Alveolar epithelial cells are competent producers of interstitial extracellular matrix with disease relevant plasticity in a human in vitro 3D model
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J. Malmström | G. Dellgren | G. Westergren-Thorsson | S. Lindstedt | O. Hallgren | C. Karlsson | O. Rosmark | Anna-Karin Larsson-Callerfelt | Måns Kadefors | Anders Ericsson
[1] G. Dellgren,et al. A tunable physiomimetic stretch system evaluated with precision cut lung slices and recellularized human lung scaffolds , 2022, Frontiers in Bioengineering and Biotechnology.
[2] M. Harmsen,et al. Chronic lung diseases: entangled in extracellular matrix , 2022, European Respiratory Review.
[3] S. Guttentag,et al. A single-cell atlas of mouse lung development. , 2021, Development.
[4] E. Åhrman,et al. CD105+CD90+CD13+ identifies a clonogenic subset of adventitial lung fibroblasts , 2021, Scientific Reports.
[5] Derek C. Liberti,et al. Genomic, epigenomic, and biophysical cues controlling the emergence of the lung alveolus , 2021, Science.
[6] R. Baric,et al. Human Lung Stem Cell-Based Alveolospheres Provide Insights into SARS-CoV-2-Mediated Interferon Responses and Pneumocyte Dysfunction , 2020, Cell Stem Cell.
[7] G. Washko,et al. Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis , 2020, Science Advances.
[8] J. Loyd,et al. Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis , 2020, Science Advances.
[9] C. Yao,et al. SARS-CoV-2 infection of primary human lung epithelium for COVID-19 modeling and drug discovery , 2020, bioRxiv.
[10] C. Yao,et al. Alveolar Epithelial Type II Cells as Drivers of Lung Fibrosis in Idiopathic Pulmonary Fibrosis , 2020, International journal of molecular sciences.
[11] S. Anders,et al. DEqMS: A Method for Accurate Variance Estimation in Differential Protein Expression Analysis* , 2020, Molecular & Cellular Proteomics.
[12] J. Malmström,et al. Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis , 2019, International journal of molecular sciences.
[13] J. Thompson,et al. RNA sequencing of transplant-stage idiopathic pulmonary fibrosis lung reveals unique pathway regulation , 2019, ERJ Open Research.
[14] Oscar Franzén,et al. PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data , 2019, Database J. Biol. Databases Curation.
[15] O. Eickelberg,et al. Quantitative proteomic profiling of extracellular matrix and site-specific collagen post-translational modifications in an in vitro model of lung fibrosis , 2019, Matrix biology plus.
[16] I. Batyrshin,et al. Soluble HLA-I and HLA-II Molecules Are Potential Prognostic Markers of Progression of Systemic and Local Inflammation in Patients with COPD , 2018, Disease markers.
[17] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..
[18] D. Lüdecke. Sjplot - Data Visualization For Statistics In Social Science. , 2018 .
[19] J. Malmström,et al. Quantifying extracellular matrix turnover in human lung scaffold cultures , 2018, Scientific Reports.
[20] E. Morrisey,et al. Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells. , 2017, Cell stem cell.
[21] T. Ivanciuc,et al. Hydrogen Sulfide: A Novel Player in Airway Development, Pathophysiology of Respiratory Diseases, and Antiviral Defenses , 2017, American journal of respiratory cell and molecular biology.
[22] N. Kohno,et al. Gene expression profiling of idiopathic interstitial pneumonias (IIPs): identification of potential diagnostic markers and therapeutic targets , 2017, BMC Medical Genetics.
[23] H. Schiller,et al. The instructive extracellular matrix of the lung: basic composition and alterations in chronic lung disease , 2017, European Respiratory Journal.
[24] T. Sasaki,et al. MOB1-YAP1/TAZ-NKX2.1 axis controls bronchioalveolar cell differentiation, adhesion and tumour formation , 2017, Oncogene.
[25] B. Hogan,et al. Lung organoids: current uses and future promise , 2017, Development.
[26] Peter Bankhead,et al. QuPath: Open source software for digital pathology image analysis , 2017, Scientific Reports.
[27] B. Stripp,et al. Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis. , 2016, JCI insight.
