Automated synthesis of oligosaccharides as a basis for drug discovery

Carbohydrates present both potential and problems — their biological relevance has been recognized, but problems in procuring sugars rendered them a difficult class of compounds to handle in drug discovery efforts. The development of the first automated solid-phase oligosaccharide synthesizer and other methods to assemble defined oligosaccharides rapidly has fundamentally altered this situation. This review describes how quick access to oligosaccharides has not only contributed to biological, biochemical and biophysical investigations, but also to drug discovery. Particular focus will be placed on the development of carbohydrate-based vaccines, defined heparin oligosaccharides and aminoglycosides that have recently begun to affect drug discovery.

[1]  J Zhang,et al.  Sugar nucleotide regeneration beads (superbeads): a versatile tool for the practical synthesis of oligosaccharides. , 2001, Journal of the American Chemical Society.

[2]  A. Descoteaux,et al.  The lipophosphoglycan of Leishmania parasites. , 1992, Annual review of microbiology.

[3]  Chi‐Huey Wong,et al.  Enzymes in Organic Synthesis: Application to the Problems of Carbohydrate Recognition. Part 2. , 1995 .

[4]  P. Seeberger,et al.  Oligosaccharide synthesis with glycosyl phosphate and dithiophosphate triesters as glycosylating agents. , 2001, Journal of the American Chemical Society.

[5]  P. Seeberger,et al.  Automated solid-phase synthesis of protected tumor-associated antigen and blood group determinant oligosaccharides. , 2004, Angewandte Chemie.

[6]  L. Kotra,et al.  Aminoglycosides modified by resistance enzymes display diminished binding to the bacterial ribosomal aminoacyl-tRNA site. , 2002, Chemistry & biology.

[7]  C. V. van Boeckel,et al.  A synthetic antithrombin III binding pentasaccharide is now a drug! What comes next? , 2004, Angewandte Chemie.

[8]  C. Figdor,et al.  Identification of DC-SIGN, a Novel Dendritic Cell–Specific ICAM-3 Receptor that Supports Primary Immune Responses , 2000, Cell.

[9]  P. Gerold,et al.  Signal transduction in macrophages by glycosylphosphatidylinositols of Plasmodium, Trypanosoma, and Leishmania: activation of protein tyrosine kinases and protein kinase C by inositolglycan and diacylglycerol moieties. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[10]  P. Livingston Augmenting the immunogenicity of carbohydrate tumor antigens. , 1995, Seminars in cancer biology.

[11]  Chi‐Huey Wong,et al.  Glycosyl Phosphites as Glycosylation Reagents: Scope and Mechanism , 1994 .

[12]  John B. Shoven,et al.  I , Edinburgh Medical and Surgical Journal.

[13]  D. Goldblatt Recent developments in bacterial conjugate vaccines. , 1998, Journal of medical microbiology.

[14]  Chi‐Huey Wong,et al.  Enzymes in Organic Synthesis: Application to the Problems of Carbohydrate Recognition (Part 1) , 1995 .

[15]  D. Sherrington,et al.  Polymer-supported reactions in organic synthesis , 1980 .

[16]  Allen,et al.  From the Laboratory to the Clinic: A Retrospective on Fully Synthetic Carbohydrate-Based Anticancer Vaccines Frequently used abbreviations are listed in the appendix. , 2000, Angewandte Chemie.

[17]  D. Solter,et al.  New globoseries glycosphingolipids in human teratocarcinoma reactive with the monoclonal antibody directed to a developmentally regulated antigen, stage-specific embryonic antigen 3. , 1983, The Journal of biological chemistry.

[18]  S. Shoda,et al.  AN EFFICIENT METHOD FOR GLUCOSYLATION OF HYDROXY COMPOUNDS USING GLUCOPYRANOSYL FLUORIDE , 1981 .

[19]  P. Seeberger,et al.  Automated solid-phase synthesis of a branched Leishmania cap tetrasaccharide. , 2001, Organic letters.

[20]  M. Disney,et al.  Aminoglycoside microarrays to explore interactions of antibiotics with RNAs and proteins. , 2004, Chemistry.

[21]  M. Caruthers,et al.  Chemical synthesis of DNA and DNA analogs , 1991 .

[22]  P. Gerold,et al.  Conservation of structure among glycosylphosphatidylinositol toxins from different geographic isolates of Plasmodium falciparum. , 1999, Molecular and biochemical parasitology.

[23]  E. Handman,et al.  The glycoconjugate derived from a Leishmania major receptor for macrophages is a suppressogenic, disease‐promoting antigen in murine cutaneous leishmaniasis , 1986, Parasite immunology.

