4 – Proteome and metabolome analyses for food authentication
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[1] S. Gygi,et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.
[2] S. Gygi,et al. Correlation between Protein and mRNA Abundance in Yeast , 1999, Molecular and Cellular Biology.
[3] A. Davies,et al. Study of the Use of Molecular Spectroscopy for the Authentication of Extra Virgin Olive Oils. Part I: Fourier Transform Raman Spectroscopy , 2000 .
[4] K Chapman,et al. The ProteinChip Biomarker System from Ciphergen Biosystems: a novel proteomics platform for rapid biomarker discovery and validation. , 2001, Biochemical Society transactions.
[5] Tommy J Phelps,et al. Metabolomics and microarrays for improved understanding of phenotypic characteristics controlled by both genomics and environmental constraints. , 2002, Current opinion in biotechnology.
[6] F. Chaplen,et al. Developments in metabolic engineering. , 1997, Current opinion in biotechnology.
[7] H. Boucherie,et al. Identification by mass spectrometry of two‐dimensional gel electrophoresis‐separated proteins extracted from lager brewing yeast , 2001, Electrophoresis.
[8] Philip J. Dale,et al. Potential for the environmental impact of transgenic crops , 2002, Nature Biotechnology.
[9] Beat Mollet,et al. Functional foods: at the frontier between food and pharma. , 2002, Current opinion in biotechnology.
[10] H. Noteborn,et al. Chemical fingerprinting for the evaluation of unintended secondary metabolic changes in transgenic food crops. , 2000, Journal of biotechnology.
[11] S. Fields,et al. A novel genetic system to detect proteinprotein interactions , 1989, Nature.
[12] Gary D Bader,et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry , 2002, Nature.
[13] S. N. Davey,et al. The rapid identification of intact microorganisms using mass spectrometry , 1996, Nature Biotechnology.
[14] P. Andrews,et al. Virtual 2-D gel electrophoresis: visualization and analysis of the E. coli proteome by mass spectrometry. , 2001, Analytical chemistry.
[15] W. Wiechert,et al. Metabolic state of Zymomonas mobilis in glucose-, fructose-, and xylose-fed continuous cultures as analysed by 13C- and 31P-NMR spectroscopy , 1999, Archives of Microbiology.
[16] Shaoyi Liu,et al. Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells , 2002, Nature Biotechnology.
[17] P. Legrain. Protein domain networking , 2002, Nature Biotechnology.
[18] J. Lay,et al. MALDI-TOF mass spectrometry of bacteria. , 2001, Mass spectrometry reviews.
[19] D. Eisenberg,et al. Protein function in the post-genomic era , 2000, Nature.
[20] C. Gray,et al. Two‐dimensional map of the proteome of Haemophilus influenzae , 2000, Electrophoresis.
[21] A Bairoch,et al. High-throughput mass spectrometric discovery of protein post-translational modifications. , 1999, Journal of molecular biology.
[22] E. Li-Chan,et al. The applications of Raman spectroscopy in food science , 1996 .
[23] Dieter Stoll,et al. Protein microarray technology. , 2002, Frontiers in bioscience : a journal and virtual library.
[24] Thomas P Conrads,et al. The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification. , 2002, Biochemical and biophysical research communications.
[25] Yuqin Dai,et al. Detection and identification of low-mass peptides and proteins from solvent suspensions of Escherichia coli by high performance liquid chromatography fractionation and matrix-assisted laser desorption/ionization mass spectrometry. , 1999, Rapid communications in mass spectrometry : RCM.
[26] T. Kuhara,et al. Gas chromatographic‐mass spectrometric metabolic profiling of patients with fatal infantile mitochondrial myopathy with de Toni‐Fanconi‐Debré syndrome , 1996, Acta paediatrica Japonica : Overseas edition.
[27] George G. Khachatourians,et al. Liabilities and economics of transgenic crops , 2002, Nature Biotechnology.
[28] S. Gygi,et al. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[29] Andrew Emili,et al. De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging , 2002, Nature Biotechnology.
[30] J. Shabanowitz,et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae , 2002, Nature Biotechnology.
[31] M. Emmett,et al. Identification of intact proteins in mixtures by alternated capillary liquid chromatography electrospray ionization and LC ESI infrared multiphoton dissociation Fourier transform ion cyclotron resonance mass spectrometry. , 1999, Analytical chemistry.
