Cell-based assays to support the profiling of small molecules with histone methyltransferase and demethylase modulatory activity.

Histone methylation is a prevalent and dynamic chromatin modification, executed by the action of histone methyltransferases (HMTs) and demethylases (HDMs). Aberrant activity of many of these enzymes is associated with human disease, hence, there is a growing interest in identifying corresponding small molecule inhibitors with therapeutic potential. To date, most of the technologies supporting the identification of these inhibitors constitute in vitro biochemical assays which, although robust and sensitive, do not study HMTs and HDMs in their native cellular state nor provide information of inhibitor's cell permeability and toxicity. The evident need for complementary cellular approaches has recently propelled the development of cell-based assays that enable screening of HMT and HDM enzymes in a more relevant environment. Here, we highlight current cellular methodologies for HMT and HDM drug discovery support. We anticipate that implementation of these cell-based assays will positively impact the discovery of pharmacologically potent HMT and HDM inhibitors.

[1]  Peter J. Park,et al.  An assessment of histone-modification antibody quality , 2010, Nature Structural &Molecular Biology.

[2]  Haiching Ma,et al.  Development of multiple cell-based assays for the detection of histone H3 Lys27 trimethylation (H3K27me3). , 2013, Assay and drug development technologies.

[3]  E. Cundari,et al.  An High-Throughput In Vivo Screening System to Select H3K4-Specific Histone Demethylase Inhibitors , 2014, PloS one.

[4]  Peter Francis,et al.  Demonstrating Enhanced Throughput of RapidFire Mass Spectrometry through Multiplexing Using the JmjD2d Demethylase as a Model System , 2014, Journal of biomolecular screening.

[5]  Matthieu Schapira,et al.  Catalytic site remodelling of the DOT1L methyltransferase by selective inhibitors , 2012, Nature Communications.

[6]  P. Nordlund,et al.  The cellular thermal shift assay for evaluating drug target interactions in cells , 2014, Nature Protocols.

[7]  A. Cheng,et al.  Screening for lysine-specific demethylase-1 inhibitors using a label-free high-throughput mass spectrometry assay. , 2011, Analytical biochemistry.

[8]  Pankaj Agarwal,et al.  A novel approach applying a chemical biology strategy in phenotypic screening reveals pathway-selective regulators of histone 3 K27 tri-methylation. , 2014, Molecular bioSystems.

[9]  Yan Liu,et al.  EZH2 inhibition as a therapeutic strategy for lymphoma with EZH2-activating mutations , 2012, Nature.

[10]  Qiang Yu,et al.  The histone methyltransferase inhibitor, DZNep, up-regulates TXNIP, increases ROS production, and targets leukemia cells in AML. , 2010, Blood.

[11]  Kristian Helin,et al.  Molecular mechanisms and potential functions of histone demethylases , 2012, Nature Reviews Molecular Cell Biology.

[12]  Melanie V. Leveridge,et al.  Enabling Lead Discovery for Histone Lysine Demethylases by High-Throughput RapidFire Mass Spectrometry , 2012, Journal of biomolecular screening.

[13]  D. Patel,et al.  Small molecule epigenetic inhibitors targeted to histone lysine methyltransferases and demethylases , 2013, Quarterly Reviews of Biophysics.

[14]  Alan J. Tackett,et al.  Identification of Small Molecule Inhibitors of Jumonji AT-rich Interactive Domain 1B (JARID1B) Histone Demethylase by a Sensitive High Throughput Screen* , 2013, The Journal of Biological Chemistry.

[15]  H. Leonhardt,et al.  Fluorescence microscopy-based high-throughput screening for factors involved in gene silencing. , 2013, Methods in molecular biology.

[16]  R. Ames,et al.  A Cell-Based High-Throughput Screening Assay to Measure Cellular Histone H3 Lys27 Trimethylation with a Modified Dissociation-Enhanced Lanthanide Fluorescent Immunoassay , 2012, Journal of biomolecular screening.

