Raman microspectroscopy, surface-enhanced Raman scattering microspectroscopy, and stable-isotope Raman microspectroscopy for biofilm characterization
暂无分享,去创建一个
[1] J. Popp,et al. Vibrational spectroscopy—A powerful tool for the rapid identification of microbial cells at the single‐cell level , 2009, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[2] J Popp,et al. Micro-Raman spectroscopic identification of bacterial cells of the genus Staphylococcus and dependence on their cultivation conditions. , 2005, The Analyst.
[3] F. Martin,et al. Interrogating chemical variation via layer-by-layer SERS during biofouling and cleaning of nanofiltration membranes with further investigations into cleaning efficiency. , 2015, Water research.
[4] Bernhard Roth,et al. Confocal Raman microscopy and fluorescent in situ hybridization - A complementary approach for biofilm analysis. , 2016, Chemosphere.
[5] V. Couderc,et al. Hyperspectral coherent Raman imaging – principle, theory, instrumentation, and applications to life sciences , 2016 .
[6] Roberto Kolter,et al. Biofilms: the matrix revisited. , 2005, Trends in microbiology.
[7] P. Taday,et al. Surface-Enhanced Raman Spectroscopy for in Situ Measurements of Signaling Molecules (Autoinducers) Relevant to Bacteria Quorum Sensing , 2007, Applied spectroscopy.
[8] Jürgen Popp,et al. How to pre-process Raman spectra for reliable and stable models? , 2011, Analytica chimica acta.
[9] Charles H. Camp,et al. Chemically sensitive bioimaging with coherent Raman scattering , 2015, Nature Photonics.
[10] R. Niessner,et al. Combined use of confocal laser scanning microscopy (CLSM) and Raman microscopy (RM): investigations on EPS-Matrix. , 2009, Water research.
[11] Mustafa Çulha,et al. Convective assembly of bacteria for surface-enhanced Raman scattering. , 2008, Langmuir : the ACS journal of surfaces and colloids.
[12] Mustafa Culha,et al. Multiplex identification of bacteria in bacterial mixtures with surface-enhanced Raman scattering , 2009 .
[13] Damien J. Batstone,et al. Non-invasive characterization of electrochemically active microbial biofilms using confocal Raman microscopy , 2012 .
[14] J. Lawrence,et al. Application of multiple parameter imaging for the quantification of algal, bacterial and exopolymer components of microbial biofilms , 1998 .
[15] R. Dayal,et al. Detection of algae and bacterial biofilms formed on titanium surfaces using micro-Raman analysis , 2010 .
[16] Michael Wagner,et al. Label-free in situ SERS imaging of biofilms. , 2010, The journal of physical chemistry. B.
[17] J. Ling,et al. Chemical composition of Enterococcus faecalis in biofilm cells initiated from different physiologic states , 2014, Folia Microbiologica.
[18] T. Spiro,et al. Visible and near‐ultraviolet resonance Raman spectra of photolabile vitamin B12 derivatives with a rapid‐flow technique , 1977 .
[19] Thomas Bjarnsholt,et al. Combination of microscopic techniques reveals a comprehensive visual impression of biofilm structure and composition. , 2012, FEMS immunology and medical microbiology.
[20] Shinsuke Shigeto,et al. Leucine pools in Escherichia coli biofilm discovered by Raman imaging , 2011 .
[21] J. Lawrence,et al. In Situ Characterization of Extracellular Polymeric Substances (EPS) in Biofilm Systems , 1999 .
[22] J. Popp,et al. Time fluctuations and imaging in the SERS spectra of fungal hypha grown on nanostructured substrates. , 2007, The journal of physical chemistry. B.
[23] G. Sharma,et al. COMBINED USE OF FOURIER TRANSFORM INFRARED AND RAMAN SPECTROSCOPY TO STUDY PLANKTONIC AND BIOFILM CELLS OF CRONOBACTER SAKAZAKII , 2014 .
