Anewly discovered human -globin gene

to the ease with which purified populations of hematopoietic cells are isolated. We hypothesized that human reticulocytes contain sufficient mRNA from the terminal stages of differentiation for the study of globin gene expression patterns in high throughput. Levels of globin mRNAdetection and differences in globin gene transcription between cord and adult blood were studied to determine the potential of this approach for clinical assessments of hemoglobinopathies and hemoglobin switching. Using oligonucleotide arrays, significantly different globin transcription patterns were found in cord and adult blood samples. Evidence for transcription of the major globin genes was clearly demonstrated. Surprisingly, we also identified transcription from the genomic region previously thought to encode the pseudo-2 gene. The source of that transcription is characterized in this report as a previously unrecognized globin gene.

[1]  M. Cam,et al.  A newly discovered human alpha-globin gene. , 2005, Blood.

[2]  O. Griffith,et al.  Systematic recovery and analysis of full-ORF human cDNA clones. , 2004, Genome research.

[3]  T. Gorr,et al.  Hypoxia-induced Synthesis of Hemoglobin in the Crustacean Daphnia magna Is Hypoxia-inducible Factor-dependent* , 2004, Journal of Biological Chemistry.

[4]  C. Southan Has the yo‐yo stopped? An assessment of human protein‐coding gene number , 2004, Proteomics.

[5]  Terrence S. Furey,et al.  The DNA sequence and biology of human chromosome 19 , 2004, Nature.

[6]  R. Myers,et al.  An abundance of bidirectional promoters in the human genome. , 2003, Genome research.

[7]  B. Martin,et al.  Methods for on-chip protein analysis. , 2003, Analytical biochemistry.

[8]  Rodrigo Lopez,et al.  Multiple sequence alignment with the Clustal series of programs , 2003, Nucleic Acids Res..

[9]  Mark Gerstein,et al.  Defining Genes in the Genomics Era , 2003, Science.

[10]  S. Liebhaber,et al.  Regulation of α-Globin mRNA Stability , 2003 .

[11]  T. Gorr,et al.  The Primary Structure of Three Hemoglobin Chains from the Indigo Snake (Drymarchon corais erebennus, Serpentes): First Evidence for αD Chains and Two β Chain Types in Snakes , 2002, Biological chemistry.

[12]  Jeffery L. Miller,et al.  Fetal and adult hemoglobin production during adult erythropoiesis: coordinate expression correlates with cell proliferation. , 2002, Blood.

[13]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[14]  T. Somervaille Disorders of Hemoglobin: Genetics, Pathophysiology, and Clinical Management , 2001 .

[15]  E. Fung,et al.  Protein biochips for differential profiling. , 2001, Current opinion in biotechnology.

[16]  Hwan-Gue Cho,et al.  PhyloDraw: a phylogenetic tree drawing system , 2000, Bioinform..

[17]  S. Weinberger,et al.  Recent advancements in surface‐enhanced laser desorption/ionization‐time of flight‐mass spectrometry , 2000, Electrophoresis.

[18]  T. Werner,et al.  Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. , 2000, Journal of molecular biology.

[19]  J. S. Rogers,et al.  Multiple local maxima for likelihoods of phylogenetic trees: a simulation study. , 1999, Molecular biology and evolution.

[20]  O Gascuel,et al.  BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. , 1997, Molecular biology and evolution.

[21]  C. Kundrot,et al.  Structures of a hemoglobin-based blood substitute: insights into the function of allosteric proteins. , 1997, Structure.

[22]  E. Moriyama,et al.  The amino acid sequences of two alpha chains of hemoglobins from Komodo dragon Varanus komodoensis and phylogenetic relationships of amniotes. , 1996, Molecular biology and evolution.

[23]  A. Desideri,et al.  Diving behaviour and haemoglobin function: the primary structure of the alpha- and beta-chains of the sea turtle (Caretta caretta) and its functional implications. , 1996, The Biochemical journal.

