Contributions and Limitations of Biophysical Approaches to Study of the Interactions between Amphiphilic Molecules and the Plant Plasma Membrane
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Catherine Sarazin | Sébastien Buchoux | Laurence Lins | Magali Deleu | Aurélien L Furlan | Yoann Laurin | Camille Botcazon | Nely Rodríguez-Moraga | Sonia Rippa | L. Lins | M. Deleu | Sébastien Buchoux | C. Sarazin | Sonia Rippa | Yoann Laurin | Aurélien L. Furlan | Camille Botcazon | Nely Rodríguez-Moraga
[1] J. Davis,et al. Deuterium magnetic resonance study of the gel and liquid crystalline phases of dipalmitoyl phosphatidylcholine. , 1979, Biophysical journal.
[2] J. Killian,et al. Conformational analysis of gramicidin-gramicidin interactions at the air/water interface suggests that gramicidin aggregates into tube-like structures similar as found in the gramicidin-induced hexagonal HII phase. , 1987, Biochimica et biophysica acta.
[3] B. Bechinger,et al. 15N and 31P solid-state NMR investigations on the orientation of zervamicin II and alamethicin in phosphatidylcholine membranes. , 2001, Biochemistry.
[4] R. Brasseur,et al. Interaction of Surfactin with Membranes: A Computational Approach , 2003 .
[5] J. Crowet,et al. Interactions of sugar-based bolaamphiphiles with biomimetic systems of plasma membranes. , 2016, Biochimie.
[6] B. Thomma,et al. Understanding plant immunity as a surveillance system to detect invasion. , 2015, Annual review of phytopathology.
[7] G. Feigenson,et al. Asymmetric Bilayers by Hemifusion: Method and Leaflet Behaviors. , 2019, Biophysical journal.
[8] A. Reddy,et al. Ligand-dependent reduction in the membrane mobility of FLAGELLIN SENSITIVE2, an arabidopsis receptor-like kinase. , 2007, Plant & cell physiology.
[9] R. Standaert,et al. Preparation of asymmetric phospholipid vesicles for use as cell membrane models , 2018, Nature Protocols.
[10] Chris Oostenbrink,et al. A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force‐field parameter sets 53A5 and 53A6 , 2004, J. Comput. Chem..
[11] A. Kyrychenko. Using fluorescence for studies of biological membranes: a review , 2015, Methods and applications in fluorescence.
[12] A. Thomas,et al. "De novo" design of peptides with specific lipid-binding properties. , 2006, Biophysical journal.
[13] S. Marčelja,et al. Physical principles of membrane organization , 1980, Quarterly Reviews of Biophysics.
[14] C. Zipfel,et al. Regulation of pattern recognition receptor signalling in plants , 2016, Nature Reviews Immunology.
[15] R. Brasseur,et al. The hydrophobic effect in protein folding , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[16] S. Takeuchi,et al. Giant liposome formation toward the synthesis of well-defined artificial cells. , 2017, Journal of materials chemistry. B.
[17] C. Toniolo,et al. Alamethicin Interaction with Lipid Membranes: A Spectroscopic Study on Synthetic Analogues , 2007, Chemistry & biodiversity.
[18] Zhaoxin Lu,et al. Antifungal activity and mechanism of fengycin in the presence and absence of commercial surfactin against Rhizopus stolonifer , 2011, The Journal of Microbiology.
[19] H. Heerklotz,et al. Additive and synergistic membrane permeabilization by antimicrobial (lipo)peptides and detergents. , 2014, Biophysical journal.
[20] C. Toniolo,et al. The fluorescence and infrared absorption probe para‐cyanophenylalanine: Effect of labeling on the behavior of different membrane‐interacting peptides , 2015, Biopolymers.
[21] Helgi I Ingólfsson,et al. Lipid organization of the plasma membrane. , 2014, Journal of the American Chemical Society.
[22] Julien Gronnier,et al. Revisiting Plant Plasma Membrane Lipids in Tobacco: A Focus on Sphingolipids1 , 2015, Plant Physiology.
[23] A. Carvalho,et al. Diphenylhexatriene membrane probes DPH and TMA-DPH: A comparative molecular dynamics simulation study. , 2016, Biochimica et biophysica acta.
[24] B. L. de Groot,et al. CHARMM36m: an improved force field for folded and intrinsically disordered proteins , 2016, Nature Methods.
[25] Julien Gronnier,et al. Plant lipids: Key players of plasma membrane organization and function. , 2019, Progress in lipid research.
