Identification of dilated cardiomyopathy signature genes through gene expression and network data integration.

[1]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[2]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[3]  H. Fechner,et al.  Genomic expression profiling of human inflammatory cardiomyopathy (DCMi) suggests novel therapeutic targets , 2006, Journal of Molecular Medicine.

[4]  Dechang Chen,et al.  Integrated analysis of independent gene expression microarray datasets improves the predictability of breast cancer outcome , 2007, BMC Genomics.

[5]  Martin Kuiper,et al.  BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks , 2005, Bioinform..

[6]  F. Azuaje,et al.  Linking Gene Expression and Functional Network Data in Human Heart Failure , 2007, PloS one.

[7]  D. Kass,et al.  Heart failure-associated alterations in troponin I phosphorylation impair ventricular relaxation-afterload , and force-frequency responses and systolic function , 2006 .

[8]  E. Lutgens,et al.  Analysis , Interpretation of Transcriptomics Data Genome-Wide Expression Studies of Atherosclerosis : Critical Issues in Methodology , 2006 .

[9]  R. Irizarry,et al.  Gene expression analysis of ischemic and nonischemic cardiomyopathy: shared and distinct genes in the development of heart failure. , 2005, Physiological genomics.

[10]  T. Louis,et al.  Effect of calcium supplementation on serum cholesterol and blood pressure. A randomized, double-blind, placebo-controlled, clinical trial. , 2000, Archives of family medicine.

[11]  Graziano Pesole,et al.  On the statistical assessment of classifiers using DNA microarray data , 2006, BMC Bioinformatics.

[12]  Ulrich Mansmann,et al.  Identification of a common gene expression signature in dilated cardiomyopathy across independent microarray studies. , 2006, Journal of the American College of Cardiology.

[13]  P. Finn,et al.  Hubs in biological interaction networks exhibit low changes in expression in experimental asthma , 2007, Molecular systems biology.

[14]  R. Tibshirani,et al.  Diagnosis of multiple cancer types by shrunken centroids of gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[15]  M. Daemen,et al.  Genome-Wide Expression Studies of Atherosclerosis: Critical Issues in Methodology, Analysis, Interpretation of Transcriptomics Data , 2006, Arteriosclerosis, thrombosis, and vascular biology.

[16]  K. Furie,et al.  Heart disease and stroke statistics--2008 update: a report from the American Heart Association Statistics Committee and Stroke Statistics Subcommittee. , 2007, Circulation.

[17]  Hanno Steen,et al.  Development of human protein reference database as an initial platform for approaching systems biology in humans. , 2003, Genome research.

[18]  Geoffrey S Ginsburg,et al.  Microarrays coming of age in cardiovascular medicine: standards, predictions, and biology. , 2006, Journal of the American College of Cardiology.

[19]  Jennifer Y. King,et al.  Pathway analysis of coronary atherosclerosis. , 2005, Physiological genomics.

[20]  C. O'connor,et al.  Platelet activation in patients with congestive heart failure: do we have enough evidence to consider clopidogrel? , 2003, American heart journal.

[21]  Dustin Boswell,et al.  Introduction to Support Vector Machines , 2002 .