Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
暂无分享,去创建一个
Philip L. F. Johnson | S. Rasmussen | T. Sicheritz-Pontén | S. Brunak | R. Nielsen | M. Stoneking | G. Hannon | S. D. Pena | L. Orlando | M. Lahr | Anna-Sapfo Malaspinas | O. Lao | A. Albrechtsen | I. Moltke | J. V. Moreno-Mayar | P. Campos | E. Willerslev | MingKun Li | M. Kayser | J. Jensen | M. Raghavan | Jesper Stenderup | E. Hodges | T. Higham | T. Price | Michael Degiorgio | M. Rasmussen | Yong Wang | H. Schroeder | M. Allentoft | Claudia Rodrigues-Carvalho | Silvia Reis | M. Bastos | Francisca Sagredo | V. F. Gonçalves | D. Bernardo | Ana T. Duggan | J. Heinemeier | J. Olsen | W. Neves | Ida Moltke | Thomas Sicheritz-Pontén | Simon Rasmussen
[1] D. Eltis. Voyages: The Trans-Atlantic Slave Trade Database , 2016 .
[2] Yong Wang,et al. bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) , 2014, Bioinform..
[3] Jonathan Scott Friedlaender,et al. Maternal history of Oceania from complete mtDNA genomes: contrasting ancient diversity with recent homogenization due to the Austronesian expansion. , 2014, American journal of human genetics.
[4] L. Pagani,et al. Genome-wide evidence of Austronesian–Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar , 2014, Proceedings of the National Academy of Sciences.
[5] T. Korneliussen,et al. Estimating Individual Admixture Proportions from Next Generation Sequencing Data , 2013, Genetics.
[6] Philip L. F. Johnson,et al. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse , 2013, Nature.
[7] H. Buckley,et al. The First New Zealanders: Patterns of Diet and Mobility Revealed through Isotope Analysis , 2013, PloS one.
[8] Philip L. F. Johnson,et al. A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes , 2013, Current Biology.
[9] T. Kivisild,et al. Identification of Polynesian mtDNA haplogroups in remains of Botocudo Amerindians from Brazil , 2013, Proceedings of the National Academy of Sciences.
[10] Paul D. Shaw,et al. Using Tablet for visual exploration of second-generation sequencing data , 2013, Briefings Bioinform..
[11] M. Stoneking,et al. A highly unstable recent mutation in human mtDNA. , 2013, American journal of human genetics.
[12] D. McKey,et al. Historical collections reveal patterns of diffusion of sweet potato in Oceania obscured by modern plant movements and recombination , 2013, Proceedings of the National Academy of Sciences.
[13] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[14] Adrian W. Briggs,et al. A High-Coverage Genome Sequence from an Archaic Denisovan Individual , 2012, Science.
[15] David B. Witonsky,et al. Reconstructing Native American Population History , 2012, Nature.
[16] Stinus Lindgreen,et al. AdapterRemoval: easy cleaning of next-generation sequencing reads , 2012, BMC Research Notes.
[17] Joseph K. Pickrell,et al. Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data , 2012, PLoS genetics.
[18] Yong Wang,et al. An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia , 2011, Science.
[19] D. Reich,et al. Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania. , 2011, American journal of human genetics.
[20] David Reich,et al. Testing for ancient admixture between closely related populations. , 2011, Molecular biology and evolution.
[21] Claudia Rodrigues-Carvalho,et al. Human mobility on the Brazilian coast: an analysis of strontium isotopes in archaeological human remains from Forte Marechal Luz Sambaqui. , 2011, Anais da Academia Brasileira de Ciencias.
[22] Roberto Cabeza,et al. Annals of the New York Academy of Sciences the Porous Boundaries between Explicit and Implicit Memory: Behavioral and Neural Evidence , 2022 .
[23] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[24] N. Thomas. Islanders: The Pacific in the Age of Empire , 2011 .
[25] E. Matisoo-Smith,et al. Polynesians in America : pre-Columbian contacts with the New World , 2011 .
[26] Carl P. Lipo,et al. High-precision radiocarbon dating shows recent and rapid initial human colonization of East Polynesia , 2010, Proceedings of the National Academy of Sciences.
[27] Philip L. F. Johnson,et al. Genetic history of an archaic hominin group from Denisova Cave in Siberia , 2010, Nature.
[28] Claudia Rodrigues-Carvalho,et al. Recovering mitochondrial DNA lineages of extinct Amerindian nations in extant homopatric Brazilian populations , 2010, Investigative Genetics.
[29] M. Stoneking,et al. Demographic History of Oceania Inferred from Genome-wide Data , 2010, Current Biology.
[30] S. Pääbo,et al. Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products , 2010, PloS one.
[31] Huanming Yang,et al. Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants , 2010, Nature Genetics.
[32] Josyf Mychaleckyj,et al. Robust relationship inference in genome-wide association studies , 2010, Bioinform..
[33] Jinchuan Xing,et al. Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping. , 2010, Genomics.
[34] Sharon R Grossman,et al. Integrating common and rare genetic variation in diverse human populations , 2010, Nature.
[35] K. Henke. A model for memory systems based on processing modes rather than consciousness , 2010, Nature Reviews Neuroscience.
[36] Matthias Meyer,et al. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. , 2010, Cold Spring Harbor protocols.
[37] Philip L. F. Johnson,et al. A Draft Sequence of the Neandertal Genome , 2010, Science.