[24] Reinhard Niessner,et al. SERS detection of bacteria in water by in situ coating with Ag nanoparticles. , 2014, Analytical chemistry.
[25] S. Schlücker. Surface-enhanced Raman spectroscopy: concepts and chemical applications. , 2014, Angewandte Chemie.
[26] Michael Wagner,et al. Single cell stable isotope probing in microbiology using Raman microspectroscopy. , 2016, Current opinion in biotechnology.
[27] R. Niessner,et al. Synthesis of core-shell surface-enhanced Raman tags for bioimaging. , 2010, Analytical chemistry.
[28] Duncan Graham,et al. Molecularly-mediated assemblies of plasmonic nanoparticles for Surface-Enhanced Raman Spectroscopy applications. , 2012, Chemical Society reviews.
[29] Jürgen Popp,et al. A comprehensive study of classification methods for medical diagnosis , 2009 .
[30] D. Samuelson,et al. Antimicrobial effect of diallyl sulphide on Campylobacter jejuni biofilms. , 2012, Journal of Antimicrobial Chemotherapy.
[31] Reinhard Niessner,et al. Optimized Surface-enhanced Raman Scattering (SERS) Colloids for the Characterization of Microorganisms , 2010, Analytical sciences : the international journal of the Japan Society for Analytical Chemistry.
[32] M. Seibert,et al. Surface-enhanced resonance Raman scattering spectroscopy of bacterial photosynthetic membranes. The carotenoid of Rhodospirillum rubrum. , 1988, The Journal of biological chemistry.
[33] Duber M. Murillo,et al. Spatiotemporal distribution of different extracellular polymeric substances and filamentation mediate Xylella fastidiosa adhesion and biofilm formation , 2015, Scientific Reports.
[34] L. Liz‐Marzán,et al. Detection and imaging of quorum sensing in Pseudomonas aeruginosa biofilm communities by surface-enhanced resonance Raman scattering , 2016, Nature materials.
[35] T. Smith-Palmer,et al. Confocal Raman microspectroscopy as a tool for studying the chemical heterogeneities of biofilms in situ , 2007, Journal of applied microbiology.
[36] K. Schuster,et al. Single-cell analysis of bacteria by Raman microscopy: spectral information on the chemical composition of cells and on the heterogeneity in a culture. , 2000, Journal of microbiological methods.
[37] R. Goodacre,et al. Discrimination of bacteria using surface-enhanced Raman spectroscopy. , 2004, Analytical chemistry.
[38] Satoshi Kawata,et al. Raman and SERS microscopy for molecular imaging of live cells , 2013, Nature Protocols.
[39] Michael Schmitt,et al. Chemotaxonomic Identification of Single Bacteria by Micro-Raman Spectroscopy: Application to Clean-Room-Relevant Biological Contaminations , 2005, Applied and Environmental Microbiology.
[40] R. Niessner,et al. Towards a nondestructive chemical characterization of biofilm matrix by Raman microscopy , 2009, Analytical and bioanalytical chemistry.
[41] J. Costerton,et al. Antibiotic resistance of bacteria in biofilms , 2001, The Lancet.
[42] M. Doble,et al. Functionalized polycaprolactam as an active food package for antibiofilm activity and extended shelf life. , 2014, Colloids and surfaces. B, Biointerfaces.
[43] Sarah M. Strycharz-Glaven,et al. Spatially resolved confocal resonant Raman microscopic analysis of anode-grown Geobacter sulfurreducens biofilms. , 2014, Chemphyschem : a European journal of chemical physics and physical chemistry.
[44] D. Naumann,et al. Prospective Study of the Performance of Vibrational Spectroscopies for Rapid Identification of Bacterial and Fungal Pathogens Recovered from Blood Cultures , 2003, Journal of Clinical Microbiology.
[45] D. Batstone,et al. Real-Time Measurements of the Redox States of c-Type Cytochromes in Electroactive Biofilms: A Confocal Resonance Raman Microscopy Study , 2014, PloS one.
[46] Royston Goodacre,et al. Characterisation and identification of bacteria using SERS. , 2008, Chemical Society reviews.
