Spatial transcriptomics: Technologies, applications and experimental considerations
暂无分享,去创建一个
A. Buzdin | Bin Liu | Xinmin Li | Gexin Zhao | Xiaofeng Mu | Ye Wang | YooJin Lee | Joseph Zhao | Hong Chen
[1] J. Rao,et al. Artificial intelligence-driven morphology-based enrichment of malignant cells from body fluid , 2023, bioRxiv.
[2] S. Bullman,et al. Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer , 2022, Nature.
[3] John O. Prior,et al. The neurons that restore walking after paralysis , 2022, Nature.
[4] Carolyn A. Morrison,et al. High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue , 2022, bioRxiv.
[5] Bian Hu,et al. A review of spatial profiling technologies for characterizing the tumor microenvironment in immuno-oncology , 2022, Frontiers in Immunology.
[6] Zachary R. Lewis,et al. High-plex imaging of RNA and proteins at subcellular resolution in fixed tissue by spatial molecular imaging. , 2022, Nature biotechnology.
[7] Y. Saeys,et al. A cellular hierarchy in melanoma uncouples growth and metastasis , 2022, Nature.
[8] Y. Chung,et al. Spatiotemporal dynamics of macrophage heterogeneity and a potential function of Trem2hi macrophages in infarcted hearts , 2022, Nature Communications.
[9] E. Lundberg,et al. The emerging landscape of spatial profiling technologies , 2022, Nature Reviews Genetics.
[10] Liangliang Xu,et al. Reshaping the systemic tumor immune environment (STIE) and tumor immune microenvironment (TIME) to enhance immunotherapy efficacy in solid tumors , 2022, Journal of Hematology & Oncology.
[11] Brian R. Long,et al. Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH , 2022, Science.
[12] L. Luo,et al. A preoptic neuronal population controls fever and appetite during sickness , 2022, Nature.
[13] J. Blay,et al. Pembrolizumab in soft-tissue sarcomas with tertiary lymphoid structures: a phase 2 PEMBROSARC trial cohort , 2022, Nature Medicine.
[14] Yuxiang Li,et al. High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae. , 2022, Developmental cell.
[15] Cristina Zibetti. Deciphering the Retinal Epigenome during Development, Disease and Reprogramming: Advancements, Challenges and Perspectives , 2022, Cells.
[16] Amanda M. Saravia-Butler,et al. System-wide transcriptome damage and tissue identity loss in COVID-19 patients , 2022, Cell Reports Medicine.
[17] Andreas R. Pfenning,et al. Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration , 2021, bioRxiv.
[18] S. Teichmann,et al. A spatial multi-omics atlas of the human lung reveals a novel immune cell survival niche , 2021, bioRxiv.
[19] G. Nolan,et al. Annotation of Spatially Resolved Single-cell Data with STELLAR , 2021, bioRxiv.
[20] Xinmin Li,et al. From bulk, single-cell to spatial RNA sequencing , 2021, International journal of oral science.
[21] Huanming Yang,et al. Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays , 2021, Cell.
[22] Yuxiang Li,et al. Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis , 2021, bioRxiv.
[23] Y. Saeys,et al. Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches , 2021, bioRxiv.
[24] K. Zatloukal,et al. Highly resolved spatial transcriptomics for detection of rare events in cells , 2021, bioRxiv.
[25] Hongkui Zeng,et al. Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH , 2021, Nature.
[26] Ash A. Alizadeh,et al. Atlas of clinically distinct cell states and ecosystems across human solid tumors , 2021, Cell.
[27] J. Todd,et al. Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus , 2021, Nature Genetics.
[28] Rachel S. G. Sealfon,et al. A reference tissue atlas for the human kidney , 2021, bioRxiv.
[29] H. Shah,et al. Molecular Profiling of Coronavirus Disease 2019 (COVID-19) Autopsies Uncovers Novel Disease Mechanisms , 2021, The American Journal of Pathology.
[30] Baocun Sun,et al. Spatial maps of hepatocellular carcinoma transcriptomes highlight an unexplored landscape of heterogeneity and a novel gene signature for survival , 2021, Cancer cell international.
[31] Ruibin Xi,et al. Spatiotemporal Immune Landscape of Colorectal Cancer Liver Metastasis at Single-Cell Level. , 2021, Cancer discovery.
[32] D. Theodorescu,et al. An N-Cadherin 2 expressing epithelial cell subpopulation predicts response to surgery, chemotherapy and immunotherapy in bladder cancer , 2021, Nature Communications.
[33] Gustavo S. França,et al. Exploring tissue architecture using spatial transcriptomics , 2021, Nature.
[34] George D. Cresswell,et al. Phenotypic plasticity and genetic control in colorectal cancer evolution , 2021, bioRxiv.
[35] S. Weissman,et al. Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architecture , 2021, Cell Discovery.
[36] M. Herbert,et al. Single-cell roadmap of human gonadal development , 2021, Nature.
[37] E. Yaksi,et al. Diversity and function of motile ciliated cell types within ependymal lineages of the zebrafish brain , 2021, bioRxiv.
[38] Huanming Yang,et al. Large field of view-spatially resolved transcriptomics at nanoscale resolution , 2021 .
[39] Michael T. Eadon,et al. The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline , 2021, eLife.
[40] Howard Y. Chang,et al. Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set , 2020, Science.
[41] Junedh M. Amrute,et al. Spatial multi-omic map of human myocardial infarction , 2020, Nature.
[42] Bryan D. Bryson,et al. Single Cell and Spatial Transcriptomics Defines the Cellular Architecture of the Antimicrobial Response Network in Human Leprosy Granulomas , 2020, bioRxiv.
[43] David F. Boyd,et al. Exuberant fibroblast activity compromises lung function via ADAMTS4 , 2020, Nature.
[44] T. Ohta,et al. Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast , 2020, medRxiv.
[45] Edward S Boyden,et al. Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems , 2020, Science.
[46] G. Mills,et al. Multiplex digital spatial profiling of proteins and RNA in fixed tissue , 2020, Nature Biotechnology.
[47] R. Herbst,et al. Biomarkers Associated with Beneficial PD-1 Checkpoint Blockade in Non–Small Cell Lung Cancer (NSCLC) Identified Using High-Plex Digital Spatial Profiling , 2020, Clinical Cancer Research.
[48] J. Kleinman,et al. Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex , 2020, Nature Neuroscience.
[49] J. Wargo,et al. B cells are associated with survival and immunotherapy response in sarcoma , 2020, Nature.
[50] Joakim Lundeberg,et al. Molecular atlas of the adult mouse brain , 2019, Science Advances.
[51] Daniel J. Miller,et al. Spatiotemporal transcriptomic divergence across human and macaque brain development , 2018, Science.
[52] Nimrod D. Rubinstein,et al. Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region , 2018, Science.
[53] Catherine E. Braine,et al. Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis , 2018, Science.
[54] Patrik L. Ståhl,et al. Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity , 2018, Nature Communications.
[55] Patrik L. Ståhl,et al. Visualization and analysis of gene expression in tissue sections by spatial transcriptomics , 2016, Science.
[56] X. Zhuang,et al. Spatially resolved, highly multiplexed RNA profiling in single cells , 2015, Science.
[57] U. Landegren,et al. Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21 , 1997, Nature Genetics.
[58] OUP accepted manuscript , 2022, Cardiovascular Research.