Advanced computational algorithms for microbial community analysis using massive 16S rRNA sequence data
暂无分享,去创建一个
Jian Li | Yunpeng Cai | Fahong Yu | Steve Goodison | Yunpeng Cai | Jian Li | Yijun Sun | F. Yu | W. Farmerie | V. Mai | S. Goodison | Volker Mai | Yijun Sun | William Farmerie | Jian Li
[1] Yudong D. He,et al. Gene expression profiling predicts clinical outcome of breast cancer , 2002, Nature.
[2] Li Liu,et al. Improved breast cancer prognosis through the combination of clinical and genetic markers , 2007, Bioinform..
[3] W. Whitman,et al. Prokaryotes: the unseen majority. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[4] Yijun Sun,et al. Iterative RELIEF for Feature Weighting: Algorithms, Theories, and Applications , 2007, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[5] Susan M. Huse,et al. Microbial Population Structures in the Deep Marine Biosphere , 2007, Science.
[6] E. Purdom,et al. Diversity of the Human Intestinal Microbial Flora , 2005, Science.
[7] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[8] P. Hugenholtz,et al. Getting to the core of the gut microbiome , 2009, Nature Biotechnology.
[9] M. Crowell,et al. Human gut microbiota in obesity and after gastric bypass , 2009, Proceedings of the National Academy of Sciences.
[10] Susan M. Huse,et al. Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.
[11] R. Knight,et al. Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. , 2009, Genome research.
[12] Susan M. Huse,et al. Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing , 2008, PLoS genetics.
[13] David G. Stork,et al. Pattern Classification , 1973 .
[14] Rick L. Stevens,et al. The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.
[15] Sinisa Todorovic,et al. Local-Learning-Based Feature Selection for High-Dimensional Data Analysis , 2010, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[16] James R. Cole,et al. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data , 2006, Nucleic Acids Res..
[17] J. Doré,et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.
[18] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[19] H. Flint,et al. Human colonic microbiota associated with diet, obesity and weight loss , 2008, International Journal of Obesity.
[20] Anders F. Andersson,et al. Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing , 2008, PloS one.
[21] Jonathan A Eisen,et al. Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes , 2007, PLoS biology.
[22] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[23] J. Tenenbaum,et al. A global geometric framework for nonlinear dimensionality reduction. , 2000, Science.
[24] J. Clarridge,et al. Impact of 16 S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases , 2004 .
[25] Les Dethlefsen,et al. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing , 2008, PLoS biology.
[26] T. Dandekar,et al. Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data. , 2004, International journal of systematic and evolutionary microbiology.
[27] T. Wolever,et al. Propionate inhibits incorporation of colonic [1,2-13C]acetate into plasma lipids in humans. , 1995, The American journal of clinical nutrition.
[28] William G. Mckendree,et al. ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences , 2009, Nucleic acids research.
[29] Jian Li,et al. Fast Implementation of ℓ1Regularized Learning Algorithms Using Gradient Descent Methods , 2010, SDM.
[30] P. Turnbaugh,et al. Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.
[31] Lu Wang,et al. The NIH Human Microbiome Project. , 2009, Genome research.
[32] J. Fuhrman. General Distributions and the 'rare Biosphere' Microbial Community Structure and Its Functional Implications Review Insight , 2022 .
[33] Christus,et al. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins , 2022 .
[34] Fabrice Armougom,et al. Exploring Microbial Diversity Using 16S rRNA High-Throughput Methods , 2009 .
[35] J. Handelsman,et al. Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness , 2005, Applied and Environmental Microbiology.
[36] F. Bäckhed,et al. Obesity alters gut microbial ecology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[37] A. Martí,et al. Shifts in clostridia, bacteroides and immunoglobulin-coating fecal bacteria associated with weight loss in obese adolescents , 2009, International Journal of Obesity.
[38] J. Clarridge,et al. Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases , 2004, Clinical Microbiology Reviews.