Applying data fusion techniques for benthic habitat mapping and monitoring in a coral reef ecosystem

Accurate mapping and effective monitoring of benthic habitat in the Florida Keys are critical in developing management strategies for this valuable coral reef ecosystem. For this study, a framework was designed for automated benthic habitat mapping by combining multiple data sources (hyperspectral, aerial photography, and bathymetry data) and four contemporary imagery processing techniques (data fusion, Object-based Image Analysis (OBIA), machine learning, and ensemble analysis). In the framework, 1-m digital aerial photograph was first merged with 17-m hyperspectral imagery and 10-m bathymetry data using a pixel/feature-level fusion strategy. The fused dataset was then preclassified by three machine learning algorithms (Random Forest, Support Vector Machines, and k-Nearest Neighbor). Final object-based habitat maps were produced through ensemble analysis of outcomes from three classifiers. The framework was tested for classifying a group-level (3-class) and code-level (9-class) habitats in a portion of the Florida Keys. Informative and accurate habitat maps were achieved with an overall accuracy of 88.5% and 83.5% for the group-level and code-level classifications, respectively.

[1]  Joydeep Ghosh,et al.  Investigation of the random forest framework for classification of hyperspectral data , 2005, IEEE Transactions on Geoscience and Remote Sensing.

[2]  J. Fleiss Statistical methods for rates and proportions , 1974 .

[3]  J. R. Landis,et al.  The measurement of observer agreement for categorical data. , 1977, Biometrics.

[4]  Gary A. Shaw,et al.  Spectral Imaging for Remote Sensing , 2003 .

[5]  M. P. Lesser,et al.  Bathymetry, water optical properties, and benthic classification of coral reefs using hyperspectral remote sensing imagery , 2007, Coral Reefs.

[6]  Jonathan Cheung-Wai Chan,et al.  Evaluation of random forest and adaboost tree-based ensemble classification and spectral band selection for ecotope mapping using airborne hyperspectral imagery , 2008 .

[7]  P. Hardin Parametric and nearest-neighbor methods for hybrid classification: a comparison of pixel assignment accuracy , 1994 .

[8]  Caiyun Zhang,et al.  Object-based Vegetation Mapping in the Kissimmee River Watershed Using HyMap Data and Machine Learning Techniques , 2013, Wetlands.

[9]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[10]  B. Deronde,et al.  Mapping of coral reefs using hyperspectral CASI data; a case study: Fordata, Tanimbar, Indonesia , 2008 .

[11]  Biogeography Program,et al.  Benthic Habitats of the Florida Keys , 1998 .

[12]  S. Phinn,et al.  Multi-scale, object-based image analysis for mapping geomorphic and ecological zones on coral reefs , 2012 .

[13]  Giles M. Foody,et al.  Mapping a specific class with an ensemble of classifiers , 2007 .

[14]  Thomas Blaschke,et al.  Object based image analysis for remote sensing , 2010 .

[15]  Stuart R. Phinn,et al.  Multi-site evaluation of IKONOS data for classification of tropical coral reef environments , 2003 .

[16]  Vittorio E. Brando,et al.  Increased spectral resolution enhances coral detection under varying water conditions , 2013 .

[17]  G. Foody Thematic map comparison: Evaluating the statistical significance of differences in classification accuracy , 2004 .

[18]  Albert Olioso,et al.  Accuracy of IKONOS for mapping benthic coral-reef habitats: a case study from the Puerto Morelos Reef National Park, Mexico , 2013 .

[19]  A. Solberg,et al.  Data Fusion for Remote-Sensing Applications , 2006 .

[20]  Exams Tuk PHOTOGRAMMETRY & REMOTE SENSING , 2016 .

[21]  Jixian Zhang Multi-source remote sensing data fusion: status and trends , 2010 .

[22]  Jungho Im,et al.  ISPRS Journal of Photogrammetry and Remote Sensing , 2022 .

[23]  Jon Atli Benediktsson,et al.  Machine Learning Techniques in Remote Sensing Data Analysis , 2009 .