[24]  J. Marcusson Die Nitrierung der Braunkohle , 1921 .

[25]  J. Lassaletta,et al.  SYNTHESIS OF THE HEXASACCHARIDE MOIETY OF GLOBO H (HUMAN BREAST CANCER) ANTIGEN , 2006 .

[26]  R. Linhardt,et al.  Heparin-protein interactions. , 2002, Angewandte Chemie.

[27]  R. Boelens,et al.  Structural studies by 1H/13C two-dimensional and three-dimensional HMQC-NOE at natural abundance on complex carbohydrates , 1990 .

[28]  M. Petitou,et al.  1976-1983, a critical period in the history of heparin: the discovery of the antithrombin binding site. , 2003, Biochimie.

[29]  Steven V. Ley,et al.  Tuning glycoside reactivity: New tool for efficient oligosaccharide synthesis , 1998 .

[30]  Alex Matter,et al.  Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug , 2002, Nature Reviews Drug Discovery.

[31]  R. Laine,et al.  A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05 x 10(12) structures for a reducing hexasaccharide: the Isomer Barrier to development of single-method saccharide sequencing or synthesis systems. , 1994, Glycobiology.

[32]  J. Herbert,et al.  Oligosaccharides corresponding to the regular sequence of heparin: chemical synthesis and interaction with FGF-2. , 1999, Bioorganic & medicinal chemistry.

[33]  G S Kansas,et al.  Selectins and their ligands: current concepts and controversies. , 1996, Blood.

[34]  J. Thorson,et al.  A General Enzymatic Method for the Synthesis of Natural and “Unnatural” UDP- and TDP-Nucleotide Sugars , 2000 .

[35]  S. Danishefsky,et al.  From the Laboratory to the Clinic: A Retrospective on Fully Synthetic Carbohydrate-Based Anticancer Vaccines , 2000 .

[36]  A. Fattom,et al.  Capsular polysaccharide-protein conjugate vaccines , 1996 .

[37]  Jinq-chyi Lee,et al.  Synthesis of heparin oligosaccharides. , 2004, Journal of the American Chemical Society.

[38]  Yuan Cheng,et al.  Glycosylation of unreactive substrates , 1989 .

[39]  Ten Feizi,et al.  Oligosaccharide microarrays for high-throughput detection and specificity assignments of carbohydrate-protein interactions , 2002, Nature Biotechnology.

[40]  Peter H Seeberger,et al.  Rapid synthesis of a glycosylphosphatidylinositol-based malaria vaccine using automated solid-phase oligosaccharide synthesis. , 2002, Journal of the American Chemical Society.

[41]  L. Howells,et al.  Modulation of signal-transduction pathways by chemopreventive agents. , 2000, Biochemical Society transactions.

[42]  K. Karlsson Pathogen-host protein-carbohydrate interactions as the basis of important infections. , 2001, Advances in experimental medicine and biology.

[43]  S. Schreiber,et al.  Expanding the functional group compatibility of small-molecule microarrays: discovery of novel calmodulin ligands. , 2003, Angewandte Chemie.

[44]  P. Seeberger,et al.  Synthesis and use of glycosyl phosphates as glycosyl donors. , 1999, Organic letters.

[45]  T. Boone,et al.  Role of glycosylation on the secretion and biological activity of erythropoietin. , 1992, Biochemistry.

[46]  P. Garegg Thioglycosides as glycosyl donors in oligosaccharide synthesis. , 1997, Advances in carbohydrate chemistry and biochemistry.

[47]  W D Wilson,et al.  The search for structure-specific nucleic acid-interactive drugs: effects of compound structure on RNA versus DNA interaction strength. , 1993, Biochemistry.

[48]  P. Seeberger,et al.  Modular synthesis of heparin oligosaccharides. , 2003, Chemistry.

[49]  M. Disney,et al.  The use of carbohydrate microarrays to study carbohydrate-cell interactions and to detect pathogens. , 2004, Chemistry & biology.

[50]  R. Schmidt,et al.  Anomeric-oxygen activation for glycoside synthesis: the trichloroacetimidate method. , 1994, Advances in carbohydrate chemistry and biochemistry.

[51]  M. Disney,et al.  Aminoglycoside microarrays to study antibiotic resistance. , 2004, Angewandte Chemie.

[52]  M. Redondo-Horcajo,et al.  The Activation of Fibroblast Growth Factors by Heparin: Synthesis, Structure, and Biological Activity of Heparin‐Like Oligosaccharides , 2001, Chembiochem : a European journal of chemical biology.