[26] N. Matsumori,et al. Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy. , 2018, Biochimica et biophysica acta. General subjects.
[27] Chanhui Lee,et al. Harpins, multifunctional proteins secreted by gram-negative plant-pathogenic bacteria. , 2013, Molecular plant-microbe interactions : MPMI.
[28] B. Lentz,et al. Use of fluorescent probes to monitor molecular order and motions within liposome bilayers. , 1993, Chemistry and physics of lipids.
[29] Petra Schwille,et al. Probing Lipid Mobility of Raft-exhibiting Model Membranes by Fluorescence Correlation Spectroscopy* , 2003, Journal of Biological Chemistry.
[30] C. Clément,et al. Rhamnolipid Biosurfactants as New Players in Animal and Plant Defense against Microbes , 2010, International journal of molecular sciences.
[31] M. Romantschuk,et al. Functional mapping of harpin HrpZ of Pseudomonas syringae reveals the sites responsible for protein oligomerization, lipid interactions and plant defence induction. , 2011, Molecular plant pathology.
[32] F. Baluška,et al. Di-4-ANEPPDHQ, a fluorescent probe for the visualisation of membrane microdomains in living Arabidopsis thaliana cells. , 2015, Plant physiology and biochemistry : PPB.
[33] V. Labhasetwar,et al. Biophysical interactions with model lipid membranes: applications in drug discovery and drug delivery. , 2009, Molecular pharmaceutics.
[34] George Khelashvili,et al. Mechanisms of Lipid Scrambling by the G Protein-Coupled Receptor Opsin. , 2017, Structure.
[35] L. Brown,et al. Membrane proteins in their native habitat as seen by solid‐state NMR spectroscopy , 2015, Protein science : a publication of the Protein Society.
[36] W. Wimley,et al. A high-throughput screen for identifying transmembrane pore-forming peptides. , 2001, Analytical biochemistry.
[37] C. Toniolo,et al. Hypersensitive‐Like Response to the Pore‐Former Peptaibol Alamethicin in Arabidopsis Thaliana , 2010, Chembiochem : a European journal of chemical biology.
[38] A. Ortiz,et al. Permeabilization of biological and artificial membranes by a bacterial dirhamnolipid produced by Pseudomonas aeruginosa. , 2010, Journal of colloid and interface science.
[39] Helgi I. Ingólfsson,et al. Computational Modeling of Realistic Cell Membranes , 2019, Chemical reviews.
[40] B. Charloteaux,et al. Tilted properties of the 67–78 fragment of α‐synuclein are responsible for membrane destabilization and neurotoxicity , 2007, Proteins.
[41] Elliot L Elson,et al. Fluorescence correlation spectroscopy: past, present, future. , 2011, Biophysical journal.
[42] Jianpeng Ma,et al. CHARMM: The biomolecular simulation program , 2009, J. Comput. Chem..
[43] E. Tajkhorshid,et al. Residue-specific information about the dynamics of antimicrobial peptides from (1)H-(15)N and (2)H solid-state NMR spectroscopy. , 2009, Journal of the American Chemical Society.
[44] A. Ortiz,et al. Effect of a dirhamnolipid biosurfactant on the structure and phase behaviour of dimyristoylphosphatidylserine model membranes. , 2019, Colloids and surfaces. B, Biointerfaces.
[45] S. Reissmann,et al. Structure and alignment of the membrane-associated peptaibols ampullosporin A and alamethicin by oriented 15N and 31P solid-state NMR spectroscopy. , 2009, Biophysical journal.
[46] P. Balaram,et al. Interactions of the channel forming peptide alamethicin with artificial and natural membranes , 1984, Journal of Biosciences.
[47] Che Ma,et al. Nuclear magnetic resonance of membrane-associated peptides and proteins. , 2001, Methods in enzymology.
[48] H. Heerklotz,et al. Vesicle Leakage Reflects the Target Selectivity of Antimicrobial Lipopeptides from Bacillus subtilis. , 2015, Biophysical journal.
[49] D. Voelker,et al. Preparation of Asymmetric Liposomes Using a Phosphatidylserine Decarboxylase. , 2018, Biophysical journal.
[50] R. Brasseur,et al. Computer Simulation of Surfactin Conformation at a Hydrophobic/Hydrophilic Interface , 1999 .
[51] A. Naito,et al. Structure and orientation of antibiotic peptide alamethicin in phospholipid bilayers as revealed by chemical shift oscillation analysis of solid state nuclear magnetic resonance and molecular dynamics simulation. , 2015, Biochimica et biophysica acta.