[32] M. Gerstein,et al. Analysis of yeast protein kinases using protein chips , 2000, Nature Genetics.
[33] Gerard Downey,et al. Food and food ingredient authentication by mid-infrared spectroscopy and chemometrics , 1998 .
[34] J. Nielsen,et al. Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models. , 1999, Journal of biotechnology.
[35] S. Weinberger,et al. Recent advancements in surface‐enhanced laser desorption/ionization‐time of flight‐mass spectrometry , 2000, Electrophoresis.
[36] S. Schreiber,et al. Printing proteins as microarrays for high-throughput function determination. , 2000, Science.
[37] D B Kell,et al. Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry and Fourier transform infrared spectroscopy. , 2000, Analytical chemistry.
[38] B. Blagoev,et al. Microarrays go live--new prospects for proteomics. , 2001, Trends in biochemical sciences.
[39] O. Fiehn,et al. Metabolite profiling for plant functional genomics , 2000, Nature Biotechnology.
[40] E. Winzeler,et al. Genomics, gene expression and DNA arrays , 2000, Nature.
[41] S. Patterson,et al. Automated LC-LC-MS-MS platform using binary ion-exchange and gradient reversed-phase chromatography for improved proteomic analyses. , 2001, Journal of chromatography. B, Biomedical sciences and applications.
[42] D. Kell,et al. Pyrolysis mass spectrometry and its applications in biotechnology. , 1996, Current opinion in biotechnology.
[43] Gary D Bader,et al. Analyzing yeast protein–protein interaction data obtained from different sources , 2002, Nature Biotechnology.
[44] T. Kuhara,et al. A new chemical diagnostic method for inborn errors of metabolism by mass spectrometry-rapid, practical, and simultaneous urinary metabolites analysis. , 1996, Mass spectrometry reviews.
[45] Douglas B. Kell,et al. Characterisation of intact microorganisms using electrospray ionisation mass spectrometry , 1999 .
[46] D. Kell,et al. Rapid and Quantitative Detection of the Microbial Spoilage of Meat by Fourier Transform Infrared Spectroscopy and Machine Learning , 2002, Applied and Environmental Microbiology.
[47] R. Trethewey,et al. Gene discovery via metabolic profiling. , 2001, Current opinion in biotechnology.
[48] D. Kell,et al. A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations , 2001, Nature Biotechnology.
[49] Gillian M. Greenway,et al. Sample manipulation in micro total analytical systems , 2002 .
[50] Royston Goodacre,et al. Progress toward the Rapid Nondestructive Assessment of the Floral Origin of European Honey Using Dispersive Raman Spectroscopy , 2002 .
[51] H. Westerhoff,et al. Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway , 2001, FEBS letters.
[52] K. Voorhees,et al. Identification of bacterial proteins observed in MALDI TOF mass spectra from whole cells. , 1999, Analytical chemistry.
[53] A. Madonna,et al. On-probe sample pretreatment for the detection of proteins above 15 KDa from whole cell bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. , 2000, Rapid communications in mass spectrometry : RCM.
[54] I. Raskin,et al. Plants and human health in the twenty-first century. , 2002, Trends in biotechnology.
[55] D. Chelius,et al. Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry. , 2002, Analytical chemistry.
[56] C. Watanabe,et al. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[57] Oliver Fiehn,et al. Combining Genomics, Metabolome Analysis, and Biochemical Modelling to Understand Metabolic Networks , 2001, Comparative and functional genomics.
[58] Uwe Claussen,et al. Mass spectrometry meets chip technology: A new proteomic tool in cancer research? , 2001, Electrophoresis.
[59] P. Demirev,et al. Characterization of intact microorganisms by MALDI mass spectrometry. , 2001, Mass spectrometry reviews.
[60] D. Kell,et al. Metabolic profiling using direct infusion electrospray ionisation mass spectrometry for the characterisation of olive oils. , 2002, The Analyst.
[61] J. Lüthy,et al. Detection strategies for food authenticity and genetically modified foods , 1999 .
[62] J. Yates,et al. Direct analysis of protein complexes using mass spectrometry , 1999, Nature Biotechnology.
