Plasmacytoid dendritic cell heterogeneity is defined by CXCL10 expression following TLR7 stimulation

Plasmacytoid dendritic cells (pDCs) play a critical role in bridging the innate and adaptive immune systems. pDCs are specialized type I interferon (IFN) producers, which has implicated them as initiators of autoimmune pathogenesis. However, little is known about the downstream effectors of type I IFN signaling that amplify autoimmune responses. Here, we have used a chemokine reporter mouse to determine the CXCR3 ligand responses in DCs subsets. Following TLR7 stimulation, conventional type 1 and type 2 DCs (cDC1 and cDC2, respectively) uniformly upregulate CXCL10. By contrast, the proportion of chemokine positive pDCs was significantly less, and stable CXCL10+ and CXCL10− populations could be distinguished. CXCL9 expression was induced in all cDC1s, in half of the cDC2 but not by pDCs. The requirement for IFNAR signaling for chemokine reporter expression was interrogated by receptor blocking and deficiency and shown to be critical for CXCR3 ligand expression in Flt3‐ligand‐derived DCs. Chemokine‐producing potential was not concordant with the previously identified markers of pDC heterogeneity. Finally, we show that CXCL10+ and CXCL10− populations are transcriptionally distinct, expressing unique transcriptional regulators, IFN signaling molecules, chemokines, cytokines, and cell surface markers. This work highlights CXCL10 as a downstream effector of type I IFN signaling and suggests a division of labor in pDCs subtypes that likely impacts their function as effectors of viral responses and as drivers of inflammation.

[1]  M. Colonna,et al.  Imiquimod clears tumors in mice independent of adaptive immunity by converting pDCs into tumor-killing effector cells. , 2012, The Journal of clinical investigation.

[2]  H. Brühl,et al.  Expression and Characterization of the Chemokine Receptors CCR2 and CCR5 in Mice1 , 2001, The Journal of Immunology.

[3]  Michael J. Wilson,et al.  Haemopedia: An Expression Atlas of Murine Hematopoietic Cells , 2016, Stem cell reports.

[4]  V. D’Agati,et al.  Genetic evidence for the role of plasmacytoid dendritic cells in systemic lupus erythematosus , 2014, The Journal of experimental medicine.

[5]  M. Crow,et al.  Microarray Analysis of Interferon-regulated Genes in SLE , 2003, Autoimmunity.

[6]  M. Colonna,et al.  Sca‐1 expression defines developmental stages of mouse pDCs that show functional heterogeneity in the endosomal but not lysosomal TLR9 response , 2013, European journal of immunology.

[7]  Mirang Kim,et al.  Inflammation induces two types of inflammatory dendritic cells in inflamed lymph nodes , 2018, Experimental & Molecular Medicine.

[8]  Virginia Pascual,et al.  Interferon and Granulopoiesis Signatures in Systemic Lupus Erythematosus Blood , 2003, The Journal of experimental medicine.

[9]  Li Wu,et al.  Convergent differentiation: myeloid and lymphoid pathways to murine plasmacytoid dendritic cells. , 2013, Blood.

[10]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[11]  M. Tymms,et al.  A null mutation in the gene encoding a type I interferon receptor component eliminates antiproliferative and antiviral responses to interferons alpha and beta and alters macrophage responses. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[12]  W. Shi,et al.  The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote , 2013, Nucleic acids research.

[13]  S. Turley,et al.  Reproducible Isolation of Lymph Node Stromal Cells Reveals Site-Dependent Differences in Fibroblastic Reticular Cells , 2011, Front. Immun..

[14]  A. Luster,et al.  CXCR3 ligands: redundant, collaborative and antagonistic functions , 2011, Immunology and cell biology.

[15]  A. Satterthwaite,et al.  Autoreactive B Cell Responses to RNA-Related Antigens Due to TLR7 Gene Duplication , 2006, Science.

[16]  D. Joshua,et al.  A CD2 high‐expressing stress‐resistant human plasmacytoid dendritic‐cell subset , 2016, Immunology and cell biology.

[17]  A. Schlitzer,et al.  Identification of CCR9- murine plasmacytoid DC precursors with plasticity to differentiate into conventional DCs. , 2011, Blood.

[18]  Gordon K. Smyth,et al.  Testing significance relative to a fold-change threshold is a TREAT , 2009, Bioinform..

[19]  G. Karypis,et al.  Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[20]  V. Soumelis,et al.  Diversification of human plasmacytoid predendritic cells in response to a single stimulus , 2017, Nature Immunology.

[21]  E. Engleman,et al.  Plasmacytoid Dendritic Cell Dichotomy: Identification of IFN-α Producing Cells as a Phenotypically and Functionally Distinct Subset , 2011, The Journal of Immunology.

[22]  Li Wu,et al.  CD4 and CD8 Expression by Dendritic Cell Subtypes in Mouse Thymus and Spleen1 , 2000, The Journal of Immunology.

