Link between truncated fractals and coupled oscillators in biological systems.

This article aims at providing a new theoretical insight into the fundamental question of the origin of truncated fractals in biological systems. It is well known that fractal geometry is one of the characteristics of living organisms. However, contrary to mathematical fractals which are self-similar at all scales, the biological fractals are truncated, i.e. their self-similarity extends at most over a few orders of magnitude of separation. We show that nonlinear coupled oscillators, modeling one of the basic features of biological systems, may generate truncated fractals: a truncated fractal pattern for basin boundaries appears in a simple mathematical model of two coupled nonlinear oscillators with weak dissipation. This fractal pattern can be considered as a particular hidden fractal property. At the level of sufficiently fine precision technique the truncated fractality acts as a simple structure, leading to predictability, but at a lower level of precision it is effectively fractal, limiting the predictability of the long-term behavior of biological systems. We point out to the generic nature of our result.

[1]  M. Riley,et al.  IN FRACTAL PHYSIOLOGY , 2022 .

[2]  P. Lindner,et al.  Fractal Geometry of Rocks , 1999 .

[3]  Truncated fractal basin boundaries in the pendulum with nonperiodic forcing , 1994 .

[4]  J. Yorke,et al.  Chaos, Strange Attractors, and Fractal Basin Boundaries in Nonlinear Dynamics , 1987, Science.

[5]  A Hunding,et al.  The effect of slow allosteric transitions in a coupled biochemical oscillator model. , 1999, Journal of theoretical biology.

[6]  Time delay effect in a three coupled oscillator system of the physarum plasmodium , 2000 .

[7]  Bruce J. West,et al.  Fractal physiology , 1994, IEEE Engineering in Medicine and Biology Magazine.

[8]  A L Goldberger,et al.  On a mechanism of cardiac electrical stability. The fractal hypothesis. , 1985, Biophysical journal.

[9]  Shimada,et al.  Circadian component influences the photoperiodic induction of diapause in a drosophilid fly, Chymomyza costata. , 2000, Journal of insect physiology.

[10]  T. Zielinska Gait Rhythm Generators of a Two Legged Walking Machine , 1997 .

[11]  S H Strogatz,et al.  Human sleep and circadian rhythms: a simple model based on two coupled oscillators , 1987, Journal of mathematical biology.

[12]  Simons,et al.  Long-range fractal correlations in DNA. , 1993, Physical Review Letters.

[13]  M. Zamir On fractal properties of arterial trees. , 1999, Journal of theoretical biology.

[14]  Nenad Pavin,et al.  Intermingled fractal Arnold tongues , 1998 .

[15]  L. Amaral,et al.  Multifractality in human heartbeat dynamics , 1998, Nature.

[16]  F. F. Seelig,et al.  Chaotic dynamics of two coupled biochemical oscillators , 1987 .

[17]  Shlomo Havlin,et al.  Fractals in Science , 1995 .

[18]  L. Glass,et al.  Global bifurcations of a periodically forced biological oscillator , 1984 .

[19]  M. Yamaguti,et al.  Chaos and Fractals , 1987 .

[20]  Bruce J. West,et al.  Fractal physiology for physicists: Lévy statistics , 1994 .

[21]  B. Masters,et al.  Fractal pattern formation in human retinal vessels , 1989 .

[22]  I. Caldas,et al.  Coupled biological oscillators in a cave insect. , 2000, Journal of theoretical biology.

[23]  Varghese,et al.  Truncated-fractal basin boundaries in forced pendulum systems. , 1988, Physical review letters.

[24]  B. Mandelbrot,et al.  The Fractal Geometry of Nature , 1984 .

[25]  Hai-Shan Wu,et al.  Self-Affinity and Lacunarity of Chromatin Texture in Benign and Malignant Breast Epithelial Cell Nuclei , 1998 .

[26]  P. Maini,et al.  Hierarchically coupled ultradian oscillators generating robust circadian rhythms. , 1997, Bulletin of mathematical biology.

[27]  J. Yorke,et al.  Fractal Basin Boundaries, Long-Lived Chaotic Transients, And Unstable-Unstable Pair Bifurcation , 1983 .

[28]  B. Hao,et al.  Directions in chaos , 1987 .

[29]  West,et al.  Complex fractal dimension of the bronchial tree. , 1991, Physical review letters.

[30]  Simple Mathematical Models for Complex Dynamics in Physiological Systems , 1988 .

[31]  G. Laurent,et al.  Who reads temporal information contained across synchronized and oscillatory spike trains? , 1998, Nature.