[17]  Melanie Leveridge,et al.  Configuration of a High-Content Imaging Platform for Hit Identification and Pharmacological Assessment of JMJD3 Demethylase Enzyme Inhibitors , 2012, Journal of biomolecular screening.

[18]  P. Cheung,et al.  Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing , 2011, Proceedings of the National Academy of Sciences.

[19]  P. Nordlund,et al.  Monitoring Drug Target Engagement in Cells and Tissues Using the Cellular Thermal Shift Assay , 2013, Science.

[20]  M. Mackeen,et al.  Small-molecule-based inhibition of histone demethylation in cells assessed by quantitative mass spectrometry. , 2010, Journal of proteome research.

[21]  A. Jadhav,et al.  Quantitative High-Throughput Screening Identifies 8-Hydroxyquinolines as Cell-Active Histone Demethylase Inhibitors , 2010, PloS one.

[22]  A. Mai,et al.  Targeting Histone Demethylases: A New Avenue for the Fight against Cancer. , 2011, Genes & cancer.

[23]  P. Trojer,et al.  Target-based approach to inhibitors of histone arginine methyltransferases. , 2007, Journal of medicinal chemistry.

[24]  G. Hager,et al.  High-content fluorescence-based screening for epigenetic modulators. , 2006, Methods in enzymology.

[25]  Feng Liu,et al.  A chemical probe selectively inhibits G9a and GLP methyltransferase activity in cells. , 2011, Nature chemical biology.

[26]  C. Bountra,et al.  Epigenetic protein families: a new frontier for drug discovery , 2012, Nature Reviews Drug Discovery.

[27]  W. Sippl,et al.  Cancer treatment of the future: inhibitors of histone methyltransferases. , 2009, The international journal of biochemistry & cell biology.

[28]  S. Peña-Llopis,et al.  A small molecule modulates Jumonji histone demethylase activity and selectively inhibits cancer growth , 2013, Nature Communications.

[29]  Yi Zhang,et al.  SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex. , 2004, Molecular cell.

[30]  Stefan Prechtl,et al.  Quantification of Histone H3 Lys27 Trimethylation (H3K27me3) by High-Throughput Microscopy Enables Cellular Large-Scale Screening for Small-Molecule EZH2 Inhibitors , 2015, Journal of biomolecular screening.

[31]  E. Novellino,et al.  Pan-histone demethylase inhibitors simultaneously targeting Jumonji C and lysine-specific demethylases display high anticancer activities. , 2014, Journal of medicinal chemistry.

[32]  P. Cole,et al.  Chemical probes for histone-modifying enzymes. , 2008, Nature chemical biology.

[33]  Yonghong Xiao,et al.  Selective killing of mixed lineage leukemia cells by a potent small-molecule DOT1L inhibitor. , 2011, Cancer cell.

[34]  Jian Jin,et al.  Targets in Epigenetics: Inhibiting the Methyl Writers of the Histone Code , 2011, Current chemical genomics.

[35]  S. Frye,et al.  Optimization of cellular activity of G9a inhibitors 7-aminoalkoxy-quinazolines. , 2011, Journal of medicinal chemistry.

[36]  D. Maloney,et al.  A Cell-Permeable Ester Derivative of the JmjC Histone Demethylase Inhibitor IOX1 , 2014, ChemMedChem.

[37]  Karl Mechtler,et al.  Reversal of H3K9me2 by a small-molecule inhibitor for the G9a histone methyltransferase. , 2007, Molecular cell.

[38]  T. Machleidt,et al.  TR-FRET Cellular Assays for Interrogating Posttranslational Modifications of Histone H3 , 2011, Journal of biomolecular screening.

[39]  A. Simeonov,et al.  Methods for Activity Analysis of the Proteins that Regulate Histone Methylation , 2011, Current chemical genomics.

[40]  Chao Xu,et al.  Epigenetic targets and drug discovery: part 1: histone methylation. , 2014, Pharmacology & therapeutics.