[24]  M. Boguski,et al.  dbEST — database for “expressed sequence tags” , 1993, Nature Genetics.

[25]  A. Carè,et al.  Developmental switching of messenger RNA expression from the human alpha-globin cluster: fetal/adult pattern of theta-globin gene expression. , 1992, Blood.

[26]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[27]  A. Wilkie,et al.  A review of the molecular genetics of the human alpha-globin gene cluster. , 1989, Blood.

[28]  H. Bunn,et al.  Cotranslational amino-terminal processing of cytosolic proteins. Cell-free expression of site-directed mutants of human hemoglobin. , 1988, The Journal of biological chemistry.

[29]  Y. Fei,et al.  Two different theta (θ) globin gene deletions observed among black newborn babies , 1988 .

[30]  J. Marks,et al.  Structure and expression of the human \[thetas]l globin gene , 1988, Nature.

[31]  M. Kozak An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs. , 1987, Nucleic acids research.

[32]  J. Clegg Can the product of the \[thetas] gene be a real globin? , 1987, Nature.

[33]  G. Braunitzer,et al.  High-altitude respiration of birds. The primary structures of the alpha D-chains of the Bar-headed Goose (Anser indicus), the Greylag Goose(Anser anser) and the Canada Goose (Branta canadensis). , 1986, Biological chemistry Hoppe-Seyler.

[34]  J. Shaw,et al.  Sequence organization and genomic complexity of primate \[thetas]1 globin gene, a novel α-globin-like gene , 1986, Nature.

[35]  C. Schmid,et al.  A previously undetected pseudogene in the human alpha globin gene cluster. , 1986, Nucleic acids research.

[36]  T. Maniatis,et al.  The structure of the human zeta-globin gene and a closely linked, nearly identical pseudogene , 1982, Cell.

[37]  L. Hood,et al.  Minor early embryonic chick hemoglobin M. Amino acid sequences of the epsilon and alpha D chains. , 1982, The Journal of biological chemistry.

[38]  H. Bunn Evolution of mammalian hemoglobin function. , 1981, Blood.

[39]  T. Maniatis,et al.  Structure and in vitro transcription of human globin genes. , 1980, Science.

[40]  Tom Maniatis,et al.  The structure of a human α-globin pseudogene and its relationship to α-globin gene duplication , 1980, Cell.

[41]  V. Ingram,et al.  Structural studies on chick embryonic hemoglobins. , 1974, The Journal of biological chemistry.

[42]  Asha Shah,et al.  Thalassemia syndromes. , 2004, Indian Journal of Medical Sciences.

[43]  Mark Gerstein,et al.  Genomics. Defining genes in the genomics era. , 2003, Science.

[44]  S. Liebhaber,et al.  Regulation of alpha-globin mRNA stability. , 2003, Experimental biology and medicine.

[45]  Tobin,et al.  Minor Early Embryonic Chick Hemoglobin , 2001 .

[46]  International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome , 2001, Nature.

[47]  M Paoli,et al.  The stereochemical mechanism of the cooperative effects in hemoglobin revisited. , 1998, Annual review of biophysics and biomolecular structure.

[48]  G. Braunitzer,et al.  Hemoglobins of reptiles. The primary structure of the major and minor hemoglobin component of adult Western Painted Turtle (Chrysemys picta bellii). , 1988, Biological chemistry Hoppe-Seyler.

[49]  G. Braunitzer,et al.  High altitude respiration of birds. The primary structures of the major and minor hemoglobin component of adult European black vulture (Aegypius monachus, Aegypiinae). , 1987, Biological chemistry Hoppe-Seyler.

[50]  J. Shaw,et al.  Sequence organization and genomic complexity of primate theta 1 globin gene, a novel alpha-globin-like gene. , 1986, Nature.

[51]  T. Maniatis,et al.  The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication. , 1980, Cell.