Macronuclear genome structure of the ciliate Nyctotherus ovalis: Single-gene chromosomes and tiny introns
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M. Huynen | L. Landweber | J. Hackstein | B. Dutilh | S. M. D. Staay | A. V. van Hoek | Rob M de Graaf | T. V. van Alen | B. Boxma | G. V. D. Staay | G. Ricard | Wei-Jen Chang | I. Duarte | G. V. D. van der Staay | S. Y. Moon-van der Staay | Rob M. de Graaf | T. Alen | R. M. D. Graaf | Isabel Duarte | Angela H. A. M. van Hoek
[1] Philippe Dessen,et al. Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline. , 2008, Genome research.
[2] O. Jaillon,et al. Translational control of intron splicing in eukaryotes , 2008, Nature.
[3] Laura F. Landweber,et al. RNA-mediated epigenetic programming of a genome-rearrangement pathway , 2008, Nature.
[4] C. Ackerley,et al. Altered distribution of heat shock protein 60 (Hsp60) with dysregulated expression of DHX32. , 2007, Experimental and molecular pathology.
[5] L. Katz,et al. Variation in Macronuclear Genome Content of Three Ciliates with Extensive Chromosomal Fragmentation: A Preliminary Analysis , 2007, The Journal of eukaryotic microbiology.
[6] M. Touchon,et al. Similar compositional biases are caused by very different mutational effects. , 2006, Genome research.
[7] R. Guigó,et al. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia , 2006, Nature.
[8] William H. Majoros,et al. Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote , 2006, PLoS biology.
[9] Wilfred W. Li,et al. MEME: discovering and analyzing DNA and protein sequence motifs , 2006, Nucleic Acids Res..
[10] M. Huynen,et al. Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment , 2006, BMC Genomics.
[11] Mihaela Zavolan,et al. Identification of Clustered Micrornas Using an Ab Initio Prediction Method , 2022 .
[12] E. Villalobo,et al. Gene structure of the ciliate Sterkiella histriomuscorum based on a combined analysis of DNA and cDNA sequences from 21 macronuclear chromosomes , 2005, Chromosoma.
[13] Olivier Gascuel,et al. PHYML Online: A Web Server for Fast Maximum Likelihood-Based Phylogenetic Inference , 2018 .
[14] M. Huynen,et al. An anaerobic mitochondrion that produces hydrogen , 2005, Nature.
[15] J. Hackstein,et al. The 3' Untranslated Region of mRNAs from the Ciliate Nyctotherus ovalis , 2005 .
[16] Andre R. O. Cavalcanti,et al. Decoding the Decoding Region: Analysis of Eukaryotic Release Factor (eRF1) Stop Codon-Binding Residues , 2005, Journal of Molecular Evolution.
[17] Ewan Birney,et al. Automated generation of heuristics for biological sequence comparison , 2005, BMC Bioinformatics.
[18] Andre R. O. Cavalcanti,et al. Sequence features of Oxytricha trifallax (class Spirotrichea) macronuclear telomeric and subtelomeric sequences. , 2004, Protist.
[19] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[20] P. Wincker,et al. High Coding Density on the Largest Paramecium tetraurelia Somatic Chromosome , 2004, Current Biology.
[21] Lorenzo Orecchia,et al. Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project , 2004, Chromosoma.
[22] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[23] L. Landweber,et al. A micronuclear locus containing three protein-coding genes remains linked during macronuclear development in the spirotrichous ciliate Holosticha. , 2004, Protist.
[24] M. Bétermier,et al. Large-scale genome remodelling by the developmentally programmed elimination of germ line sequences in the ciliate Paramecium. , 2004, Research in microbiology.
[25] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[26] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[27] Matthias Görlach,et al. DNA-dependent protein kinase (DNA-PK) phosphorylates nuclear DNA helicase II/RNA helicase A and hnRNP proteins in an RNA-dependent manner. , 2004, Nucleic acids research.
[28] E. Helftenbein,et al. Both α-tubulin genes are transcriptionally active in Stylonchyia lemnae , 1988, Current Genetics.
[29] D. Prescott,et al. DNA of ciliated protozoa , 1971, Chromosoma.
[30] Andre R. O. Cavalcanti,et al. Sequencing the Oxytricha trifallax macronuclear genome: a pilot project. , 2003, Trends in genetics : TIG.
[31] D. W. Kim,et al. Involvement of DNA-dependent protein kinase in regulation of the mitochondrial heat shock proteins. , 2003, Leukemia research.
[32] Pierre Baldi,et al. Why are complementary DNA strands symmetric? , 2002, Bioinform..
[33] P. Dessen,et al. Random Sequencing of Paramecium Somatic DNA , 2002, Eukaryotic Cell.
[34] E. Villalobo,et al. Different stop codon usage in two pseudohypotrich ciliates. , 2001, FEMS microbiology letters.
[35] K. Birmingham. Sir Paul Nurse , 2001, Nature Medicine.
[36] I. Skovorodkin,et al. Minichromosomal DNA replication in the macronucleus of the hypotrichous ciliate Stylonychia lemnae is independent of chromosome-internal sequences , 2001, Chromosoma.
[37] L. Katz,et al. Widespread distribution of extensive chromosomal fragmentation in ciliates. , 2001, Molecular biology and evolution.
[38] Laura F. Landweber,et al. The molecular basis of nuclear genetic code change in ciliates , 2001, Current Biology.
[39] David M. Prescott,et al. Genome gymnastics: unique modes of dna evolution and processing in ciliates , 2000, Nature Reviews Genetics.
[40] L F Landweber,et al. Evolution and assembly of an extremely scrambled gene. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[41] Xin Chen,et al. TRANSFAC: an integrated system for gene expression regulation , 2000, Nucleic Acids Res..
