Bioinformatics-Driven Big Data Analytics in Microbial Research
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Ratna Prabha | D. P. Singh | Anil Rai | A. Rai | R. Prabha | D. P. Singh
[1] David J. Edwards,et al. Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data , 2013, Microbial Informatics and Experimentation.
[2] Eve S. McCulloch. Harnessing the Power of Big Data in Biological Research , 2013 .
[3] Jens Nielsen,et al. Metabolic footprinting in microbiology: methods and applications in functional genomics and biotechnology. , 2008, Trends in biotechnology.
[4] Paulien Hogeweg,et al. The Roots of Bioinformatics in Theoretical Biology , 2011, PLoS Comput. Biol..
[5] Jingfa Xiao,et al. Bioinformatics clouds for big data manipulation , 2012, Biology Direct.
[6] Vivien Marx. Genomics in the clouds , 2013, Nature Methods.
[7] James E. Galagan,et al. Genomics of the fungal kingdom: Insights into eukaryotic biology , 2005 .
[8] K. Shinozaki,et al. Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions , 2011, Plant & cell physiology.
[9] Y Wang,et al. Targeted metabolomics and mass spectrometry. , 2010, Advances in protein chemistry and structural biology.
[10] Weiwen Zhang,et al. Integrating multiple 'omics' analysis for microbial biology: application and methodologies. , 2010, Microbiology.
[11] R. Albert,et al. The large-scale organization of metabolic networks , 2000, Nature.
[12] Oliver Fiehn,et al. Combining Genomics, Metabolome Analysis, and Biochemical Modelling to Understand Metabolic Networks , 2001, Comparative and functional genomics.
[13] M. Metzker. Sequencing technologies — the next generation , 2010, Nature Reviews Genetics.
[14] A. Demain,et al. Recombinant organisms for production of industrial products , 2010, Bioengineered bugs.
[15] Susan M. Huse,et al. Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.
[16] K. Zengler,et al. Tapping into microbial diversity , 2004, Nature Reviews Microbiology.
[17] N. Kyrpides. Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream , 2009, Nature Biotechnology.
[18] S. Giovannoni,et al. The uncultured microbial majority. , 2003, Annual review of microbiology.
[19] Geert Potters,et al. Systems biology of the cell , 2010 .
[20] A. Bansal,et al. Bioinformatics in microbial biotechnology – a mini review , 2005 .
[21] J R Yates,et al. Analysis of the microbial proteome. , 2000, Current opinion in microbiology.
[22] David Edwards,et al. Plant bioinformatics: from genome to phenome. , 2004, Trends in biotechnology.
[23] Elena Litchman,et al. Mighty small: Observing and modeling individual microbes becomes big science , 2013, Proceedings of the National Academy of Sciences.
[24] J. Handelsman,et al. Toward functional genomics in bacteria: analysis of gene expression in Escherichia coli from a bacterial artificial chromosome library of Bacillus cereus. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[25] A. Halpern,et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.
[26] J. Lederberg,et al. `Ome Sweet `Omics--A Genealogical Treasury of Words , 2001 .
[27] Michael S. Waterman,et al. Introduction to computational biology , 1995 .
[28] Ramon Massana,et al. Study of Genetic Diversity of Eukaryotic Picoplankton in Different Oceanic Regions by Small-Subunit rRNA Gene Cloning and Sequencing , 2001, Applied and Environmental Microbiology.
[29] Royston Goodacre,et al. Metabolomic technologies and their application to the study of plants and plant-host interactions. , 2007, Physiologia plantarum.
[30] Heribert Cypionka,et al. Microbial Diversity in Coastal Subsurface Sediments: a Cultivation Approach Using Various Electron Acceptors and Substrate Gradients , 2005, Applied and Environmental Microbiology.
[31] H. Meyer,et al. Bioinformatics in proteomics. , 2004, Current pharmaceutical biotechnology.
[32] David A. Fenstermacher,et al. Introduction to bioinformatics , 2005, J. Assoc. Inf. Sci. Technol..
[33] G. Siuzdak,et al. Innovation: Metabolomics: the apogee of the omics trilogy , 2012, Nature Reviews Molecular Cell Biology.
[34] Marc W Kirschner,et al. The Meaning of Systems Biology , 2005, Cell.
[35] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..
[36] A. N. Spiridonov,et al. Congruent evolution of different classes of non-coding DNA in prokaryotic genomes. , 2002, Nucleic acids research.
[37] Vladimir Shulaev,et al. Metabolomics technology and bioinformatics , 2006, Briefings Bioinform..
[38] J. Handelsman. Metagenomics: Application of Genomics to Uncultured Microorganisms , 2004, Microbiology and Molecular Biology Reviews.
[39] Vasileios Megalooikonomou,et al. Similarity Searching of Medical Image Data in Distributed Systems: Facilitating Telemedicine Applications , 2011, Int. J. Comput. Model. Algorithms Medicine.
