MHC class I of saltwater crocodiles (Crocodylus porosus): polymorphism and balancing selection

[1]  Kate Robson,et al.  Mitochondrial DNA analyses of the saltwater crocodile (Crocodylus porosus) from the Northern Territory of Australia , 2012, Australian Journal of Zoology.

[2]  C. Eizaguirre,et al.  Rapid and adaptive evolution of MHC genes under parasite selection in experimental vertebrate populations , 2012, Nature Communications.

[3]  H. Mitani,et al.  Retained orthologous relationships of the MHC Class I genes during euteleost evolution. , 2011, Molecular biology and evolution.

[4]  M. Strandh,et al.  Characterization of MHC class I and II genes in a subantarctic seabird, the blue petrel, Halobaena caerulea (Procellariiformes) , 2011, Immunogenetics.

[5]  J. Komdeur,et al.  Characterization of MHC-I in the blue tit (Cyanistes caeruleus) reveals low levels of genetic diversity and trans-population evolution across European populations , 2011, Immunogenetics.

[6]  Bettina Wachter,et al.  Cheetah Paradigm Revisited: MHC Diversity in the World's Largest Free-Ranging Population , 2010, Molecular biology and evolution.

[7]  D. Penn,et al.  Female house sparrows "count on" male genes: experimental evidence for MHC-dependent mate preference in birds , 2011, BMC Evolutionary Biology.

[8]  F. Allendorf,et al.  Genetic diversity and differentiation at MHC genes in island populations of tuatara (Sphenodon spp.) , 2010, Molecular ecology.

[9]  Hongxuan He,et al.  MHC class I loci of the Bar-Headed goose (Anser indicus) , 2010, Genetics and molecular biology.

[10]  L. Bachmann,et al.  Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes , 2010, Journal of evolutionary biology.

[11]  L. Excoffier,et al.  Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows , 2010, Molecular ecology resources.

[12]  Jacek Radwan,et al.  Effects of an MHC‐DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus , 2010, Molecular ecology.

[13]  Jerzy K. Kulski,et al.  MHC class I A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque , 2009, Immunogenetics.

[14]  R. Fernando,et al.  Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations , 2009, BMC Genomics.

[15]  Pablo Librado,et al.  DnaSP v5: a software for comprehensive analysis of DNA polymorphism data , 2009, Bioinform..

[16]  T. Albrecht,et al.  Extremely high MHC class I variation in a population of a long-distance migrant, the Scarlet Rosefinch (Carpodacus erythrinus) , 2009, Immunogenetics.

[17]  R. Julliard,et al.  Diversifying selection on MHC class I in the house sparrow (Passer domesticus) , 2009, Molecular ecology.

[18]  G. Leach,et al.  Management program for the saltwater crocodile : in the Northern Territory of Australia, 2009–2014 , 2009 .

[19]  S. Edwards,et al.  MHC class I genes of birds of prey: isolation, polymorphism and diversifying selection , 2009, Conservation Genetics.

[20]  Hans H. Cheng,et al.  Mapping QTL affecting resistance to Marek's disease in an F6 advanced intercross population of commercial layer chickens , 2009, BMC Genomics.

[21]  Juha Merilä,et al.  A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution , 2009, BMC Genomics.

[22]  C. Daugherty,et al.  Reduced MHC variation in a threatened tuatara species , 2008 .

[23]  A. Caccone,et al.  Species-specific evolution of class I MHC genes in iguanas (Order: Squamata; Subfamily: Iguaninae) , 2008, Immunogenetics.

[24]  G. Grigg,et al.  Home range and movements of radio-tracked estuarine crocodiles (Crocodylus porosus) within a non-tidal waterhole , 2008 .

[25]  J. Kaufman,et al.  Single locus typing of MHC class I and class II B loci in a population of red jungle fowl , 2008, Immunogenetics.

[26]  U. Grimholt,et al.  The Effect of Specific MHC Class I and Class II Combinations on Resistance to Furunculosis in Atlantic Salmon (Salmo salar) , 2008, Scandinavian journal of immunology.

[27]  A. Rambaut,et al.  BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.

[28]  C. Daugherty,et al.  Two patterns of variation among MHC class I loci in Tuatara (Sphenodon punctatus). , 2007, The Journal of heredity.

[29]  Gordon C. Grigg,et al.  Satellite Tracking Reveals Long Distance Coastal Travel and Homing by Translocated Estuarine Crocodiles, Crocodylus porosus , 2007, PloS one.

[30]  E. Petersson,et al.  Influence of genetic dissimilarity in the reproductive success and mate choice of brown trout – females fishing for optimal MHC dissimilarity , 2007, Journal of evolutionary biology.

[31]  M. Nei,et al.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.

[32]  J. Höglund,et al.  Spatial pattern of MHC class II variation in the great snipe (Gallinago media) , 2007, Molecular ecology.

[33]  A. Caccone,et al.  Molecular assessment of the genetic integrity, distinctiveness and phylogeographic context of the Saltwater crocodile (Crocodylus porosus) on Palau , 2007, Conservation Genetics.

