Bacterial diversity in the sediments of a temperate artificial lake, Rapel reservoir

Rapel reservoir is an eutrophic system in Chile that has undergone a series of anthropogenic impacts in recent decades. To provide a better understanding of the processes occurring in the reservoir, we examined bacterial composition from surface sediments using traditional microbiology techniques and molecular biology tools. Our results showed significant temporal variation in the physical and chemical composition of the water column, but no depth-related differences during the study period. To detect temporal changes in bacterial composition, cultivable heterotrophic bacteria, heterotrophic iron oxidizing bacteria, and sulfate-reducing bacteria were extracted from the surface sediments and their concentration measured. Microbial diversity in sediments was represented by closest relatives of eight different bacterial phyla. The most frequently recovered phylotypes in the clone library of 16S rDNA were related to sulfate-reducing bacteria belong to the Deltaproteobacteria group.

[1]  M. Fournier,et al.  Oxygen defense in sulfate-reducing bacteria. , 2006, Journal of biotechnology.

[2]  R. Hell,et al.  Sulfur and primary production in aquatic environments: an ecological perspective , 2005, Photosynthesis Research.

[3]  W. Vyverman,et al.  Characterization of bacterial communities in four freshwater lakes differing in nutrient load and food web structure. , 2005, FEMS microbiology ecology.

[4]  R. Sanford,et al.  Bacterial sulfate reduction limits natural arsenic contamination in groundwater , 2004 .

[5]  Sudhir Kumar,et al.  MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment , 2004, Briefings Bioinform..

[6]  Sebastian Maassen,et al.  Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. , 2003, FEMS microbiology ecology.

[7]  J. Pizarro,et al.  STUDY OF CHEMICAL SPECIATION IN SEDIMENTS: AN APPROACH TO VERTICAL METALS DISTRIBUTION IN RAPEL RESERVOIR (CHILE) , 2003 .

[8]  D. Soto Oligotrophic patterns in southern Chilean lakes: the relevance of nutrients and mixing depth , 2002 .

[9]  M. Friedrich,et al.  Desulfotignum phosphitoxidans sp. nov., a new marine sulfate reducer that oxidizes phosphite to phosphate , 2002, Archives of Microbiology.

[10]  Chun-Lin Huang,et al.  Denaturing gradient gel electrophoresis polymorphism for rapid 16S rDNA clone screening and microbial diversity study , 2002 .

[11]  K. Schleifer,et al.  Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies. , 2000, FEMS microbiology reviews.

[12]  D. D. Adams,et al.  Gases in the sediments of two eutrophic Chilean reservoirs: potential sediment oxygen demand and sediment—water flux of CH4 and CO2 before and after an El Niño event , 2000 .

[13]  H. Cypionka,et al.  Oxygen respiration by desulfovibrio species. , 2000, Annual review of microbiology.

[14]  M. Contreras,et al.  Eutrophication and phytoplankton selective responses in a temperate reservoir , 1997 .

[15]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[16]  K. Schleifer,et al.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.

[17]  J. Drever,et al.  Precipitation of arsenic during bacterial sulfate reduction , 1995 .

[18]  A. Uitterlinden,et al.  Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA , 1993, Applied and environmental microbiology.

[19]  Derek R. Lovley,et al.  Reduction of Fe(III) in sediments by sulphate-reducing bacteria , 1993, Nature.

[20]  Sven-Olof Ryding,et al.  The control of eutrophication of lakes and reservoirs , 1989 .

[21]  C. S. Reynolds,et al.  Short-term dynamics of a Melosira population in the plankton of an impoundment in central Chile , 1986 .

[22]  V. Montecino,et al.  Phytoplankton activity and standing crop in an impoundment of central Chile , 1982 .

[23]  H. Noller,et al.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. , 1981, Journal of molecular biology.

[24]  Daniel Simberloff,et al.  Properties of the Rarefaction Diversity Measurement , 1972, The American Naturalist.