[52] A. Ortiz,et al. Antimycotic activity of fengycin C biosurfactant and its interaction with phosphatidylcholine model membranes. , 2017, Colloids and surfaces. B, Biointerfaces.
[53] I. Vattulainen,et al. Nanoscale Membrane Domain Formation Driven by Cholesterol , 2017, Scientific Reports.
[54] V. Pashynska. Mass spectrometric study of rhamnolipid biosurfactants and their interactions with cell membrane phospholipids , 2009 .
[55] Yasin F. Dagdas,et al. Nine things to know about elicitins. , 2016, The New phytologist.
[56] P. Schwille,et al. Fluorescence techniques to study lipid dynamics. , 2011, Cold Spring Harbor perspectives in biology.
[57] E. Hosy,et al. Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains , 2017, eLife.
[58] James H. Davis,et al. The description of membrane lipid conformation, order and dynamics by 2H-NMR. , 1983, Biochimica et biophysica acta.
[59] J. Dinić,et al. Laurdan and di-4-ANEPPDHQ do not respond to membrane-inserted peptides and are good probes for lipid packing. , 2011, Biochimica et biophysica acta.
[60] Megha,et al. Preparation and Properties of Asymmetric Vesicles That Mimic Cell Membranes , 2009, Journal of Biological Chemistry.
[61] R. Brasseur,et al. Molecular Determinants of the Interaction Between the C‐Terminal Domain of Alzheimer's β‐Amyloid Peptide and Apolipoprotein E α‐Helices , 1999 .
[62] Wenxu Zhou,et al. Acclimation-induced changes in cell membrane composition and influence on cryotolerance of in vitro shoots of native plant species , 2013, Plant Cell, Tissue and Organ Culture (PCTOC).
[63] F. Besson,et al. Interactions of the natural antimicrobial mycosubtilin with phospholipid membrane models. , 2010, Colloids and surfaces. B, Biointerfaces.
[64] L. Lins,et al. Interaction of hexadecylbetainate chloride with biological relevant lipids. , 2012, Langmuir : the ACS journal of surfaces and colloids.
[65] J. Svobodová,et al. Bacillus subtilis alters the proportion of major membrane phospholipids in response to surfactin exposure. , 2016, Biochimica et biophysica acta.
[66] J. Crowet,et al. Differential Interaction of Synthetic Glycolipids with Biomimetic Plasma Membrane Lipids Correlates with the Plant Biological Response. , 2017, Langmuir : the ACS journal of surfaces and colloids.
[67] F. Marassi,et al. Hydration-optimized oriented phospholipid bilayer samples for solid-state NMR structural studies of membrane proteins. , 2003, Journal of magnetic resonance.
[68] S. Mongrand,et al. Plant-Pathogen Interactions: Underestimated Roles of Phyto-oxylipins. , 2020, Trends in plant science.
[69] Siewert J. Marrink,et al. The molecular face of lipid rafts in model membranes , 2008, Proceedings of the National Academy of Sciences.
[70] C. Zipfel,et al. Function, Discovery, and Exploitation of Plant Pattern Recognition Receptors for Broad-Spectrum Disease Resistance. , 2017, Annual review of phytopathology.
[71] Vahid Sandoghdar,et al. Production of Isolated Giant Unilamellar Vesicles under High Salt Concentrations , 2017, Front. Physiol..
[72] M. Dauchez,et al. Exploring the Dual Interaction of Natural Rhamnolipids with Plant and Fungal Biomimetic Plasma Membranes through Biophysical Studies , 2019, International journal of molecular sciences.
[73] Sanguk Kim,et al. 2D solid state NMR spectral simulation of 310, α, and π-helices , 2004 .
[74] S. Singer,et al. The fluid mosaic model of the structure of cell membranes. , 1972, Science.
[75] F. Marassi. A simple approach to membrane protein secondary structure and topology based on NMR spectroscopy. , 2001, Biophysical journal.
[76] W. Webb,et al. Fluorescence probe partitioning between Lo/Ld phases in lipid membranes. , 2007, Biochimica et biophysica acta.
[77] T. Yamashita,et al. Alterations in detergent-resistant plasma membrane microdomains in Arabidopsis thaliana during cold acclimation. , 2009, Plant & cell physiology.
[78] T. Ott,et al. The Nanoscale Organization of the Plasma Membrane and Its Importance in Signaling: A Proteolipid Perspective1[OPEN] , 2019, Plant Physiology.