[34]  A. Cunningham,et al.  Is MHC enough for understanding wildlife immunogenetics? , 2006, Trends in ecology & evolution.

[35]  K. Belov,et al.  Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. MHC Class I genes in the Tuatara (Sphenodon spp.): evolution of the MHC in an ancient reptilian order. , 2006, Molecular biology and evolution.

[36]  Daniel J. Wilson,et al.  Estimating Diversifying Selection and Functional Constraint in the Presence of Recombination , 2006, Genetics.

[37]  D. Huson,et al.  Application of phylogenetic networks in evolutionary studies. , 2006, Molecular biology and evolution.

[38]  S. Piertney,et al.  The evolutionary ecology of the major histocompatibility complex , 2006, Heredity.

[39]  Thomas J Naughton,et al.  Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified , 2006, BMC Evolutionary Biology.

[40]  S. Sommer.  The importance of immune gene variability (MHC) in evolutionary ecology and conservation , 2005, Frontiers in Zoology.

[41]  David Posada,et al.  RDP2: recombination detection and analysis from sequence alignments , 2005, Bioinform..

[42]  W. R. Kay.  Movements and home ranges of radio-tracked Crocodylus porosus in the Cambridge Gulf region of Western Australia , 2004 .

[43]  S. Isberg,et al.  Analysis of microsatellites and parentage testing in saltwater crocodiles. , 2004, The Journal of heredity.

[44]  S. Bensch,et al.  MHC class I typing in a songbird with numerous loci and high polymorphism using motif-specific PCR and DGGE , 2004, Heredity.

[45]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[46]  G. Sorci,et al.  Diversity of Mhc class I and IIB genes in house sparrows (Passer domesticus) , 2004, Immunogenetics.

[47]  S. Ewald,et al.  Diversity and locus specificity of chicken MHC B class I sequences. , 2004, Animal genetics.

[48]  Peter Parham,et al.  Nomenclature for the major histocompatibility complexes of different species: a proposal , 2004, Immunogenetics.

[49]  D. Richardson,et al.  MHC diversity in two Acrocephalus species: the outbred Great reed warbler and the inbred Seychelles warbler , 2003, Molecular ecology.

[50]  Unni Grimholt,et al.  MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci , 2003, Immunogenetics.

[51]  M. Milinski,et al.  Female sticklebacks Gasterosteus aculeatus use self-reference to optimize MHC allele number during mate selection , 2003, Behavioral Ecology and Sociobiology.

[52]  M. Nei,et al.  Birth-and-death evolution in primate MHC class I genes: divergence time estimates. , 2003, Molecular biology and evolution.

[53]  K. M. Wegner,et al.  Multiple parasites are driving major histocompatibility complex polymorphism in the wild , 2003, Journal of evolutionary biology.

[54]  J. Gratten.  The molecular systematics, phylogeography and population genetics of Indo-Pacific Crocodylus , 2003 .

[55]  M. Bouvier.  Accessory proteins and the assembly of human class I MHC molecules: a molecular and structural perspective. , 2003, Molecular immunology.

[56]  Jerzy K. Kulski,et al.  SNP profile within the human major histocompatibility complex reveals an extreme and interrupted level of nucleotide diversity. , 2000, Genome research.

[57]  M. Nei,et al.  Origins and divergence times of mammalian class II MHC gene clusters. , 2000, The Journal of heredity.

[58]  Jim Hu,et al.  A dictionary of genetics , 2000, In Vitro Cellular & Developmental Biology - Animal.

[59]  J. C. Howard,et al.  The gene conversion hypothesis of MHC evolution: a review , 1999, Immunogenetics.

[60]  P. Morris,et al.  Phlebotomy Techniques in Crocodilians , 1999 .

[61]  W. Potts,et al.  Dynamics of Mhc evolution in birds and crocodilians: amplification of class II genes with degenerate primers , 1995, Molecular ecology.

[62]  J. Kaufman,et al.  Evolutionary conservation of MHC class I and class II molecules--different yet the same. , 1994, Seminars in immunology.

[63]  L. Melville,et al.  Disease-husbandry associations in farmed crocodiles in Queensland and the Northern Territory. , 1994, Australian veterinary journal.

[64]  D. Kwiatkowski,et al.  Maintenance of MHC polymorphism , 1992, Nature.

[65]  J. Klein,et al.  Molecular Evolution of the Major Histocompatibility Complex , 2011, NATO ASI Series.

[66]  D. Wiley,et al.  Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution. , 1991, Journal of molecular biology.

[67]  A. Hill.  HLA Associations with Malaria in Africa: Some Implications for MHC Evolution , 1991 .

[68]  F. Mazzotti,et al.  Wildlife management : crocodiles and alligators , 1989 .

[69]  J. Klein.  Origin of major histocompatibility complex polymorphism: the trans-species hypothesis. , 1987, Human immunology.

[70]  W. Briles,et al.  Marek's disease: effects of B histocompatibility alloalleles in resistant and susceptible chicken lines. , 1977, Science.