Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean

[1]  M. Blair,et al.  Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean , 2012, BMC Genetics.

[2]  F. Servant,et al.  Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time , 2012, Theoretical and Applied Genetics.

[3]  M. Stitt,et al.  Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize , 2012, Proceedings of the National Academy of Sciences.

[4]  W. Muir,et al.  Genome-wide association mapping including phenotypes from relatives without genotypes. , 2012, Genetics research.

[5]  Aaron Jackson,et al.  Unraveling the Complex Trait of Harvest Index with Association Mapping in Rice (Oryza sativa L.) , 2012, PloS one.

[6]  K. Tamura,et al.  The development of highly transferable intron-spanning markers for temperate forage grasses , 2012, Molecular Breeding.

[7]  Lindsey J. Leach,et al.  Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars , 2012, Theoretical and Applied Genetics.

[8]  M. Blair,et al.  Saturation of an Intra-Gene Pool Linkage Map: Towards a Unified Consensus Linkage Map for Fine Mapping and Synteny Analysis in Common Bean , 2011, PloS one.

[9]  S. Veerasamy,et al.  Species Discrimination, Population Structure and Linkage Disequilibrium in Eucalyptus camaldulensis and Eucalyptus tereticornis Using SSR Markers , 2011, PloS one.

[10]  Xiangdong Liu,et al.  Population Structure and Genetic Diversity in a Rice Core Collection (Oryza sativa L.) Investigated with SSR Markers , 2011, PloS one.

[11]  P. Hayes,et al.  Association Mapping of Malting Quality Quantitative Trait Loci in Winter Barley: Positive Signals from Small Germplasm Arrays , 2011 .

[12]  T. Shah,et al.  Comparative SNP and Haplotype Analysis Reveals a Higher Genetic Diversity and Rapider LD Decay in Tropical than Temperate Germplasm in Maize , 2011, PloS one.

[13]  H. T. Stalker,et al.  Population structure and marker–trait association analysis of the US peanut (Arachis hypogaea L.) mini-core collection , 2011, Theoretical and Applied Genetics.

[14]  Long-Xi Yu,et al.  Association mapping and gene–gene interaction for stem rust resistance in CIMMYT spring wheat germplasm , 2011, Theoretical and Applied Genetics.

[15]  T. Mizuno,et al.  Phytochrome-interacting factor 4 and 5 (PIF4 and PIF5) activate the homeobox ATHB2 and auxin-inducible IAA29 genes in the coincidence mechanism underlying photoperiodic control of plant growth of Arabidopsis thaliana. , 2011, Plant & cell physiology.

[16]  M. Blair,et al.  SNP marker diversity in common bean (Phaseolus vulgaris L.) , 2011, Theoretical and Applied Genetics.

[17]  H. Piepho,et al.  A general method for controlling the genome-wide type I error rate in linkage and association mapping experiments in plants , 2011, Heredity.

[18]  Peter J. Bradbury,et al.  Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize , 2011, Proceedings of the National Academy of Sciences.

[19]  T. Shah,et al.  Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.) , 2011, Theoretical and Applied Genetics.

[20]  Florent Murat,et al.  Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution. , 2011, The Plant journal : for cell and molecular biology.

[21]  C. Perrot-Rechenmann,et al.  AUXIN RESPONSE FACTOR8 Regulates Arabidopsis Petal Growth by Interacting with the bHLH Transcription Factor BIGPETALp[C][W] , 2011, Plant Cell.

[22]  Joaquín Dopazo,et al.  Genome analysis Advance Access publication February 18, 2011 B2G-FAR, a species-centered GO annotation repository , 2022 .

[23]  A. Sharma,et al.  Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development , 2011, Molecular Genetics and Genomics.

[24]  H. T. Stalker,et al.  Population structure and marker-trait association analysis of the US peanut (Arachis hypogaea L.) mini-core collection Ming Li WangSivakumar SukumaranNoelle A. BarkleyZhenbang Chen • Charles Y. ChenBaozhu GuoRoy N. PittmanH. Thomas Stalker • C. Corley HolbrookGary A. PedersonJianming Yu , 2011 .