[79] D. Tieleman,et al. The MARTINI force field: coarse grained model for biomolecular simulations. , 2007, The journal of physical chemistry. B.
[80] T. Kikukawa,et al. Changes in lipid mobility associated with alamethicin incorporation into membranes. , 2002, Archives of biochemistry and biophysics.
[81] Holger Gohlke,et al. The Amber biomolecular simulation programs , 2005, J. Comput. Chem..
[82] P. Yeagle. Laboratory Membrane Systems , 2016 .
[83] Gerrit Groenhof,et al. GROMACS: Fast, flexible, and free , 2005, J. Comput. Chem..
[84] S. Dufour,et al. Surfactins modulate the lateral organization of fluorescent membrane polar lipids: a new tool to study drug:membrane interaction and assessment of the role of cholesterol and drug acyl chain length. , 2013, Biochimica et biophysica acta.
[85] C. Eggeling,et al. Laurdan and Di-4-ANEPPDHQ probe different properties of the membrane , 2016, bioRxiv.
[86] P. Moreau,et al. A Combinatorial Lipid Code Shapes the Electrostatic Landscape of Plant Endomembranes. , 2018, Developmental cell.
[87] Leslie M Loew,et al. Cholesterol-enriched lipid domains can be visualized by di-4-ANEPPDHQ with linear and nonlinear optics. , 2005, Biophysical journal.
[88] J. Crowet,et al. Complementary biophysical tools to investigate lipid specificity in the interaction between bioactive molecules and the plasma membrane: A review. , 2014, Biochimica et biophysica acta.
[89] E. London,et al. Preparation of Artificial Plasma Membrane Mimicking Vesicles with Lipid Asymmetry , 2014, PloS one.
[90] S. Mongrand,et al. Modification of Plasma Membrane Organization in Tobacco Cells Elicited by Cryptogein1[W] , 2013, Plant Physiology.
[91] K. Edwards,et al. All-or-none membrane permeabilization by fengycin-type lipopeptides from Bacillus subtilis QST713. , 2011, Biochimica et biophysica acta.
[92] H. Heerklotz,et al. Engineering Asymmetric Lipid Vesicles: Accurate and Convenient Control of the Outer Leaflet Lipid Composition. , 2018, Langmuir : the ACS journal of surfaces and colloids.
[93] E. Dufourc,et al. Dynamics of phosphate head groups in biomembranes. Comprehensive analysis using phosphorus-31 nuclear magnetic resonance lineshape and relaxation time measurements. , 1992, Biophysical journal.
[94] W. Webb,et al. GUV preparation and imaging: minimizing artifacts. , 2010, Biochimica et biophysica acta.
[95] L. Lins,et al. Analysis of calcium-induced effects on the conformation of fengycin. , 2013, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.
[96] J. Crowet,et al. Linoleic and linolenic acid hydroperoxides interact differentially with biomimetic plant membranes in a lipid specific manner. , 2019, Colloids and surfaces. B, Biointerfaces.
[97] Jinxing Lin,et al. Quantification of Membrane Protein Dynamics and Interactions in Plant Cells by Fluorescence Correlation Spectroscopy. , 2016, Molecular plant.
[98] R. Pons,et al. Complex rhamnolipid mixture characterization and its influence on DPPC bilayer organization. , 2014, Biochimica et biophysica acta.
[99] J. Cartaud,et al. Formation of unilamellar vesicles by repetitive freeze-thaw cycles: characterization by electron microscopy and 31P-nuclear magnetic resonance , 2000, European Biophysics Journal.
[100] D. MacLean,et al. Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains , 2017, eLife.
[101] T. Boubekeur,et al. Remorin, a Solanaceae Protein Resident in Membrane Rafts and Plasmodesmata, Impairs Potato virus X Movement[W] , 2009, The Plant Cell Online.
[102] M. Uemura,et al. Cold Acclimation of Arabidopsis thaliana (Effect on Plasma Membrane Lipid Composition and Freeze-Induced Lesions) , 1995, Plant physiology.
[103] R. Brasseur,et al. Effects of surfactin on membrane models displaying lipid phase separation. , 2013, Biochimica et biophysica acta.
[104] A. Ortiz,et al. Effects of dirhamnolipid on the structural properties of phosphatidylcholine membranes. , 2006, International journal of pharmaceutics.
[105] E. Dufourc,et al. Surfactin-triggered small vesicle formation of negatively charged membranes: a novel membrane-lysis mechanism. , 2008, Biophysical journal.