[47] R. Niessner,et al. A photoacoustic technique for depth-resolved in situ monitoring of biofilms. , 2002, Environmental science & technology.
[48] Mustafa Culha,et al. Layer-by-layer coating of bacteria with noble metal nanoparticles for surface-enhanced Raman scattering , 2009, Analytical and bioanalytical chemistry.
[49] F. Yildiz,et al. Characterization of the Vibrio cholerae extracellular matrix: a top-down solid-state NMR approach. , 2015, Biochimica et biophysica acta.
[50] Vladislav V. Yakovlev,et al. Comparison of coherent and spontaneous Raman microspectroscopies for noninvasive detection of single bacterial endospores , 2007, Proceedings of the National Academy of Sciences.
[51] P. Suci,et al. Integration of Raman microscopy, differential interference contrast microscopy, and attenuated total reflection Fourier transform infrared spectroscopy to investigate chlorhexidine spatial and temporal distribution in Candida albicans biofilms. , 2001, Journal of microbiological methods.
[52] R. Zenobi,et al. Towards chemical analysis of nanostructures in biofilms II: tip-enhanced Raman spectroscopy of alginates , 2008, Analytical and bioanalytical chemistry.
[53] Burt V. Bronk,et al. Silver metal induced surface enhanced Raman of bacteria , 2002 .
[54] R. Niessner,et al. In situ surface-enhanced Raman scattering analysis of biofilm. , 2008, Analytical chemistry.
[55] H. Bruining,et al. Rapid Identification of Candida Species by Confocal Raman Microspectroscopy , 2002, Journal of Clinical Microbiology.
[56] J. Lloyd,et al. Surface-enhanced Raman scattering from intracellular and extracellular bacterial locations. , 2008, Analytical chemistry.
[57] R. Copeland,et al. Ultraviolet resonance Raman spectroscopy of flavin mononucleotide and flavin adenine dinucleotide , 1986 .
[58] Akos Vertes,et al. Analytical challenges of microbial biofilms on medical devices. , 2012, Analytical chemistry.
[59] A. Ngezahayo,et al. In situ mapping of nitrifiers and anammox bacteria in microbial aggregates by means of confocal resonance Raman microscopy. , 2008, Journal of microbiological methods.
[60] R. Pätzold,et al. A new approach to non-destructive analysis of biofilms by confocal Raman microscopy , 2006, Analytical and bioanalytical chemistry.
[61] A. Otto. On the significance of Shalaev's ‘hot spots’ in ensemble and single‐molecule SERS by adsorbates on metallic films at the percolation threshold , 2006 .
[62] S. Bell,et al. Quantitative SERS Methods , 2010 .
[63] Royston Goodacre,et al. Raman activated cell ejection for isolation of single cells. , 2013, Analytical chemistry.
[64] J. Popp,et al. Fast label-free detection of Legionella spp. in biofilms by applying immunomagnetic beads and Raman spectroscopy. , 2016, Systematic and applied microbiology.
[65] Jürgen Popp,et al. Isolation and identification of bacteria by means of Raman spectroscopy. , 2015, Advanced drug delivery reviews.
[66] R. Niessner,et al. Exploring the Potential of Stable Isotope (Resonance) Raman Microspectroscopy and Surface-Enhanced Raman Scattering for the Analysis of Microorganisms at Single Cell Level. , 2015, Analytical chemistry.
[67] Uwe Schröder,et al. In situ spectroelectrochemical investigation of electrocatalytic microbial biofilms by surface-enhanced resonance Raman spectroscopy. , 2011, Angewandte Chemie.
[68] J. Popp,et al. Raman spectroscopic differentiation of planktonic bacteria and biofilms , 2015, Analytical and Bioanalytical Chemistry.
[69] D. W. O. HEDDLE,et al. Raman Spectroscopy , 1967, Nature.
[70] Petr Klapetek,et al. State of the art Raman techniques for biological applications. , 2014, Methods.
