Mesothelin, Stereocilin, and Otoancorin are predicted to have superhelical structures with ARM-type repeats
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Byungkook Lee | Yoonsoo Hahn | Ira Pastan | Manish S Patankar | I. Pastan | Byungkook Lee | B. Sathyanarayana | Y. Hahn | M. Patankar | Bangalore K Sathyanarayana
[1] M. Cohen-Salmon,et al. Otogelin: a glycoprotein specific to the acellular membranes of the inner ear. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[2] Mitchell Ho,et al. Megakaryocyte Potentiation Factor Cleaved from Mesothelin Precursor Is a Useful Tumor Marker in the Serum of Patients with Mesothelioma , 2006, Clinical Cancer Research.
[3] Kengo Kinoshita,et al. PrDOS: prediction of disordered protein regions from amino acid sequence , 2007, Nucleic Acids Res..
[4] A. Musk,et al. Mesothelin-family proteins and diagnosis of mesothelioma , 2003, The Lancet.
[5] Computer Corner,et al. Automated annotation of GPI anchor sites: case study , 2000 .
[6] David C. Jones,et al. GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. , 1999, Journal of molecular biology.
[7] C. Ponting,et al. Protein repeats: structures, functions, and evolution. , 2001, Journal of structural biology.
[8] Shenmin Zhang,et al. Mesothelin is a malignant factor and therapeutic vaccine target for pancreatic cancer , 2007, Molecular Cancer Therapeutics.
[9] P Bork,et al. Comparison of ARM and HEAT protein repeats. , 2001, Journal of molecular biology.
[10] J. Skolnick,et al. Ab initio modeling of small proteins by iterative TASSER simulations , 2007, BMC Biology.
[11] Leszek Rychlewski,et al. FFAS03: a server for profile–profile sequence alignments , 2005, Nucleic Acids Res..
[12] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[13] M. Oheda,et al. Characterization, Molecular Cloning and Expression of Megakaryocyte Potentiating Factor , 1996, Stem cells.
[14] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[15] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[16] Mitchell Ho,et al. Mesothelin-MUC16 binding is a high affinity, N-glycan dependent interaction that facilitates peritoneal metastasis of ovarian tumors , 2006, Molecular Cancer.
[17] D. Fischer,et al. Protein fold recognition using sequence‐derived predictions , 1996, Protein science : a publication of the Protein Society.
[18] J. Jung,et al. Protein structure alignment using environmental profiles. , 2000, Protein engineering.
[19] N. Umesaki,et al. Binding of Ovarian Cancer Antigen CA125/MUC16 to Mesothelin Mediates Cell Adhesion* , 2004, Journal of Biological Chemistry.
[20] Ira Pastan,et al. Mesothelin: a new target for immunotherapy. , 2004, Clinical cancer research : an official journal of the American Association for Cancer Research.
[21] L. Pellegrini,et al. Insights into Fanconi Anaemia from the structure of human FANCE , 2007, Nucleic acids research.
[22] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[23] C. Petit,et al. Mutations in a new gene encoding a protein of the hair bundle cause non-syndromic deafness at the DFNB16 locus , 2001, Nature Genetics.
[24] Sudhir Kumar,et al. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment , 2004, Briefings Bioinform..
[25] Rodrigo Lopez,et al. Multiple sequence alignment with the Clustal series of programs , 2003, Nucleic Acids Res..
[26] S. Barondes. Bifunctional properties of lectins: lectins redefined. , 1988, Trends in biochemical sciences.
[27] I. Pastan,et al. Mesothelin Is Not Required for Normal Mouse Development or Reproduction , 2000, Molecular and Cellular Biology.
[28] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[29] R. King,et al. Identification and application of the concepts important for accurate and reliable protein secondary structure prediction , 1996, Protein science : a publication of the Protein Society.
[30] G. Richardson,et al. The Mouse Tectorins , 1997, The Journal of Biological Chemistry.
[31] M. Lathrop,et al. Otoancorin, an inner ear protein restricted to the interface between the apical surface of sensory epithelia and their overlying acellular gels, is defective in autosomal recessive deafness DFNB22 , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[32] P. Wassarman,et al. Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear , 2002, BMC Cell Biology.
[33] I. Pastan,et al. Molecular cloning of mesothelin, a differentiation antigen present on mesothelium, mesotheliomas, and ovarian cancers. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[34] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[35] N. Yamaguchi,et al. Molecular Cloning and Expression of Megakaryocyte Potentiating Factor cDNA (*) , 1995, The Journal of Biological Chemistry.
[36] H. Gabius,et al. Plant lectins: Occurrence, biochemistry, functions and applications , 2001, Glycoconjugate Journal.
[37] Amy E. Keating,et al. Paircoil2: improved prediction of coiled coils from sequence , 2006, Bioinform..
[38] A. Lupas,et al. Predicting coiled coils from protein sequences , 1991, Science.
[39] Changhoon Kim,et al. SE: an algorithm for deriving sequence alignment from a pair of superimposed structures , 2009, BMC Bioinformatics.
[40] M. Sternberg,et al. Enhanced genome annotation using structural profiles in the program 3D-PSSM. , 2000, Journal of molecular biology.
[41] Arne Elofsson,et al. 3D-Jury: A Simple Approach to Improve Protein Structure Predictions , 2003, Bioinform..
[42] Marcin von Grotthuss,et al. Detecting distant homology with Meta-BASIC , 2004, Nucleic Acids Res..
[43] G. Blobel,et al. Crystallographic Analysis of the Recognition of a Nuclear Localization Signal by the Nuclear Import Factor Karyopherin α , 1998, Cell.
[44] P. T. Englund. The structure and biosynthesis of glycosyl phosphatidylinositol protein anchors. , 1993, Annual review of biochemistry.
[45] I. Pastan,et al. Phase I Study of SS1P, a Recombinant Anti-Mesothelin Immunotoxin Given as a Bolus I.V. Infusion to Patients with Mesothelin-Expressing Mesothelioma, Ovarian, and Pancreatic Cancers , 2007, Clinical Cancer Research.
[46] N. Yamaguchi,et al. A novel cytokine exhibiting megakaryocyte potentiating activity from a human pancreatic tumor cell line HPC-Y5. , 1994, The Journal of biological chemistry.
[47] Johannes Söding,et al. HHrep: de novo protein repeat detection and the origin of TIM barrels , 2006, Nucleic Acids Res..
[48] J. Rini,et al. Lectin structure. , 1995, Annual review of biophysics and biomolecular structure.
[49] C. Moskaluk,et al. Large-scale molecular and tissue microarray analysis of mesothelin expression in common human carcinomas. , 2003, Human pathology.
[50] Brian A. Hemmings,et al. The Structure of the Protein Phosphatase 2A PR65/A Subunit Reveals the Conformation of Its 15 Tandemly Repeated HEAT Motifs , 1999, Cell.
[51] P Bork,et al. Automated annotation of GPI anchor sites: case study C. elegans. , 2000, Trends in biochemical sciences.
[52] David Baker,et al. Protein structure prediction and analysis using the Robetta server , 2004, Nucleic Acids Res..
[53] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.