[38] M. Cox,et al. Complete mitochondrial DNA sequences provide new insights into the Polynesian motif and the peopling of Madagascar , 2010, European Journal of Human Genetics.
[39] Larry R Squire,et al. Memory and Brain Systems: 1969–2009 , 2009, The Journal of Neuroscience.
[40] David H. Alexander,et al. Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.
[41] Elisha D O Roberson,et al. Visualization of Shared Genomic Regions and Meiotic Recombination in High-Density SNP Data , 2009, PloS one.
[42] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[43] Zhenyu Xuan,et al. Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing , 2009, Nature Protocols.
[44] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[45] J. Baker,et al. The use of strontium isotopes as an indicator of migration in human and pig Lapita populations in the Bismarck Archipelago, Papua New Guinea , 2009 .
[46] Ken A. Paller,et al. An Electrophysiological Signature of Unconscious Recognition Memory , 2009, Nature Neuroscience.
[47] S. Fitzpatrick,et al. Examining dispersal mechanisms for the translocation of chicken (Gallus gallus) from Polynesia to South America , 2009 .
[48] O. Hanotte,et al. Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA , 2008, Proceedings of the National Academy of Sciences.
[49] S. Fitzpatrick,et al. Seafaring simulations and the origin of prehistoric settlers to Madagascar , 2008 .
[50] M. Feldman,et al. Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .
[51] M. Stoneking,et al. Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. , 2008, American journal of human genetics.
[52] Zhaohui S. Qin,et al. A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.
[53] Michael Hofreiter,et al. Ancient DNA extraction from bones and teeth , 2007, Nature Protocols.
[54] C. Ramsey,et al. Quality Assurance of Ultrafiltered Bone Dating , 2007, Radiocarbon.
[55] P. Underhill,et al. Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific. , 2006, Molecular biology and evolution.
[56] Alexandros Stamatakis,et al. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..
[57] Vladimir Pericliev. Significant Lexical Similarities between a Language of Brazil and Some Languages of Southeast Asia and Oceania: From Typolocial Perspective , 2006 .
[58] N. Risch,et al. Estimation of individual admixture: Analytical and study design considerations , 2005, Genetic epidemiology.
[59] L R Squire,et al. On the contribution of perceptual fluency and priming to recognition memory , 2005, Cognitive, affective & behavioral neuroscience.
[60] Y. Nishio,et al. Lithium, strontium, and neodymium isotopic compositions of oceanic island basalts in the Polynesian region: constraints on a Polynesian HIMU origin , 2005 .
[61] C E Buck,et al. Shcal04 Southern Hemisphere Calibration, 0–11.0 Cal Kyr BP , 2004, Radiocarbon.
[62] R. Ward,et al. Informativeness of genetic markers for inference of ancestry. , 2003, American journal of human genetics.
[63] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[64] M. Stephens,et al. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.
[65] Élise Patole-Edoumba. Baert Annie : « Le paradis terrestre, un mythe espagnol en Océanie. Les voyages de Mendana et de Quiros 1567-1606 » , 2003 .
[66] A. Yonelinas. The Nature of Recollection and Familiarity: A Review of 30 Years of Research , 2002 .
[67] M. Hernández,et al. Craniometric variation and the settlement of the Americas: testing hypotheses by means of R-matrix and matrix correlation analyses. , 2001, American journal of physical anthropology.
[68] John P. Huelsenbeck,et al. MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..
[69] Elizabeth M. Smigielski,et al. dbSNP: the NCBI database of genetic variation , 2001, Nucleic Acids Res..
[70] P. Donnelly,et al. Inference of population structure using multilocus genotype data. , 2000, Genetics.
[71] M. Kohn,et al. Altered states: effects of diagenesis on fossil tooth chemistry , 1999 .
[72] Erik Meijer,et al. Delete-m Jackknife for Unequal m , 1999, Stat. Comput..
[73] M. Stoneking,et al. ‘Polynesian’ mtDNA in the Malagasy , 1995, Nature Genetics.
[74] Morris Moscovitch,et al. Models of consciousness and memory. , 1995 .
[75] Robert L. Greene,et al. Spacing effects on implicit memory tests. , 1990 .
[76] J. Darroch,et al. Canonical and principal components of shape , 1985 .
[77] L. Atalla,et al. Trace Element and Strontium Isotope Constraints on the Origin and Evolution of Paraná Continental Flood Basalts of Santa Catarina State (Southern Brazil) , 1985 .
[78] H. M. Ross. Slavers in Paradise: The Peruvian Slave Trade in Polynesia, 1862–1864. H. E. MAUDE , 1984 .
[79] N. Brody,et al. Affective discrimination of stimuli that are not recognized: effects of shadowing, masking, and cerebral laterality. , 1983, Journal of experimental psychology. Learning, memory, and cognition.
[80] L. Jacoby,et al. On the relationship between autobiographical memory and perceptual learning. , 1981, Journal of experimental psychology. General.
[81] H. Maude. Slavers in Paradise: The Peruvian Slave Trade in Polynesia, 1862-1864 , 1981 .
[82] W. Howells,et al. Cranial Variation in Man: A Study by Multivariate Analysis of Patterns of Difference Among Recent Human Populations , 1975 .
[83] Marian W. Smith,et al. American Indians in the Pacific: The Theory behind the Kon-Tiki Expedition , 1953 .
[84] Spencer Fullerton Baird,et al. Beiträge zur Naturgeschichte von Brasilien , 1825 .