[63] Douglas B. Kell,et al. Metabolomics and Machine Learning: Explanatory Analysis of Complex Metabolome Data Using Genetic Programming to Produce Simple, Robust Rules , 2004, Molecular Biology Reports.
[64] Bert Popping,et al. The application of biotechnological methods in authenticity testing. , 2002, Journal of biotechnology.
[65] P. Mitchell. A perspective on protein microarrays , 2002, Nature Biotechnology.
[66] M E Belov,et al. High-throughput proteomics using high-efficiency multiple-capillary liquid chromatography with on-line high-performance ESI FTICR mass spectrometry. , 2001, Analytical chemistry.
[67] N. Ahn,et al. Monitoring post-translational modification of proteins with allosteric ribozymes , 2002, Nature Biotechnology.
[68] Erik Millstone,et al. Beyond ‘substantial equivalence’ , 1999, Nature.
[69] F. Pineda,et al. Bioinformatics and mass spectrometry for microorganism identification: proteome-wide post-translational modifications and database search algorithms for characterization of intact H. pylori. , 2001, Analytical chemistry.
[70] D B Kell,et al. Discrimination of aerobic endospore-forming bacteria via electrospray-lonization mass spectrometry of whole cell suspensions. , 2001, Analytical chemistry.
[71] Marta Cascante,et al. Metabolic profiling of cell growth and death in cancer: applications in drug discovery. , 2002, Drug discovery today.
[72] Gary Hardiman,et al. Protein microarrays: challenges and promises. , 2002, Pharmacogenomics.
[73] C. Fenselau,et al. Profiling of bacteria by fast atom bombardment mass spectrometry. , 1987, Analytical chemistry.
[74] H. Williams,et al. Metabolic profiling of genetic disorders: a multitissue (1)H nuclear magnetic resonance spectroscopic and pattern recognition study into dystrophic tissue. , 2001, Analytical biochemistry.
[75] D. Kell,et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY Rapid Commun. Mass Spectrom. 2002; 16: 1276±1286 , 2022 .
[76] Sterner,et al. Signal suppression in electrospray ionization Fourier transform mass spectrometry of multi-component samples , 2000, Journal of mass spectrometry : JMS.
[77] R. Aebersold,et al. Peptide electroextraction for direct coupling of in-gel digests with capillary LC-MS/MS for protein identification and sequencing. , 2000, Analytical chemistry.
[78] F Baganz,et al. Systematic functional analysis of the yeast genome. , 1998, Trends in biotechnology.
[79] R. Goodacre,et al. Fourier transform infrared spectroscopy and chemometrics as a tool for the rapid detection of other vegetable fats mixed in cocoa butter , 2001 .
[80] Hanno Steen,et al. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. , 2002, Trends in biotechnology.
[81] J. Wojcik,et al. The protein–protein interaction map of Helicobacter pylori , 2001, Nature.
[82] Thomas Szyperski,et al. Intracellular Carbon Fluxes in Riboflavin-Producing Bacillussubtilis during Growth on Two-Carbon Substrate Mixtures , 2002, Applied and Environmental Microbiology.
[83] C. Barbas,et al. Development and validation of a capillary electrophoresis method for direct measurement of isocitric, citric, tartaric and malic acids as adulteration markers in orange juice. , 2000, Journal of chromatography. A.
[84] Roger E Bumgarner,et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. , 2001, Science.
[85] D. Krizman,et al. Picoliter‐Scale Protein Microarrays by Laser Direct Write , 2002, Biotechnology progress.
[86] B. V. Baar. Characterisation of bacteria by matrix-assisted laser desorption/ionisation and electrospray mass spectrometry. , 2000 .
[87] Dirk Wolters,et al. Proteomic survey of metabolic pathways in rice , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[88] M. Mann,et al. Analysis of proteins and proteomes by mass spectrometry. , 2001, Annual review of biochemistry.
[89] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[90] Barry Schweitzer,et al. Measuring proteins on microarrays. , 2002, Current opinion in biotechnology.
[91] Koji Otsuka,et al. Capillary electrophoretic techniques toward the metabolome analysis , 2001 .
[92] Milan Mrksich,et al. Selective immobilization of proteins to self-assembled monolayers presenting active site-directed capture ligands , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[93] Gordon A Anderson,et al. Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[94] S. Oliver. Proteomics: Guilt-by-association goes global , 2000, Nature.