[40] D. Josić,et al. Application of proteomics in biotechnology – Microbial proteomics , 2008, Biotechnology journal.
[41] Christos A. Ouzounis. Bioinformatics and the theoretical foundations of molecular biology , 2002, Bioinform..
[42] Sutapa Bose,et al. A Broader View: Microbial Enzymes and Their Relevance in Industries, Medicine, and Beyond , 2013, BioMed research international.
[43] Luonan Chen,et al. Computational systems biology in the big data era , 2013, BMC Systems Biology.
[44] S. Quake,et al. Single-cell genomics , 2011, Nature Methods.
[45] Julian Parkhill,et al. Microbiology in the post-genomic era , 2008, Nature Reviews Microbiology.
[46] D. Hochstrasser,et al. From Proteins to Proteomes: Large Scale Protein Identification by Two-Dimensional Electrophoresis and Arnino Acid Analysis , 1996, Bio/Technology.
[47] G. Dougan,et al. Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology , 2012, PLoS pathogens.
[48] Veljo Kisand,et al. Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools , 2013, BMC Genomics.
[49] T. Ideker,et al. Modeling cellular machinery through biological network comparison , 2006, Nature Biotechnology.
[50] R. Daniel,et al. Metagenomic Analyses: Past and Future Trends , 2010, Applied and Environmental Microbiology.
[51] Daniel Luis Notari,et al. Dis2PPI: A Workflow Designed to Integrate Proteomic and Genetic Disease Data , 2012, Int. J. Knowl. Discov. Bioinform..
[52] F. Fernández,et al. Microbial Secondary Metabolites Production and Strain Improvement , 2003 .
[53] Royston Goodacre,et al. TARDIS-based microbial metabolomics: time and relative differences in systems. , 2011, Trends in microbiology.
[54] J. Stelling. Mathematical models in microbial systems biology. , 2004, Current opinion in microbiology.
[55] R. Graham,et al. Microbial proteomics: a mass spectrometry primer for biologists , 2007, Microbial cell factories.
[56] H. Wirth,et al. Analysis of large-scale molecular biological data using self-organizing maps , 2012 .
[57] T. Hankemeier,et al. Metabolomics-based systems biology and personalized medicine: moving towards n = 1 clinical trials? , 2006, Pharmacogenomics.
[58] David A. Rasko,et al. Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions , 2013, Nature Reviews Genetics.
[59] Mario Cannataro. Computational proteomics: management and analysis of proteomics data , 2008, Briefings Bioinform..
[60] C. Sander,et al. Challenging times for bioinformatics , 1995, Nature.
[61] T. Ideker,et al. A new approach to decoding life: systems biology. , 2001, Annual review of genomics and human genetics.
[62] Roy D. Welch,et al. Practical Applications of Bacterial Functional Genomics , 2007, Biotechnology & genetic engineering reviews.
[63] Roy D. Sleator,et al. 'Big data', Hadoop and cloud computing in genomics , 2013, J. Biomed. Informatics.
[64] Y. Kamagata,et al. Cultivation of Uncultured Fastidious Microbes , 2005 .
[65] Aryya Gangopadhyay,et al. Methods, Models, and Computation for Medical Informatics , 2012 .
[66] Christoph Steinbeck,et al. Computational metabolomics – a field at the boundaries of cheminformatics and bioinformatics , 2011, J. Cheminformatics.
[67] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[68] Dong Xu,et al. Bioinformatics and its applications in plant biology. , 2006, Annual review of plant biology.
[69] Yinjie J. Tang,et al. Separation and mass spectrometry in microbial metabolomics. , 2008, Current opinion in microbiology.
[70] Anne M. Evans,et al. Organization of GC/MS and LC/MS metabolomics data into chemical libraries , 2010, J. Cheminformatics.
[71] E. Delong,et al. Microbial population genomics and ecology: the road ahead. , 2004, Environmental microbiology.
[72] Jonathan A. Eisen,et al. Microbial genome sequencing , 2000, Nature.
[73] Karen E Nelson,et al. The future of microbial genomics. , 2003, Environmental microbiology.
[74] Ratna Prabha,et al. Bioinformatics-Assisted Microbiological Research: Tasks, Developments and Upcoming Challenges , 2012 .
[75] S. Salzberg,et al. The Value of Complete Microbial Genome Sequencing (You Get What You Pay For) , 2002, Journal of bacteriology.
[76] R. Gerszten,et al. Targeted Metabolomics , 2012, Current protocols in molecular biology.
[77] J. D. Watson. The human genome project: past, present, and future. , 1990, Science.
[78] Jason E. Stewart,et al. Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.
[79] S Falkow,et al. Microbial pathogenesis: genomics and beyond. , 1997, Science.
[80] N. Goodman. Biological data becomes computer literate: new advances in bioinformatics. , 2002, Current opinion in biotechnology.
[81] Christoph Steinbeck,et al. So what have data standards ever done for us? The view from metabolomics , 2010, Genome Medicine.