[71] M. E. Demont,et al. In Situ Confocal Raman Microscopy of Hydrated Early Stages of Bacterial Biofilm Formation on Various Surfaces in a Flow Cell , 2016, Applied spectroscopy.
[72] H. Flemming,et al. Biofouling in water systems – cases, causes and countermeasures , 2002, Applied Microbiology and Biotechnology.
[73] M. Wagner. Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging. , 2009, Annual review of microbiology.
[74] M. Klempner,et al. Characterization of the surface enhanced raman scattering (SERS) of bacteria. , 2005, The journal of physical chemistry. B.
[75] Andrew J Berger,et al. Method for automated background subtraction from Raman spectra containing known contaminants. , 2009, The Analyst.
[76] T. Thurnheer,et al. Multiplex FISH analysis of a six-species bacterial biofilm. , 2004, Journal of microbiological methods.
[77] Raman microspectroscopy for species identification and mapping within bacterial biofilms , 2012, AMB Express.
[78] A. Whiteley,et al. Raman tweezers sorting of single microbial cells. , 2009, Environmental microbiology reports.
[79] Quantification of water and biomass in small colony variant PAO1 biofilms by confocal Raman microspectroscopy , 2009, Applied Microbiology and Biotechnology.
[80] A. Sauer-Budge,et al. The biochemical origins of the surface-enhanced Raman spectra of bacteria: a metabolomics profiling by SERS , 2016, Analytical and Bioanalytical Chemistry.
[81] M. Çulha,et al. Raman and Surface-Enhanced Raman Scattering for Biofilm Characterization , 2018 .
[82] J. Sweedler,et al. Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal Raman microscopy. , 2014, The Analyst.
[83] Srinjan Basu,et al. Label-free live-cell imaging of nucleic acids using stimulated Raman scattering microscopy. , 2012, Chemphyschem : a European journal of chemical physics and physical chemistry.
[84] Mustafa Culha,et al. Reproducible Surface-Enhanced Raman Scattering Spectra of Bacteria on Aggregated Silver Nanoparticles , 2007, Applied spectroscopy.
[85] Xiaonan Lu,et al. An in situ Raman spectroscopy-based microfluidic "lab-on-a-chip" platform for non-destructive and continuous characterization of Pseudomonas aeruginosa biofilms. , 2015, Chemical communications.
[86] Wei Min,et al. Vibrational imaging of newly synthesized proteins in live cells by stimulated Raman scattering microscopy , 2013, Proceedings of the National Academy of Sciences.
[87] S. Efrima,et al. Surface-enhanced Raman spectroscopy of bacteria: the effect of excitation wavelength and chemical modification of the colloidal milieu , 2005 .
[88] S. Banwart,et al. Biofilm formation in environmental bacteria is influenced by different macromolecules depending on genus and species. , 2010, Environmental microbiology.
[89] Paul Stoodley,et al. Bacterial biofilms: from the Natural environment to infectious diseases , 2004, Nature Reviews Microbiology.
[90] Jürgen Popp,et al. On the way to nanometer-sized information of the bacterial surface by tip-enhanced Raman spectroscopy. , 2006, Chemphyschem : a European journal of chemical physics and physical chemistry.
[91] Jürgen Popp,et al. Towards a detailed understanding of bacterial metabolism--spectroscopic characterization of Staphylococcus epidermidis. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.
[92] Sage J. B. Dunham,et al. Correlated Imaging with C60-SIMS and Confocal Raman Microscopy: Visualization of Cell-Scale Molecular Distributions in Bacterial Biofilms , 2014, Analytical chemistry.
[93] Michael Wagner,et al. Who eats what, where and when? Isotope-labelling experiments are coming of age , 2007, The ISME Journal.
[94] Michael Wagner,et al. Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function. , 2007, Environmental microbiology.
[95] Tong Zhang,et al. Surface-enhanced Raman scattering (SERS) revealing chemical variation during biofilm formation: from initial attachment to mature biofilm , 2012, Analytical and Bioanalytical Chemistry.