[24]  Caiyun Zhang,et al.  Combining object-based texture measures with a neural network for vegetation mapping in the Everglades from hyperspectral imagery , 2012 .

[25]  Derek D. Lichti,et al.  ISPRS Journal of Photogrammetry and Remote Sensing theme issue “Terrestrial Laser Scanning” , 2006 .

[26]  Sunil Narumalani,et al.  Enhancing the detection and classification of coral reef and associated benthic habitats: A hyperspectral remote sensing approach , 2007 .

[27]  Vladimir N. Vapnik,et al.  The Nature of Statistical Learning Theory , 2000, Statistics for Engineering and Information Science.

[28]  U. Benz,et al.  Multi-resolution, object-oriented fuzzy analysis of remote sensing data for GIS-ready information , 2004 .

[29]  BertelsL.,et al.  Mapping of coral reefs using hyperspectral CASI data; a case study , 2008 .

[30]  P. Switzer,et al.  A transformation for ordering multispectral data in terms of image quality with implications for noise removal , 1988 .

[31]  L. S. Davis,et al.  An assessment of support vector machines for land cover classi(cid:142) cation , 2002 .

[32]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[33]  D. Rundquist,et al.  Benthic Habitat Mapping in Tropical Marine Environments Using QuickBird Multispectral Data , 2006 .

[34]  Sarah L. Benfield,et al.  Mapping the distribution of coral reefs and associated sublittoral habitats in Pacific Panama: a comparison of optical satellite sensors and classification methodologies , 2007 .

[35]  Caiyun Zhang,et al.  Data fusion and classifier ensemble techniques for vegetation mapping in the coastal Everglades , 2014 .

[36]  J. R. Sveinsson,et al.  Mapping of hyperspectral AVIRIS data using machine-learning algorithms , 2009 .

[37]  Wojciech M. Klonowski,et al.  Shallow water substrate mapping using hyperspectral remote sensing , 2011 .

[38]  Caiyun Zhang,et al.  Object-based benthic habitat mapping in the Florida Keys from hyperspectral imagery , 2013 .

[39]  Wei Zhang,et al.  Multiple Classifier System for Remote Sensing Image Classification: A Review , 2012, Sensors.

[40]  R. Pu,et al.  Mapping and assessing seagrass along the western coast of Florida using Landsat TM and EO-1 ALI/Hyperion imagery , 2012 .

[41]  Chih-Jen Lin,et al.  A Practical Guide to Support Vector Classication , 2008 .

[42]  Luisa Micó,et al.  Comparison of Classifier Fusion Methods for Classification in Pattern Recognition Tasks , 2006, SSPR/SPR.

[43]  Brian Johnson,et al.  Unsupervised image segmentation evaluation and refinement using a multi-scale approach , 2011 .

[44]  Timothy A. Warner,et al.  Kernel-Based Texture in Remote Sensing Image Classification , 2011 .

[45]  Russell G. Congalton,et al.  Assessing the accuracy of remotely sensed data : principles and practices , 1998 .

[46]  Russell Congalton,et al.  Assessing the Accuracy of Remotely Sensed Data: Principles and Practices, Second Edition , 1998 .

[47]  Chris Roelfsema,et al.  Mapping seagrass species, cover and biomass in shallow waters : An assessment of satellite multi-spectral and airborne hyper-spectral imaging systems in Moreton Bay (Australia) , 2008 .

[48]  Peter J. Mumby,et al.  Mapping marine environments with IKONOS imagery: enhanced spatial resolution can deliver greater thematic accuracy , 2002 .

[49]  Mark E. Monaco,et al.  Mapping southern Florida's shallow-water coral ecosystems : an implementation plan , 2005 .

[50]  Caiyun Zhang Combining Hyperspectral and Lidar Data for Vegetation Mapping in the Florida Everglades , 2014 .

[51]  W. Grove Statistical Methods for Rates and Proportions, 2nd ed , 1981 .