Appendix a a " Flip-flop " Rotation Stage for Routine Dual-axis Electron Cryotomography

Electron cryotomography can be used to solve the three-dimensional structures of individual large macromolecules, assemblies, and even small intact cells to medium (approximately 4-8 nm) resolution in a near-native state, but restrictions in the range of accessible views are a major limitation. Here we report on the design, characterization, and demonstration of a new "flip-flop" rotation stage that allows facile and routine collection of two orthogonal tilt-series of cryosamples. Single- and dual-axis tomograms of a variety of samples are compared to illustrate qualitatively the improvement produced by inclusion of the second tilt-series. Exact quantitative expressions are derived for the volume of the remaining "missing pyramid" in reciprocal space. When orthogonal tilt-series are recorded to +/-65 degrees in each direction, as this new cryostage permits, only 11% of reciprocal space is left unmeasured. The tomograms suggest that further improvement could be realized, however, through better software to align and merge dual-axis tilt-series of cryosamples.

[1]  W. Baumeister Mapping molecular landscapes inside cells , 2004, Microscopy and Microanalysis.

[2]  G. Jensen,et al.  Observations on the behavior of vitreous ice at ~82 and ~12K , 2006 .

[3]  James Pulokas,et al.  Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1. , 2003, Journal of structural biology.

[4]  Grant J Jensen,et al.  A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography. , 2006, Journal of structural biology.

[5]  J B Heymann,et al.  Bsoft: image and molecular processing in electron microscopy. , 2001, Journal of structural biology.

[6]  A S Frangakis,et al.  Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion. , 2001, Journal of structural biology.

[7]  F. Förster,et al.  Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography , 2004, Science.

[8]  O. L. Krivanek,et al.  Sub-ångstrom resolution using aberration corrected electron optics , 2002, Nature.

[9]  Wolfgang Baumeister,et al.  Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography , 2003, Science.

[10]  J. Frank,et al.  Double-tilt electron tomography. , 1995, Ultramicroscopy.

[11]  M Marko,et al.  The Emergence of Electron Tomography as an Important Tool for Investigating Cellular Ultrastructure , 2001, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[12]  Reiner Hegerl,et al.  Pyrodictium cannulae enter the periplasmic space but do not enter the cytoplasm, as revealed by cryo-electron tomography. , 2003, Journal of structural biology.

[13]  J. Dubochet,et al.  Cryo-electron microscopy of vitrified specimens , 1988, Quarterly Reviews of Biophysics.

[14]  S. Subramaniam,et al.  Three-dimensional electron microscopy at molecular resolution. , 2004, Annual review of biophysics and biomolecular structure.

[15]  Heymann Jb,et al.  Bsoft: Image and Molecular Processing in Electron Microscopy , 2001 .

[16]  J. Frank,et al.  Electron tomographic analysis of frozen-hydrated tissue sections. , 2002, Journal of structural biology.

[17]  Grant J Jensen,et al.  Three-dimensional structure of HIV-1 virus-like particles by electron cryotomography. , 2005, Journal of molecular biology.

[18]  Wolfgang Baumeister,et al.  Cryo-electron tomography of vaccinia virus. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[19]  A. J. Koster,et al.  Electron Tomography: a tool for 3D structural probing of heterogeneous catalysts at the nanometer scale , 2004 .

[20]  Achilleas S. Frangakis,et al.  Cryo-Electron Tomography Reveals the Cytoskeletal Structure of Spiroplasma melliferum , 2005, Science.

[21]  M. Haider,et al.  A spherical aberration-corrected 200 kV TEM. , 2003, Journal of electron microscopy.

[22]  D. Mastronarde Dual-axis tomography: an approach with alignment methods that preserve resolution. , 1997, Journal of structural biology.

[23]  J. Frank Single-particle imaging of macromolecules by cryo-electron microscopy. , 2002, Annual review of biophysics and biomolecular structure.

[24]  H. Aldrich,et al.  Microcompartments in Prokaryotes: Carboxysomes and Related Polyhedra , 2001, Applied and Environmental Microbiology.