[106] L. Hellgren,et al. Lipid asymmetry in plant plasma membranes: phosphate deficiency‐induced phospholipid replacement is restricted to the cytosolic leaflet , 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[107] London,et al. Location of diphenylhexatriene (DPH) and its derivatives within membranes: comparison of different fluorescence quenching analyses of membrane depth , 1998, Biochemistry.
[108] L. Bagatolli,et al. To see or not to see: lateral organization of biological membranes and fluorescence microscopy. , 2006, Biochimica et biophysica acta.
[109] Laxmikant V. Kalé,et al. Scalable molecular dynamics with NAMD , 2005, J. Comput. Chem..
[110] S. Mongrand,et al. Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins , 2017, Science.
[111] Julien Gronnier,et al. Divide and Rule: Plant Plasma Membrane Organization. , 2018, Trends in plant science.
[112] C. Clément,et al. Apoplastic invasion patterns triggering plant immunity: plasma membrane sensing at the frontline , 2019, Molecular plant pathology.
[113] C. Zipfel. Early molecular events in PAMP-triggered immunity. , 2009, Current opinion in plant biology.
[114] Nohad Gresh,et al. Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc04531j , 2017, Chemical science.
[115] N. Leborgne-Castel,et al. Plasma membrane order and fluidity are diversely triggered by elicitors of plant defence , 2016, Journal of experimental botany.
[116] F. Ausubel. Are innate immune signaling pathways in plants and animals conserved? , 2005, Nature Immunology.
[117] Huey W. Huang,et al. Action of Antimicrobial Peptides on Bacterial and Lipid Membranes: A Direct Comparison. , 2017, Biophysical journal.
[118] K. A. Noghabi,et al. Interaction of a bacterial monorhamnolipid secreted by Pseudomonas aeruginosa MA01 with phosphatidylcholine model membranes. , 2012, Chemistry and physics of lipids.
[119] E. Gratton,et al. Direct Observation of Lipid Domains in Free-Standing Bilayers Using Two-Photon Excitation Fluorescence Microscopy , 2001, Journal of Fluorescence.
[120] Enrico Gratton,et al. Laurdan and Prodan as Polarity-Sensitive Fluorescent Membrane Probes , 1998, Journal of Fluorescence.
[121] J. Seelig,et al. Leakage and lysis of lipid membranes induced by the lipopeptide surfactin , 2007, European Biophysics Journal.
[122] D. Nikolelis,et al. Artificial Lipid Membranes: Past, Present, and Future , 2017, Membranes.
[123] Bozhong Mu,et al. Surfactin effect on the physicochemical property of PC liposome , 2010 .
[124] Alexander P Lyubartsev,et al. Extension of the Slipids Force Field to Polyunsaturated Lipids. , 2016, The journal of physical chemistry. B.
[125] R. Brasseur,et al. Impacts of the carbonyl group location of ester bond on interfacial properties of sugar-based surfactants: experimental and computational evidences. , 2009, The journal of physical chemistry. B.
[126] C. Toniolo,et al. Alamethicin Supramolecular Organization in Lipid Membranes from 19F Solid-State NMR. , 2016, Biophysical journal.
[127] A. Ortiz,et al. Interaction of a bacterial dirhamnolipid with phosphatidylcholine membranes: a biophysical study. , 2009, Chemistry and physics of lipids.
[128] N. Nielsen,et al. Mechanisms of Peptide-Induced Pore Formation in Lipid Bilayers Investigated by Oriented 31P Solid-State NMR Spectroscopy , 2012, PloS one.
[129] T. Nylander,et al. Effect of fengycin, a lipopeptide produced by Bacillus subtilis, on model biomembranes. , 2008, Biophysical journal.
[130] P. Thonart,et al. The bacterial lipopeptide surfactin targets the lipid fraction of the plant plasma membrane to trigger immune‐related defence responses , 2011, Cellular microbiology.
[131] D. Choi,et al. Current Understandings of Plant Nonhost Resistance. , 2017, Molecular plant-microbe interactions : MPMI.
[132] R. Pastor,et al. Molecular modeling of lipid membrane curvature induction by a peptide: more than simply shape. , 2014, Biophysical journal.
[133] G. van Meer,et al. Cellular lipidomics , 2005, The EMBO journal.
[134] S. Mongrand,et al. Differential Effect of Plant Lipids on Membrane Organization , 2015, The Journal of Biological Chemistry.
[135] P. Schwille,et al. Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. , 1997, Biophysical journal.