[95] C. Fenselau,et al. Characterization of the protein subset desorbed by MALDI from whole bacterial cells. , 2001, Analytical Chemistry.
[96] D. Schubert. A different perspective on GM food , 2002, Nature Biotechnology.
[97] M. Mann,et al. Proteomic analysis of post-translational modifications , 2003, Nature Biotechnology.
[98] D. Hochstrasser,et al. From Proteins to Proteomes: Large Scale Protein Identification by Two-Dimensional Electrophoresis and Arnino Acid Analysis , 1996, Bio/Technology.
[99] S. Oliver. Functional genomics: lessons from yeast. , 2002, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[100] B. Futcher,et al. A Sampling of the Yeast Proteome , 1999, Molecular and Cellular Biology.
[101] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[102] Jochen Förster,et al. A functional genomics approach using metabolomics and in silico pathway analysis. , 2002, Biotechnology and bioengineering.
[103] Sam F. Y. Li,et al. Protein Microarrays on ITO Surfaces by a Direct Covalent Attachment Scheme , 2002 .
[104] S. Kingsmore,et al. Multiplexed protein profiling on microarrays by rolling-circle amplification , 2002, Nature Biotechnology.
[105] G. Siuzdak,et al. Probing viruses with mass spectrometry. , 1998, Journal of mass spectrometry : JMS.
[106] H. Kuiper,et al. Assessment of the food safety issues related to genetically modified foods. , 2001, The Plant journal : for cell and molecular biology.
[107] P. Kearns,et al. Substantial equivalence is a useful tool , 1999, Nature.
[108] F. Reniero,et al. Use of pyrolysis–mass spectrometry in food analysis: applications in the food analysis laboratory of the European Commissions’ Joint Research Centre , 1999 .
[109] J. Ramírez,et al. Tandem mass spectrometry of intact proteins for characterization of biomarkers from Bacillus cereus T spores. , 2001, Analytical chemistry.
[110] J. Lindon,et al. Metabonomics: a platform for studying drug toxicity and gene function , 2002, Nature Reviews Drug Discovery.
[111] O. Fiehn. Metabolomics – the link between genotypes and phenotypes , 2004, Plant Molecular Biology.
[112] Allison A. Snow,et al. Transgenic crops—why gene flow matters , 2002, Nature Biotechnology.
[113] R. Atkinson,et al. Overexpression of Polygalacturonase in Transgenic Apple Trees Leads to a Range of Novel Phenotypes Involving Changes in Cell Adhesion1 , 2002, Plant Physiology.
[114] H. Miller. Substantial equivalence: Its uses and abuses , 1999, Nature Biotechnology.
[115] J. Yates,et al. Large-scale analysis of the yeast proteome by multidimensional protein identification technology , 2001, Nature Biotechnology.
[116] A. Shevchenko,et al. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. , 1996, Analytical chemistry.
[117] P Berndt,et al. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography , 1999, Electrophoresis.
[118] Royston Goodacre,et al. Rapid and quantitative detection of the microbial spoilage of muscle foods: current status and future trends. , 2001 .
[119] T. Ferenci,et al. Effect of Slow Growth on Metabolism of Escherichia coli, as Revealed by Global Metabolite Pool (“Metabolome”) Analysis , 1998, Journal of bacteriology.
[120] Philip J. Dale,et al. Potential for the environmental impact of transgenic crops , 2002, Nature Biotechnology.
[121] T. Veenstra,et al. Characterization of microorganisms and biomarker development from global ESI-MS/MS analyses of cell lysates. , 2000, Analytical chemistry.
[122] J. Yates,et al. MASS SPECTRAL INVESTIGATIONS ON MICROORGANISMS , 2000 .
[123] D. Kell,et al. Flow-injection electrospray ionization mass spectrometry of crude cell extracts for high-throughput bacterial identification , 2002, Journal of the American Society for Mass Spectrometry.
[124] Nikola Tolić,et al. Mass spectrometic detection for capillary isoelectric focusing separations of complex protein mixtures , 2000 .
[125] Jean Rossier,et al. Systematic identification of mitochondrial proteins by LC-MS/MS. , 2002, Analytical chemistry.
[126] M. Gerstein,et al. Subcellular localization of the yeast proteome. , 2002, Genes & development.