[96] M. Çulha,et al. In Situ-Monitoring of Biofilm Formation by Using Surface-Enhanced Raman Scattering , 2013, Applied spectroscopy.
[97] R. Niessner,et al. The origin of the band at around 730 cm(-1) in the SERS spectra of bacteria: a stable isotope approach. , 2016, The Analyst.
[98] R. Goodacre,et al. Reverse and Multiple Stable Isotope Probing to Study Bacterial Metabolism and Interactions at the Single Cell Level. , 2016, Analytical chemistry.
[99] S. Lackner,et al. Investigating biofilm structure developing on carriers from lab-scale moving bed biofilm reactors based on light microscopy and optical coherence tomography. , 2016, Bioresource technology.
[100] T. Spiro,et al. RESONANCE RAMAN SPECTRA OF HEME PROTEINS, EFFECTS OF OXIDATION AND SPIN STATE , 1974 .
[101] T. Schwartz,et al. Combined use of molecular biology taxonomy, Raman spectrometry, and ESEM imaging to study natural biofilms grown on filter materials at waterworks. , 2009, Chemosphere.
[102] P. Dorrestein,et al. Imaging mass spectrometry in microbiology , 2011, Nature Reviews Microbiology.
[103] J. Costerton,et al. Bacterial biofilms: a common cause of persistent infections. , 1999, Science.
[104] A. Spiers,et al. Pseudomonas fluorescens SBW25 Biofilm and Planktonic Cells Have Differentiable Raman Spectral Profiles , 2007, Microbial Ecology.
[105] D. Naumann,et al. Identification of medically relevant microorganisms by vibrational spectroscopy. , 2002, Journal of microbiological methods.
[106] G. Jung,et al. Evaluation of antibiotic effects on Pseudomonas aeruginosa biofilm using Raman spectroscopy and multivariate analysis. , 2014, Biomedical optics express.
[107] W. R. Premasiri,et al. SERS Analysis of Bacteria, Human Blood, and Cancer Cells: a Metabolomic and Diagnostic Tool , 2014 .
[108] Mark J. Bailey,et al. Single-Cell Raman Spectral Profiles of Pseudomonas fluorescens SBW25 Reflects in vitro and in planta Metabolic History , 2007, Microbial Ecology.
[109] J. Popp,et al. Classification and identification of pigmented cocci bacteria relevant to the soil environment via Raman spectroscopy , 2015, Environmental Science and Pollution Research.
[110] N. High,et al. Bacterial coaggregation: an integral process in the development of multi-species biofilms. , 2003, Trends in microbiology.
[111] Pengyu Chen,et al. Surface-enhanced Raman spectroscopy monitoring the development of dual-species biofouling on membrane surfaces , 2015 .
[112] T. Smith-Palmer,et al. A Confocal Raman Microscopy Study of the Distribution of a Carotene-Containing Yeast in a Living Pseudomonas Aeruginosa Biofilm , 2008, Applied spectroscopy.
[113] Mustafa Culha,et al. On Sample Preparation for Surface-Enhanced Raman Scattering (SERS) of Bacteria and the Source of Spectral Features of the Spectra , 2011, Applied spectroscopy.
[114] C. Wright,et al. Application of AFM from microbial cell to biofilm. , 2010, Scanning.
[115] R. Goodacre,et al. Shining light on the microbial world the application of Raman microspectroscopy. , 2010, Advances in applied microbiology.
[116] Yinxin Zhang,et al. In situ Detection of a Single Bacterium in Complex Environment by Hyperspectral CARS Imaging , 2016 .
[117] R A Mathies,et al. Assignment of fingerprint vibrations in the resonance Raman spectra of rhodopsin, isorhodopsin, and bathorhodopsin: implications for chromophore structure and environment. , 1987, Biochemistry.
[118] M. Lafleur,et al. Characterization of the Diffusion of Polyethylene Glycol in Streptococcus Mutans Biofilms by Raman Microspectroscopy , 2004, Applied spectroscopy.
