Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.)

[1]  E. Mandeville,et al.  Analysis of Population Genomic Data from Hybrid Zones , 2017 .

[2]  J. Arntzen,et al.  Hybrid zone formation and contrasting outcomes of secondary contact over transects in common toads , 2017, Molecular ecology.

[3]  L. Bernatchez,et al.  Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis) , 2016, bioRxiv.

[4]  R. Butlin,et al.  A genomic footprint of hybrid zone movement in crested newts , 2017, Evolution letters.

[5]  N. Jeffery,et al.  RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (Carcinus maenas) in the Northwest Atlantic , 2017, Ecology and evolution.

[6]  F. Bonhomme,et al.  Introgressive hybridization and morphological transgression in the contact zone between two Mediterranean Solea species , 2017, Ecology and evolution.

[7]  G. Evanno,et al.  Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes , 2017, Molecular ecology.

[8]  Martijn A. M. de Leeuw,et al.  Stabilization of a salamander moving hybrid zone , 2016, Ecology and evolution.

[9]  N. Galtier,et al.  Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence , 2016, bioRxiv.

[10]  C. Grossen,et al.  Strong reproductive isolation and narrow genomic tracts of differentiation among three woodpecker species in secondary contact , 2016, Molecular ecology.

[11]  F. Bonhomme,et al.  Parallel genetic divergence among coastal–marine ecotype pairs of European anchovy explained by differential introgression after secondary contact , 2016, Molecular ecology.

[12]  R. Harrison,et al.  Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones , 2016, Molecular ecology.

[13]  L. Rieseberg,et al.  A genomic perspective on hybridization and speciation , 2016, Molecular ecology.

[14]  Scott A. Taylor,et al.  Hybrid zones: windows on climate change. , 2015, Trends in ecology & evolution.

[15]  R. Reinhardt,et al.  European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation , 2014, Nature Communications.

[16]  Scott A. Taylor,et al.  Spatiotemporally consistent genomic signatures of reproductive isolation in a moving hybrid zone , 2014, Evolution; international journal of organic evolution.

[17]  James M. Maley,et al.  hzar: hybrid zone analysis using an R software package , 2014, Molecular ecology resources.

[18]  M. Stephens,et al.  fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets , 2014, Genetics.

[19]  D. Bekkevold,et al.  Assessing patterns of hybridization between North Atlantic eels using diagnostic single-nucleotide polymorphisms , 2014, Heredity.

[20]  S. Bogdanowicz,et al.  DIFFERENTIAL INTROGRESSION IN A MOSAIC HYBRID ZONE REVEALS CANDIDATE BARRIER GENES , 2013, Evolution; international journal of organic evolution.

[21]  Z. Gompert,et al.  GENOME DIVERGENCE AND THE GENETIC ARCHITECTURE OF BARRIERS TO GENE FLOW BETWEEN LYCAEIDES IDAS AND L. MELISSA , 2013, Evolution; international journal of organic evolution.

[22]  Nicolas Bierne,et al.  Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species. , 2013, Molecular biology and evolution.

[23]  Angel Amores,et al.  Stacks: an analysis tool set for population genomics , 2013, Molecular ecology.

[24]  B. Fitzpatrick,et al.  Alternative forms for genomic clines , 2013, Ecology and evolution.

[25]  V. Sousa,et al.  Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models , 2013, Genetics.

[26]  M. Nachman,et al.  Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit , 2013, Molecular ecology.

[27]  Z. Gompert,et al.  bgc: Software for Bayesian estimation of genomic clines , 2012, Molecular ecology resources.

[28]  J. Fordyce,et al.  GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES , 2012, Evolution; international journal of organic evolution.

[29]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[30]  Z. Gompert,et al.  Genomics of isolation in hybrids , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

[31]  Thibaut Jombart,et al.  adegenet 1.3-1: new tools for the analysis of genome-wide SNP data , 2011, Bioinform..

[32]  J. Pool,et al.  Measures of linkage disequilibrium among neighbouring SNPs indicate asymmetries across the house mouse hybrid zone , 2011, Molecular ecology.

[33]  Gonçalo R. Abecasis,et al.  The variant call format and VCFtools , 2011, Bioinform..

[34]  Z. Gompert,et al.  Bayesian estimation of genomic clines , 2011, Molecular ecology.

[35]  P. David,et al.  The coupling hypothesis: why genome scans may fail to map local adaptation genes , 2011, Molecular ecology.

[36]  F. Bonhomme,et al.  Expanding hybrid zone between Solea aegyptiaca and Solea senegalensis: genetic evidence over two decades , 2011, Molecular Ecology.

