A novel approach to molecular similarity

SummaryWe review briefly the general problem of assessing the similarity between one molecule and another. We propose a novel approach to the quantitative estimation of the similarity of two electron distributions. The procedure is based on momentum space concepts, and avoids many of the difficulties associated with the usual position space definitions. Results are presented for the model systems CH3CH2CH3, CH3OCH3, CH3SCH3, H2O and H2S.

[1]  D. L. Cooper,et al.  Momentum space studies of large polyenes , 1989 .

[2]  P.-L. Chau,et al.  Molecular recognition: blind-searching for regions of strong structural match on the surfaces of two dissimilar molecules , 1988 .

[3]  Ramon Carbo,et al.  How similar is a molecule to another? An electron density measure of similarity between two molecular structures , 1980 .

[4]  Michael J. Frisch,et al.  Self‐consistent molecular orbital methods 25. Supplementary functions for Gaussian basis sets , 1984 .

[5]  Edward E. Hodgkin,et al.  Molecular similarity based on electrostatic potential and electric field , 1987 .

[6]  Peter Willett,et al.  Upperbound procedures for the identification of similar three-dimensional chemical structures , 1989, J. Comput. Aided Mol. Des..

[7]  D. L. Cooper,et al.  Bond formation in momentum space , 1987 .

[8]  W. Graham Richards,et al.  Quantitative measures of similarity between pharmacologically active compounds , 1986 .

[9]  V. H. Smith,et al.  Evaluation of Momentum Distributions and Compton Profiles for Atomic and Molecular Systems , 1977 .

[10]  W. Graham Richards,et al.  A Quantum Chemical Study of Insect Juvenile Hormone Mimics: The Active Conformation and the Electrostatic Similarities , 1987 .

[11]  David L. Cooper,et al.  Ab initio computation of molecular similarity , 1985 .

[12]  R. Ponec Topological aspects of chemical reactivity. On the similarity of molecular structures , 1987 .

[13]  Ramon Carbó,et al.  LCAO–MO similarity measures and taxonomy† , 1987 .

[14]  E. Davidson,et al.  Molecular electron density distributions in position and momentum space , 1985 .