  Hongbing Shen,et al.  A potentially functional polymorphism in the promoter region of miR‐34b/c is associated with an increased risk for primary hepatocellular carcinoma , 2011, International journal of cancer.

[40]  D. Seldin,et al.  Dysregulation of miRNAs in AL amyloidosis , 2010, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

[41]  Changning Liu,et al.  dbDEMC: a database of differentially expressed miRNAs in human cancers , 2010, BMC Genomics.

[42]  Yadong Wang,et al.  Predicting human microRNA-disease associations based on support vector machine , 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[43]  Guohua Wang,et al.  An approach for prioritizing disease-related microRNAs based on genomic data integration , 2010, 2010 3rd International Conference on Biomedical Engineering and Informatics.

[44]  Hai-lin Tang,et al.  [Expression and its clinical significance of hsa-miR-155 in serum of endometrial cancer]. , 2010, Zhonghua fu chan ke za zhi.

[45]  Dong Wang,et al.  Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases , 2010, Bioinform..

[46]  Yadong Wang,et al.  Prioritization of disease microRNAs through a human phenome-microRNAome network , 2010, BMC Systems Biology.

[47]  I. Georgiou,et al.  The Role of microRNA‐146a (miR‐146a) and its Target IL‐1R‐Associated Kinase (IRAK1) in Psoriatic Arthritis Susceptibility , 2010, Scandinavian journal of immunology.

[48]  Chunxiang Zhang,et al.  MicroRNA-21 in Cardiovascular Disease , 2010, Journal of cardiovascular translational research.

[49]  Ujjwal Maulik,et al.  Development of the human cancer microRNA network , 2010 .

[50]  Bao-feng Zhang,et al.  Initial study of microRNA expression profiles of colonic cancer without lymph node metastasis , 2010, Journal of digestive diseases.

[51]  Stefano Volinia,et al.  MicroRNA expression profiling of human metastatic cancers identifies cancer gene targets , 2009, The Journal of pathology.

[52]  M. Wood,et al.  Short non-coding RNA biology and neurodegenerative disorders: novel disease targets and therapeutics. , 2009, Human molecular genetics.

[53]  Yunlong Liu,et al.  Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance , 2009, Bioinform..

[54]  R. Duisters,et al.  MIRNA-133 AND MIRNA-30 REGULATE CONNECTIVE TISSUE GROWTH FACTOR: IMPLICATIONS FOR A ROLE OF MIRNAS IN MYOCARDIAL MATRIX REMODELING , 2013 .

[55]  D. Bartel MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.

[56]  C. Burge,et al.  Most mammalian mRNAs are conserved targets of microRNAs. , 2008, Genome research.

[57]  Yadong Wang,et al.  miR2Disease: a manually curated database for microRNA deregulation in human disease , 2008, Nucleic Acids Res..

[58]  F. Slack,et al.  MicroRNA in cancer prognosis. , 2008, The New England journal of medicine.

[59]  Tyler E. Miller,et al.  MicroRNA-221/222 Confers Tamoxifen Resistance in Breast Cancer by Targeting p27Kip1*♦ , 2008, Journal of Biological Chemistry.

[60]  Q. Cui,et al.  An Analysis of Human MicroRNA and Disease Associations , 2008, PloS one.

[61]  Praveen Sethupathy,et al.  MicroRNA target site polymorphisms and human disease. , 2008, Trends in genetics : TIG.

[62]  Vassilis Georgoulias,et al.  Prognostic value of mature microRNA-21 and microRNA-205 overexpression in non-small cell lung cancer by quantitative real-time RT-PCR. , 2008, Clinical chemistry.

[63]  Yuanqing Ye,et al.  Evaluation of genetic variants in microRNA-related genes and risk of bladder cancer. , 2008, Cancer research.

[64]  Lin Zhang,et al.  The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis , 2008, Nature Cell Biology.

[65]  J. Steitz,et al.  Switching from Repression to Activation: MicroRNAs Can Up-Regulate Translation , 2007, Science.

[66]  M. Latronico,et al.  Emerging role of microRNAs in cardiovascular biology. , 2007, Circulation research.

[67]  M. Feitelson,et al.  Hepatitis B virus integration, fragile sites, and hepatocarcinogenesis. , 2007, Cancer letters.

[68]  Edwin Wang,et al.  Aberrant allele frequencies of the SNPs located in microRNA target sites are potentially associated with human cancers , 2007, Nucleic acids research.

[69]  O. Sheils,et al.  Effect of BRAFV600E mutation on transcription and post-transcriptional regulation in a papillary thyroid carcinoma model , 2007, Molecular cancer.

[70]  Wen-Hsiung Li,et al.  Human polymorphism at microRNAs and microRNA target sites , 2007, Proceedings of the National Academy of Sciences.

[71]  N. Rajewsky,et al.  Natural selection on human microRNA binding sites inferred from SNP data , 2006, Nature Genetics.

[72]  C. Croce,et al.  MicroRNA signatures in human cancers , 2006, Nature Reviews Cancer.

[73]  Q. Cui,et al.  Principles of microRNA regulation of a human cellular signaling network , 2006, Molecular systems biology.

[74]  F. Slack,et al.  Oncomirs — microRNAs with a role in cancer , 2006, Nature Reviews Cancer.

[75]  C. Croce,et al.  A microRNA expression signature of human solid tumors defines cancer gene targets , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[76]  Stijn van Dongen,et al.  miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..

[77]  N. Rajewsky,et al.  Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes. , 2006, Cold Spring Harbor symposia on quantitative biology.

[78]  Xantha Karp,et al.  Encountering MicroRNAs in Cell Fate Signaling , 2005, Science.

[79]  Muller Fabbri,et al.  A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. , 2005, The New England journal of medicine.

[80]  G. Arts,et al.  Biology calls the targets: combining RNAi and disease biology. , 2005, Drug discovery today.

[81]  E. Miska,et al.  How microRNAs control cell division, differentiation and death. , 2005, Current opinion in genetics & development.

[82]  P. Sarnow,et al.  Modulation of Hepatitis C Virus RNA Abundance by a Liver-Specific MicroRNA , 2005, Science.

[83]  H. Horvitz,et al.  MicroRNA expression profiles classify human cancers , 2005, Nature.

[84]  K. Lindblad-Toh,et al.  Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals , 2005, Nature.

[85]  M. Byrom,et al.  Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis , 2005, Nucleic acids research.

[86]  Peizhang Xu,et al.  MicroRNAs and the regulation of cell death. , 2004, Trends in genetics : TIG.

[87]  N. Rajewsky,et al.  A pancreatic islet-specific microRNA regulates insulin secretion , 2004, Nature.

[88]  V. Ambros The functions of animal microRNAs , 2004, Nature.

[89]  T. Tuschl,et al.  Mechanisms of gene silencing by double-stranded RNA , 2004, Nature.

[90]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature Reviews Genetics.

[91]  C. Croce,et al.  Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[92]  D. Bartel MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[93]  A. Pasquinelli,et al.  Control of developmental timing by micrornas and their targets. , 2002, Annual review of cell and developmental biology.

[94]  V. Ambros microRNAs Tiny Regulators with Great Potential , 2001, Cell.

[95]  B. Reinhart,et al.  The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans , 2000, Nature.

[96]  V. Ambros,et al.  The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 , 1993, Cell.