[37]  N. Bierne.  THE DISTINCTIVE FOOTPRINTS OF LOCAL HITCHHIKING IN A VARIED ENVIRONMENT AND GLOBAL HITCHHIKING IN A SUBDIVIDED POPULATION , 2010, Evolution; international journal of organic evolution.

[38]  L. Moyle,et al.  Hybrid Incompatibility “Snowballs” Between Solanum Species , 2010, Science.

[39]  B. Payseur.  Using differential introgression in hybrid zones to identify genomic regions involved in speciation , 2010, Molecular ecology resources.

[40]  Gregory Ewing,et al.  MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus , 2010, Bioinform..

[41]  Z. Gompert,et al.  introgress: a software package for mapping components of isolation in hybrids , 2010, Molecular ecology resources.

[42]  S. Voss,et al.  Rapid spread of invasive genes into a threatened native species , 2010, Proceedings of the National Academy of Sciences.

[43]  Ryan D. Hernandez,et al.  Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data , 2009, PLoS genetics.

[44]  Z. Gompert,et al.  A powerful regression‐based method for admixture mapping of isolation across the genome of hybrids , 2009, Molecular ecology.

[45]  P. Etter,et al.  Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers , 2008, PloS one.

[46]  Thibaut Jombart,et al.  adegenet: a R package for the multivariate analysis of genetic markers , 2008, Bioinform..

[47]  Maria A Sans-Fuentes,et al.  Genome-wide patterns of gene flow across a house mouse hybrid zone. , 2007, Genome research.

[48]  T. Patarnello,et al.  Pillars of Hercules: is the Atlantic–Mediterranean transition a phylogeographical break? , 2007, Molecular ecology.

[49]  R. Buggs,et al.  Empirical study of hybrid zone movement , 2007, Heredity.

[50]  P. David,et al.  Introgression patterns in the mosaic hybrid zone between Mytilus edulis and M. galloprovincialis , 2003, Molecular ecology.

[51]  E. Thompson,et al.  A model-based method for identifying species hybrids using multilocus genetic data. , 2002, Genetics.

[52]  P. Keim,et al.  HYBRID POPULATIONS SELECTIVELY FILTER GENE INTROGRESSION BETWEEN SPECIES , 2001, Evolution; international journal of organic evolution.

[53]  L. Kruuk,et al.  A comparison of multilocus clines maintained by environmental adaptation or by selection against hybrids. , 1999, Genetics.

[54]  A. Shapiro,et al.  THE PONTIA DAPLIDICE‐ED USA HYBRID ZONE IN NORTHWESTERN ITALY , 1997, Evolution; international journal of organic evolution.

[55]  H. A. Orr,et al.  The population genetics of speciation: the evolution of hybrid incompatibilities. , 1995, Genetics.

[56]  D. Futuyma,et al.  Hybrid zones and the evolutionary process , 1995 .

[57]  G. Hewitt.  Hybrid zones-natural laboratories for evolutionary studies. , 1988, Trends in ecology & evolution.

[58]  F. Bonhomme,et al.  Multivariate analysis of genetic exchanges between Solea aegyptiaca and Solea senegalensis (Teleosts, Soleidae) , 1987 .

[59]  N. Barton,et al.  The barrier to genetic exchange between hybridising populations , 1986, Heredity.

[60]  N. Barton,et al.  GENETIC ANALYSIS OF A HYBRID ZONE BETWEEN THE FIRE‐BELLIED TOADS, BOMBINA BOMBINA AND B. VARIEGATA, NEAR CRACOW IN SOUTHERN POLAND , 1986, Evolution; international journal of organic evolution.

[61]  N. Barton.  MULTILOCUS CLINES , 1983, Evolution; international journal of organic evolution.

[62]  N. Barton.  Gene flow past a cline , 1979, Heredity.

[63]  J. Endler.  Geographic variation, speciation, and clines. , 1977, Monographs in population biology.

[64]  J. Turner.  WHY DOES THE GENOTYPE NOT CONGEAL? , 1967, Evolution; international journal of organic evolution.

[65]  T. Dobzhansky.  Genetic Nature of Species Differences , 1937, The American Naturalist.

[66]  M. Claros,et al.  Current status in other finfish species: Description of current genomic resources for the gilthead seabream (Sparus aurata) and soles (Solea senegalensis and Solea solea) , 2016 .

[67]  Alexander Schwartz,et al.  Systematics And The Origin Of Species , 2016 .

[68]  Nicholas H. Barton,et al.  Genetic analysis of hybrid zones , 1993 .

[69]  R. Harrison,et al.  Hybrid zones: windows on evolutionary process. , 1990 .

[70]  N. Barton,et al.  Analysis of Hybrid Zones , 1985 .