[23]  J. Villadangos,et al.  Cutting Edge: B220+CCR9− Dendritic Cells Are Not Plasmacytoid Dendritic Cells but Are Precursors of Conventional Dendritic Cells1 , 2009, The Journal of Immunology.

[24]  F. Klauschen,et al.  CD8+ T Cells Orchestrate pDC‐XCR1+ Dendritic Cell Spatial and Functional Cooperativity to Optimize Priming , 2017, Immunity.

[25]  J. Alferink,et al.  Cutting Edge: IFN-β Expression in the Spleen Is Restricted to a Subpopulation of Plasmacytoid Dendritic Cells Exhibiting a Specific Immune Modulatory Transcriptome Signature , 2016, The Journal of Immunology.

[26]  P. Gregersen,et al.  Interferon-regulated chemokines as biomarkers of systemic lupus erythematosus disease activity: a validation study. , 2009, Arthritis and rheumatism.

[27]  A. Luster,et al.  CXCR3 in T cell function. , 2011, Experimental cell research.

[28]  S. Sozzani,et al.  Trafficking properties of plasmacytoid dendritic cells in health and disease. , 2010, Trends in immunology.

[29]  Li Wu,et al.  Nonplasmacytoid, High IFN-α–Producing, Bone Marrow Dendritic Cells , 2012, The Journal of Immunology.

[30]  R. Schreiber,et al.  Blocking monoclonal antibodies specific for mouse IFN-alpha/beta receptor subunit 1 (IFNAR-1) from mice immunized by in vivo hydrodynamic transfection. , 2006, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[31]  M. Colonna,et al.  The multifaceted biology of plasmacytoid dendritic cells , 2015, Nature Reviews Immunology.

[32]  Gordon K Smyth,et al.  Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .

[33]  Meredith O'Keeffe,et al.  Plasmacytoid dendritic cell development. , 2013, Advances in immunology.

[34]  R. Kolbeck,et al.  Plasmacytoid dendritic cells in autoimmunity. , 2017, Current opinion in immunology.

[35]  S. Turley,et al.  Trans-nodal migration of resident dendritic cells into medullary interfollicular regions initiates immunity to influenza vaccine , 2014, The Journal of experimental medicine.

[36]  S. Ikehara,et al.  Plasmacytoid Dendritic Cells of Different Origins Have Distinct Characteristics and Function: Studies of Lymphoid Progenitors versus Myeloid Progenitors , 2005, The Journal of Immunology.

[37]  K. Kedzierska,et al.  Nasal-associated lymphoid tissues (NALTs) support the recall but not priming of influenza virus-specific cytotoxic T cells , 2017, Proceedings of the National Academy of Sciences.

[38]  R. Schreiber,et al.  Blocking monoclonal antibodies specific for mouse IFN-alpha/beta receptor subunit 1 (IFNAR-1) from mice immunized by in vivo hydrodynamic transfection. , 2006, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[39]  Ec Beachler Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus , 2003 .

[40]  Li Wu,et al.  Cutting Edge: Generation of Splenic CD8+ and CD8− Dendritic Cell Equivalents in Fms-Like Tyrosine Kinase 3 Ligand Bone Marrow Cultures1 , 2005, The Journal of Immunology.

[41]  Florent Ginhoux,et al.  Dendritic cells, monocytes and macrophages: a unified nomenclature based on ontogeny , 2014, Nature Reviews Immunology.

[42]  Charity W. Law,et al.  voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.

[43]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[44]  Manfred Lehner,et al.  Transcription Factor E2-2 Is an Essential and Specific Regulator of Plasmacytoid Dendritic Cell Development , 2008, Cell.

[45]  Andreas Radbruch,et al.  IFNα and its response proteins, IP-10 and SIGLEC-1, are biomarkers of disease activity in systemic lupus erythematosus , 2012, Annals of the rheumatic diseases.

[46]  N. McGovern,et al.  Unsupervised High-Dimensional Analysis Aligns Dendritic Cells across Tissues and Species , 2016, Immunity.

[47]  U. V. von Andrian,et al.  CXCR3 chemokine receptor-ligand interactions in the lymph node optimize CD4+ T helper 1 cell differentiation. , 2012, Immunity.

[48]  U. V. von Andrian,et al.  Chemokine Guidance of Central Memory T Cells Is Critical for Antiviral Recall Responses in Lymph Nodes , 2012, Cell.

[49]  S. Nutt,et al.  Transcriptional programming of the dendritic cell network , 2012, Nature Reviews Immunology.

[50]  V. Pascual,et al.  Type I interferon in systemic lupus erythematosus and other autoimmune diseases. , 2006, Immunity.

[51]  B. Reizis,et al.  The role of dendritic cells in autoimmunity , 2013, Nature Reviews Immunology.

[52]  E. Kremmer,et al.  CCR9 is a homing receptor for plasmacytoid dendritic cells to the small intestine , 2007, Proceedings of the National Academy of Sciences.

[53]  Virginia Pascual,et al.  Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients , 2016, Cell.