[25]  Peter J. Bradbury,et al.  Assessment of Power and False Discovery Rate in Genome-Wide Association Studies using the BarleyCAP Germplasm , 2011 .

[26]  A. Navabi,et al.  Association mapping of common bacterial blight resistance QTL in Ontario bean breeding populations , 2011, BMC Plant Biology.

[27]  Pengyin Chen,et al.  Multiplex single nucleotide polymorphism (SNP) assay for detection of soybean mosaic virus resistance genes in soybean , 2011, Theoretical and Applied Genetics.

[28]  T. Close,et al.  Genic SNP markers and legume synteny reveal candidate genes underlying QTL for Macrophomina phaseolina resistance and maturity in cowpea [Vigna unguiculata (L) Walp.] , 2011, BMC Genomics.

[29]  D. Balding,et al.  Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome , 2010, Proceedings of the National Academy of Sciences.

[30]  M. Blair,et al.  QTL Analysis and Effect of the fin Locus on Tropical Adaptation in an Inter-Gene Pool Common Bean Population , 2010, Tropical Plant Biology.

[31]  Qifa Zhang,et al.  Genome-wide association studies of 14 agronomic traits in rice landraces , 2010, Nature Genetics.

[32]  I. Rao,et al.  Development of a Mesoamerican intra-genepool genetic map for quantitative trait loci detection in a drought tolerant × susceptible common bean (Phaseolus vulgaris L.) cross , 2010, Molecular Breeding.

[33]  Jean-Marcel Ribaut,et al.  Joint linkage–linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize , 2010, Proceedings of the National Academy of Sciences.

[34]  P. Cregan,et al.  High-throughput SNP discovery and assay development in common bean , 2010, BMC Genomics.

[35]  S. Nuzhdin,et al.  Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation. , 2010, The Plant journal : for cell and molecular biology.

[36]  H. Kouchi,et al.  How Many Peas in a Pod? Legume Genes Responsible for Mutualistic Symbioses Underground , 2010, Plant & cell physiology.

[37]  R. Papa,et al.  Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.) , 2010, Theoretical and Applied Genetics.

[38]  M. Blair,et al.  QTL for seed iron and zinc concentration and content in a Mesoamerican common bean (Phaseolus vulgaris L.) population , 2010, Theoretical and Applied Genetics.

[39]  J. Rafalski,et al.  Association genetics in crop improvement. , 2010, Current opinion in plant biology.

[40]  A. Campa,et al.  Mapping of QTLs for morpho-agronomic and seed quality traits in a RIL population of common bean (Phaseolus vulgaris L.) , 2010, Theoretical and Applied Genetics.

[41]  Bjarni J. Vilhjálmsson,et al.  Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines , 2010 .

[42]  Agnes P Chan,et al.  Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis) , 2010, BMC Plant Biology.

[43]  M. Blair,et al.  Single strand conformation polymorphism based SNP and Indel markers for genetic mapping and synteny analysis of common bean (Phaseolus vulgaris L.) , 2009, BMC Genomics.

[44]  G. Stacey,et al.  Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection1[C][W][OA] , 2009, Plant Physiology.

[45]  M. Blair,et al.  Genetic diversity, seed size associations and population structure of a core collection of common beans (Phaseolus vulgaris L.) , 2009, Theoretical and Applied Genetics.

[46]  E. Bitocchi,et al.  Linkage disequilibrium and population structure in wild and domesticated populations of Phaseolus vulgaris L. , 2009, Evolutionary applications.

[47]  B. Payseur,et al.  A genomewide comparison of population structure at STRPs and nearby SNPs in humans. , 2009, Molecular biology and evolution.

[48]  R. Henry,et al.  Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. , 2009, Plant biotechnology journal.

[49]  Carlos H. Galeano,et al.  CEL I Nuclease Digestion for SNP Discovery and Marker Development in Common Bean ( Phaseolus vulgaris L.) , 2009 .