[28] I. Laird-Offringa,et al. Combinations of differentiation markers distinguish subpopulations of alveolar epithelial cells in adult lung. , 2016, American journal of physiology. Lung cellular and molecular physiology.
[29] Li Li,et al. Comprehensive analysis of gene-expression profile in chronic obstructive pulmonary disease , 2015, International journal of chronic obstructive pulmonary disease.
[30] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[31] M. Molina-Molina,et al. Lung fibrotic tenascin-C upregulation is associated with other extracellular matrix proteins and induced by TGFβ1 , 2014, BMC Pulmonary Medicine.
[32] D. Bates,et al. Fitting Linear Mixed-Effects Models Using lme4 , 2014, 1406.5823.
[33] Marco Y. Hein,et al. Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ * , 2014, Molecular & Cellular Proteomics.
[34] J. Connett,et al. Fibrotic extracellular matrix activates a profibrotic positive feedback loop. , 2014, The Journal of clinical investigation.
[35] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[36] H. Collard,et al. Pathogenesis of idiopathic pulmonary fibrosis. , 2014, Annual review of pathology.
[37] T. Saraya,et al. Virus-induced exacerbations in asthma and COPD , 2013, Front. Microbiol..
[38] V. Poletti,et al. Premature lung aging and cellular senescence in the pathogenesis of idiopathic pulmonary fibrosis and COPD/emphysema. , 2013, Translational research : the journal of laboratory and clinical medicine.
[39] Michael J. Cronce,et al. Type 2 alveolar cells are stem cells in adult lung. , 2013, The Journal of clinical investigation.
[40] B. Hinz,et al. Recent developments in myofibroblast biology: paradigms for connective tissue remodeling. , 2012, The American journal of pathology.
[41] Steven A. Carr,et al. The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices , 2011, Molecular & Cellular Proteomics.
[42] J. Whitsett,et al. Ectopic respiratory epithelial cell differentiation in bronchiolised distal airspaces in idiopathic pulmonary fibrosis , 2011, Thorax.
[43] K. Kuwano,et al. Accelerated epithelial cell senescence in IPF and the inhibitory role of SIRT6 in TGF-β-induced senescence of human bronchial epithelial cells. , 2011, American journal of physiology. Lung cellular and molecular physiology.
[44] P. Ballard,et al. HTII-280, a Biomarker Specific to the Apical Plasma Membrane of Human Lung Alveolar Type II Cells , 2010, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.
[45] J. Lasky,et al. TGF-β: Titan of Lung Fibrogenesis. , 2010, Current enzyme inhibition.
[46] J. Shute,et al. Fibrin formation by wounded bronchial epithelial cell layers in vitro is essential for normal epithelial repair and independent of plasma proteins , 2007, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[47] T. Tsuji,et al. Alveolar cell senescence in patients with pulmonary emphysema. , 2006, American journal of respiratory and critical care medicine.
[48] K. Miyazaki. Laminin‐5 (laminin‐332): Unique biological activity and role in tumor growth and invasion , 2006, Cancer science.
[49] R. Gonzalez,et al. Isolation and Culture of Pulmonary Alveolar Epithelial Type II Cells , 2002 .
[50] R. Pierce,et al. Expression Patterns of Laminin α 1 and α 5 in Human Lung during Development , 2000 .
[51] Y. Katakura,et al. Transforming growth factor beta triggers two independent-senescence programs in cancer cells. , 1999, Biochemical and biophysical research communications.
[52] J. Sanes,et al. Expression of Laminin α3, α4, and α5 Chains by Alveolar Epithelial Cells and Fibroblasts , 1998 .
[53] L. Sporn,et al. Thrombin cleavage-independent deposition of fibrinogen in extracellular matrices. , 1997, Blood.
[54] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[55] Y. Soini,et al. Laminin-5 gamma2 chain in cryptogenic organizing pneumonia and idiopathic pulmonary fibrosis. , 2004, American journal of respiratory and critical care medicine.
[56] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..
[57] R. Pierce,et al. Expression patterns of laminin alpha1 and alpha5 in human lung during development. , 2000, American journal of respiratory cell and molecular biology.
[58] J. Sanes,et al. Expression of laminin alpha3, alpha4, and alpha5 chains by alveolar epithelial cells and fibroblasts. , 1998, American journal of respiratory cell and molecular biology.