[119] D. Naumann,et al. Investigating Microbial (Micro)colony Heterogeneity by Vibrational Spectroscopy , 2001, Applied and Environmental Microbiology.
[120] C. Hunter,et al. Rapid resonance Raman microspectroscopy to probe carbon dioxide fixation by single cells in microbial communities , 2011, The ISME Journal.
[121] P. Etchegoin,et al. Basic Electromagnetic Theory of SERS , 2010 .
[122] M. Wagner,et al. Raman microspectroscopy reveals long‐term extracellular activity of chlamydiae , 2010, Molecular microbiology.
[123] Jürgen Popp,et al. Raman spectroscopic identification of single bacterial cells under antibiotic influence , 2014, Analytical and Bioanalytical Chemistry.
[124] Jürgen Popp,et al. The many facets of Raman spectroscopy for biomedical analysis , 2014, Analytical and Bioanalytical Chemistry.
[125] Ian P Thompson,et al. Raman microscopic analysis of single microbial cells. , 2004, Analytical chemistry.
[126] K. Dholakia,et al. Raman-activated cell counting for profiling carbon dioxide fixing microorganisms. , 2012, The journal of physical chemistry. A.
[127] Ota Samek,et al. The potential of Raman spectroscopy for the identification of biofilm formation by Staphylococcus epidermidis , 2010 .
[128] M. Parsek,et al. The promise and peril of transcriptional profiling in biofilm communities. , 2007, Current opinion in microbiology.
[129] Hemanth Noothalapati,et al. Exploring metabolic pathways in vivo by a combined approach of mixed stable isotope-labeled Raman microspectroscopy and multivariate curve resolution analysis. , 2014, Analytical chemistry.
[130] F. Fang,et al. Functional groups characteristics of EPS in biofilm growing on different carriers. , 2013, Chemosphere.
[131] Royston Goodacre,et al. Combining Raman and FT-IR spectroscopy with quantitative isotopic labeling for differentiation of E. coli cells at community and single cell levels. , 2015, Analytical chemistry.
[132] A. Schintlmeister,et al. Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells , 2014, Proceedings of the National Academy of Sciences.
[133] P G Etchegoin,et al. A perspective on single molecule SERS: current status and future challenges. , 2008, Physical chemistry chemical physics : PCCP.
[134] Jürgen Popp,et al. The application of Raman spectroscopy for the detection and identification of microorganisms , 2016 .
[135] R. Niessner,et al. Visualisation of transient processes in biofilms by optical coherence tomography. , 2007, Water research.
[136] J. Popp,et al. Raman spectroscopic monitoring of the growth of pigmented and non-pigmented mycobacteria , 2015, Analytical and Bioanalytical Chemistry.
[137] M. Lutz. Resonance Raman spectra of chlorophyll in solution , 1974 .
[138] R. Niessner,et al. Raman microscopy and surface‐enhanced Raman scattering (SERS) for in situ analysis of biofilms , 2010, Journal of biophotonics.
[139] B. V. Bronk,et al. Silver Colloids Impregnating or Coating Bacteria , 1998 .
[140] Merve Meinhardt-Wollweber,et al. Of microparticles and bacteria identification--(resonance) Raman micro-spectroscopy as a tool for biofilm analysis. , 2011, Water research.
[141] Yunjie Shi,et al. Real-time Raman based approach for identification of biofouling , 2016 .
[142] S. Efrima,et al. Understanding SERS of bacteria , 2009 .
[143] Yuriy Rebets,et al. SimReg1 is a master switch for biosynthesis and export of simocyclinone D8 and its precursors , 2012, AMB Express.
[144] A. Schintlmeister,et al. Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils , 2015, FEMS microbiology ecology.
[145] J. Popp,et al. Bioanalytical application of surface‐ and tip‐enhanced Raman spectroscopy , 2012 .
[146] Eric C Le Ru,et al. Single-molecule surface-enhanced Raman spectroscopy. , 2012, Annual review of physical chemistry.