[50]  A. Melchinger,et al.  Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis , 2009, BMC Genomics.

[51]  I. Graham,et al.  Yield assessment of integument-led seed growth following targeted repair of auxin response factor 2. , 2008, Plant biotechnology journal.

[52]  S. Tabata,et al.  Legume Anchor Markers Link Syntenic Regions Between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis , 2008, Genetics.

[53]  M. Gore,et al.  Status and Prospects of Association Mapping in Plants , 2008 .

[54]  Montgomery Slatkin,et al.  Linkage disequilibrium — understanding the evolutionary past and mapping the medical future , 2008, Nature Reviews Genetics.

[55]  Hans-Peter Piepho,et al.  Comparison of Mixed-Model Approaches for Association Mapping , 2008, Genetics.

[56]  E. Buckler,et al.  Empirical Comparison of Simple Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize Diversity and Relatedness , 2007, PloS one.

[57]  Edward S. Buckler,et al.  TASSEL: software for association mapping of complex traits in diverse samples , 2007, Bioinform..

[58]  Xavier Draye,et al.  Meta-analysis of Polyploid Cotton QTL Shows Unequal Contributions of Subgenomes to a Complex Network of Genes and Gene Clusters Implicated in Lint Fiber Development , 2007, Genetics.

[59]  D. Bhattramakki,et al.  A comparison of simple sequence repeat and single nucleotide polymorphism marker technologies for the genotypic analysis of maize (Zea mays L.) , 2007, Theoretical and Applied Genetics.

[60]  Hank C Wu,et al.  Phosphorus Stress in Common Bean: Root Transcript and Metabolic Responses1[W][OA] , 2007, Plant Physiology.

[61]  K. Chase,et al.  A Soybean Transcript Map: Gene Distribution, Haplotype and Single-Nucleotide Polymorphism Analysis , 2007, Genetics.

[62]  M. Luckow,et al.  Development of nuclear gene-derived molecular markers linked to legume genetic maps , 2006, Molecular Genetics and Genomics.

[63]  G. Stacey,et al.  Genetics and functional genomics of legume nodulation. , 2006, Current opinion in plant biology.

[64]  P. Smouse,et al.  genalex 6: genetic analysis in Excel. Population genetic software for teaching and research , 2006 .

[65]  M. Blair,et al.  QTL analysis of yield traits in an advanced backcross population derived from a cultivated Andean × wild common bean (Phaseolus vulgaris L.) cross , 2006, Theoretical and Applied Genetics.

[66]  Joseph R. Ecker,et al.  Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation , 2005, Development.

[67]  G. Evanno,et al.  Detecting the number of clusters of individuals using the software structure: a simulation study , 2005, Molecular ecology.

[68]  Irina Mitina,et al.  AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator. , 2005, The Plant journal : for cell and molecular biology.

[69]  Kejun Liu,et al.  PowerMarker: an integrated analysis environment for genetic marker analysis , 2005, Bioinform..

[70]  P. Morrell,et al.  Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[71]  C. Fankhauser,et al.  bHLH class transcription factors take centre stage in phytochrome signalling. , 2005, Trends in plant science.

[72]  C. Chevalet,et al.  Measuring genetic distances between breeds: use of some distances in various short term evolution models , 2002, Genetics Selection Evolution.

[73]  A. Rafalski Applications of single nucleotide polymorphisms in crop genetics. , 2002, Current opinion in plant biology.

[74]  T. Michaels,et al.  Genetic Mapping of Agronomic Traits in Common Bean , 2002 .

[75]  Charles R Cantor,et al.  The use of MassARRAY technology for high throughput genotyping. , 2002, Advances in biochemical engineering/biotechnology.

[76]  G. Hagen,et al.  Auxin Response Factors , 2001, Journal of Plant Growth Regulation.

[77]  P. Donnelly,et al.  Inference of population structure using multilocus genotype data. , 2000, Genetics.