[42] J. Hackstein,et al. Voltage‐Dependent Reversal of Anodic Galvanotaxis in Nyctotherus ovalis , 1999, The Journal of eukaryotic microbiology.
[43] D. Prescott. Evolution of DNA Organization in Hypotrichous Ciliates a , 1999, Annals of the New York Academy of Sciences.
[44] D. Forsdyke,et al. Deviations from Chargaff's second parity rule correlate with direction of transcription. , 1999, Journal of theoretical biology.
[45] J. Hackstein,et al. A hydrogenosome with a genome , 1998, Nature.
[46] G. Church,et al. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation , 1998, Nature Biotechnology.
[47] J. Collado-Vides,et al. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. , 1998, Journal of molecular biology.
[48] M. Tan,et al. The two gamma-tubulin-encoding genes of the ciliate Euplotes crassus differ in their sequences, codon usage, transcription initiation sites and poly(A) addition sites. , 1998, Gene.
[49] Michael Gribskov,et al. Combining evidence using p-values: application to sequence homology searches , 1998, Bioinform..
[50] D. Prescott,et al. Origin, evolution, and excision of internal elimination segments in germline genes of ciliates. , 1997, Current opinion in genetics & development.
[51] D. Prescott,et al. Phylogenetic Relationships Among Hypotrichous Ciliates Determined with the Macronuclear Gene Encoding the Large, Catalytic Subunit of DNA Polymerase α , 1997, Journal of Molecular Evolution.
[52] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[53] E. Wahle,et al. The mechanism of 3' cleavage and polyadenylation of eukaryotic pre-mRNA. , 1997, Progress in nucleic acid research and molecular biology.
[54] D. Prescott,et al. Phylogenetic relationships among hypotrichous ciliates determined with the macronuclear gene encoding the large, catalytic subunit of DNA polymerase alpha. , 1997, Journal of molecular evolution.
[55] Manolo Gouy,et al. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny , 1996, Comput. Appl. Biosci..
[56] G. McFadden,et al. The miniaturized nuclear genome of eukaryotic endosymbiont contains genes that overlap, genes that are cotranscribed, and the smallest known spliceosomal introns. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[57] M. Yao,et al. Programmed DNA deletions in Tetrahymena: mechanisms and implications. , 1996, Trends in genetics : TIG.
[58] D. Prescott,et al. Macronuclear gene-sized molecules of hypotrichs. , 1995, Nucleic acids research.
[59] R. Hinrichsen,et al. Extremely short 20-33 nucleotide introns are the standard length in Paramecium tetraurelia. , 1994, Nucleic acids research.
[60] L. Klobutcher,et al. Characterization of transcription initiation, translation initiation, and poly(A) addition sites in the gene-sized macronuclear DNA molecules of Euplotes. , 1994, Nucleic acids research.
[61] D M Prescott,et al. The unusual organization and processing of genomic DNA in hypotrichous ciliates. , 1992, Trends in genetics : TIG.
[62] TGA cysteine codons and intron sequences in conserved and nonconserved positions are found in macronuclear RNA polymerase genes of Euplotes octocarinatus. , 1992, Nucleic acids research.
[63] David R. Wolf,et al. Base compositional structure of genomes. , 1992, Genomics.
[64] F. Meyer,et al. Pheromone 4 gene of Euplotes octocarinatus. , 1992, Developmental genetics.
[65] K. Heckmann,et al. Two introns in the pheromone 3-encoding gene of Euplotes octocarinatus. , 1991, Gene.
[66] A. Hasilik,et al. UGA is translated as cysteine in pheromone 3 of Euplotes octocarinatus. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[67] D. Martindale,et al. Nuclear pre-mRNA introns: analysis and comparison of intron sequences from Tetrahymena thermophila and other eukaryotes. , 1990, Nucleic acids research.
[68] B. Dyer. Metopus, Cyclidium and Sonderia: ciliates enriched and cultured from sulfureta of a microbial mat community. , 1989, Bio Systems.
[69] E. Helftenbein,et al. Both alpha-tubulin genes are transcriptionally active in Stylonychia lemnae. , 1988, Current genetics.
[70] K. Conzelmann,et al. Nucleotide sequence and expression of two β-tubulin genes in Stylonychia lemnae , 1987 .
[71] D. Ammermann. Giant chromosomes in ciliates. , 1987, Results and problems in cell differentiation.
[72] K. Conzelmann,et al. Nucleotide sequence and expression of two beta-tubulin genes in Stylonychia lemnae. , 1987, Journal of molecular biology.
[73] G. Steinbrück. Molecular reorganization during nuclear differentiation in ciliates. , 1986, Results and problems in cell differentiation.
[74] T Platt,et al. Transcription termination and the regulation of gene expression. , 1986, Annual review of biochemistry.
[75] B. Hall,et al. Effects of alterations in the 3′ flanking sequence on in vivo and in vitro expression of the yeast SUP4‐o tRNATyr gene. , 1985, The EMBO journal.
[76] E. Meyer,et al. Does Paramecium primaurelia use a different genetic code in its macronucleus? , 1985, Nature.
[77] N. Proudfoot,et al. 3′ Non-coding region sequences in eukaryotic messenger RNA , 1976, Nature.
[78] Gretchen Mckean. A Study of the Ciliated Protozoon Nyctotherus Ovalis Morphology: Generaland Ultrastructural Life Cycle: Anisogamonty and Division , 1972 .
[79] R. Wichterman. Division and conjugation in Nyctotherus cordiformis (EHr.) Stein (Protozoa, Ciliata) with special reference to the nuclear phenomena , 1937 .