[32]  Jeffrey M. Hausdorff,et al.  Fractal mechanisms and heart rate dynamics. Long-range correlations and their breakdown with disease. , 1995, Journal of electrocardiology.

[33]  Nigel Gough,et al.  Fractals, chaos, and fetal heart rate , 1992, The Lancet.

[34]  A. Goldbeter,et al.  Alternating Oscillations and Chaos in a Model of Two Coupled Biochemical Oscillators Driving Successive Phases of the Cell Cycle , 1999, Annals of the New York Academy of Sciences.

[35]  Benoit B. Mandelbrot,et al.  Fractal Geometry of Nature , 1984 .

[36]  C. Peng,et al.  Fractal analysis of heart rate dynamics as a predictor of mortality in patients with depressed left ventricular function after acute myocardial infarction. TRACE Investigators. TRAndolapril Cardiac Evaluation. , 1999, The American journal of cardiology.

[37]  Bruce J. West,et al.  Fractals in physiology and medicine. , 1987, The Yale journal of biology and medicine.

[38]  N. Rashevsky,et al.  Mathematical biology , 1961, Connecticut medicine.

[39]  J. Yorke,et al.  The transition to chaotic attractors with riddled basins , 1994 .

[40]  G. Ermentrout The behavior of rings of coupled oscillators , 1985, Journal of mathematical biology.

[41]  B. Antkowiak,et al.  Ultradian rhythms in Desmodium. , 1998, Chronobiology international.

[42]  L. Edelstein-Keshet Nonlinear oscillations in biology and chemistry , 1987 .

[43]  A. Goldbeter,et al.  Chaos and birhythmicity in a model for circadian oscillations of the PER and TIM proteins in drosophila , 1999, Journal of theoretical biology.

[44]  J. Kalda FRACTAL MODEL OF BLOOD VESSEL SYSTEM , 1993 .

[45]  Winslow,et al.  Complex dynamics in coupled cardiac pacemaker cells. , 1993, Physical review letters.

[46]  D. Bernardo,et al.  A Model of Two Nonlinear Coupled Oscillators for the Study of Heartbeat Dynamics , 1998 .

[47]  Daniel A. Lidar,et al.  Is the Geometry of Nature Fractal? , 1998, Science.

[48]  Y. Kuramoto,et al.  Dephasing and bursting in coupled neural oscillators. , 1995, Physical review letters.

[49]  M. Sernetz,et al.  The organism as bioreactor. Interpretation of the reduction law of metabolism in terms of heterogeneous catalysis and fractal structure. , 1985, Journal of theoretical biology.

[50]  R. M. Rosenberg,et al.  On Nonlinear Vibrations of Systems with Many Degrees of Freedom , 1966 .

[51]  P. Pfeifer,et al.  Microbial growth patterns described by fractal geometry , 1990, Journal of bacteriology.

[52]  H. Szeto,et al.  Fractal properties in fetal breathing dynamics. , 1992, The American journal of physiology.

[53]  R. Voss,et al.  Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. , 1992, Physical review letters.

[54]  C. Peng,et al.  Long-range correlations in nucleotide sequences , 1992, Nature.

[55]  J. Yorke,et al.  Fractal basin boundaries , 1985 .

[56]  E. Ott Chaos in Dynamical Systems: Contents , 1993 .

[57]  C. Wilson,et al.  Coupled oscillator model of the dopaminergic neuron of the substantia nigra. , 2000, Journal of neurophysiology.

[58]  J Brickmann,et al.  Self similarity of protein surfaces. , 1992, Biophysical journal.

[59]  Eldred,et al.  Physical mechanisms underlying neurite outgrowth: A quantitative analysis of neuronal shape. , 1990, Physical review letters.

[60]  P. Bressloff,et al.  Mode locking and Arnold tongues in integrate-and-fire neural oscillators. , 1999, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[61]  Celso Grebogi,et al.  Multi-dimensioned intertwined basin boundaries: Basin structure of the kicked double rotor , 1987 .

[62]  S. Honma,et al.  Response curve, free-running period, and activity time in circadian locomotor rhythm of rats. , 1985, The Japanese journal of physiology.

[63]  M A Hofman,et al.  The fractal geometry of convoluted brains. , 1991, Journal fur Hirnforschung.

[64]  B. Mandelbrot Self-Affine Fractals and Fractal Dimension , 1985 .

[65]  Hofman Ma The fractal geometry of convoluted brains. , 1991 .