[53]  Stuart L. Schreiber,et al.  Small-Molecule Microarrays: Covalent Attachment and Screening of Alcohol-Containing Small Molecules on Glass Slides , 2000 .

[54]  S. Ménard,et al.  Generation of monoclonal antibodies reacting with normal and cancer cells of human breast. , 1983, Cancer research.

[55]  Peter H Seeberger,et al.  Automated carbohydrate synthesis to drive chemical glycomics. , 2003, Chemical communications.

[56]  Chi‐Huey Wong,et al.  Synthesis of Complex Carbohydrates and Glycoconjugates: Enzyme-Based and Programmable One-Pot Strategies , 2001 .

[57]  M. Caruthers,et al.  Gene synthesis machines: DNA chemistry and its uses. , 1985, Science.

[58]  George M Whitesides,et al.  Polyvalent Interactions in Biological Systems: Implications for Design and Use of Multivalent Ligands and Inhibitors. , 1998, Angewandte Chemie.

[59]  P. Konradsson,et al.  Direct elaboration of pent-4-enyl glycosides into disaccharides , 1988 .

[60]  Chi‐Huey Wong Carbohydrate-based drug discovery. , 2003 .

[61]  M. Mann,et al.  Aspects of the sequencing of carbohydrates and oligonucleotides by matrix-assisted laser desorption/ionization post-source decay. , 1996, Rapid Communications in Mass Spectrometry.

[62]  K. Karlsson,et al.  Bacterium-host protein-carbohydrate interactions and pathogenicity. , 1999, Biochemical Society transactions.

[63]  W. Koenigs,et al.  Ueber einige Derivate des Traubenzuckers und der Galactose , 1901 .

[64]  T. Doi,et al.  Combinatorial synthesis of trisaccharides via solution-phase one-pot glycosylation , 2000 .

[65]  Werner Frommer,et al.  Chemistry and Biochemistry of Microbial α‐Glucosidase Inhibitors , 1981 .

[66]  Roger A. Laine,et al.  Invited Commentary: A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05 × 1012 structures for a reducing hexasaccharide: the Isomer Barrier to development of single-method saccharide sequencing or synthesis systems , 1994 .

[67]  C. Cordon-Cardo,et al.  Selection of tumor antigens as targets for immune attack using immunohistochemistry: I. Focus on gangliosides , 1997, International journal of cancer.

[68]  G. Boons,et al.  New set of orthogonal protecting groups for the modular synthesis of heparan sulfate fragments. , 2003, Organic letters.

[69]  Chi‐Huey Wong Enzymatic and chemo-enzymatic synthesis of carbohydrates , 1995 .

[70]  Peter H. Seeberger,et al.  Automated Solid-Phase Synthesis of Oligosaccharides , 2001, Science.

[71]  R. Eisenberg,et al.  A Novel Role for 3-O-Sulfated Heparan Sulfate in Herpes Simplex Virus 1 Entry , 1999, Cell.

[72]  C. Walsh Molecular mechanisms that confer antibacterial drug resistance , 2000, Nature.

[73]  L. Hood,et al.  Large-scale and automated DNA sequence determination. , 1991, Science.

[74]  Matthew D Disney,et al.  Detection of bacteria with carbohydrate-functionalized fluorescent polymers. , 2004, Journal of the American Chemical Society.

[75]  P. Seeberger,et al.  Solid-phase oligosaccharide synthesis and combinatorial carbohydrate libraries. , 2000, Chemical reviews.

[76]  P. Seeberger,et al.  Solution and solid-support synthesis of a potential leishmaniasis carbohydrate vaccine. , 2001, The Journal of organic chemistry.

[77]  D. T. Elmore,et al.  Solid‐phase peptide synthesis: a practical approach , 1990 .

[78]  P. Seeberger,et al.  Synthetic GPI as a candidate anti-toxic vaccine in a model of malaria , 2002, Nature.

[79]  C. Wong,et al.  Anomeric reactivity-based one-pot oligosaccharide synthesis: a rapid route to oligosaccharide libraries. , 2000, The Journal of organic chemistry.

[80]  P. Seeberger,et al.  Linear synthesis of the tumor-associated carbohydrate antigens Globo-H, SSEA-3, and Gb3. , 2002, The Journal of organic chemistry.

[81]  Scope and Mechanism , 2022 .

[82]  Chi‐Huey Wong,et al.  Toward Automated Synthesis of Oligosaccharides and Glycoproteins , 2001, Science.