Genomic adaptation of flowering‐time genes during the expansion of rice cultivation area
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M. Yano | H. Sakai | H. Itoh | T. Izawa | Jianzhon Wu | J. Yonemaru | S. Fukuoka | Kyohei Shibasaki | Kaede C. Wada | K. Wada | Hironori Itoh
[1] Dong Cao,et al. Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield , 2017, Nature Genetics.
[2] E. Buckler,et al. A study of allelic diversity underlying flowering-time adaptation in maize landraces , 2017, Nature Genetics.
[3] Kaworu Ebana,et al. Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. , 2016, Plant & cell physiology.
[4] M. Yamasaki,et al. Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice , 2016, Nature Genetics.
[5] M. Yano,et al. Advanced backcross QTL analysis reveals complicated genetic control of rice grain shape in a japonica × indica cross , 2015, Breeding science.
[6] F. Taguchi-Shiobara,et al. Genetic architecture of variation in heading date among Asian rice accessions , 2015, BMC Plant Biology.
[7] Haiyang Wang,et al. Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice , 2014, Proceedings of the National Academy of Sciences.
[8] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[9] Cai-guo Xu,et al. Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response1[W][OPEN] , 2014, Plant Physiology.
[10] Rachel S. Meyer,et al. Evolution of crop species: genetics of domestication and diversification , 2013, Nature Reviews Genetics.
[11] M. Yano,et al. Natural Variation of the RICE FLOWERING LOCUS T 1 Contributes to Flowering Time Divergence in Rice , 2013, PloS one.
[12] M. Yano,et al. Detection of QTLs to reduce cadmium content in rice grains using LAC23/Koshihikari chromosome segment substitution lines , 2013, Breeding science.
[13] Kaworu Ebana,et al. Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response , 2013, The Plant journal : for cell and molecular biology.
[14] Zhijun Cheng,et al. Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia , 2013, Proceedings of the National Academy of Sciences.
[15] D. Schwartz,et al. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data , 2013, Rice.
[16] Haiyang Wang,et al. Ehd4 Encodes a Novel and Oryza-Genus-Specific Regulator of Photoperiodic Flowering in Rice , 2013, PLoS genetics.
[17] M. Yano,et al. Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation , 2012, Theoretical and Applied Genetics.
[18] A. Fujiyama,et al. A map of rice genome variation reveals the origin of cultivated rice , 2012, Nature.
[19] Kaworu Ebana,et al. Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering. , 2012, Plant & cell physiology.
[20] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[21] Makoto Takano,et al. Molecular Dissection of the Roles of Phytochrome in Photoperiodic Flowering in Rice1[C][W][OA] , 2011, Plant Physiology.
[22] K. Shimamoto,et al. Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice. , 2011, Genes & genetic systems.
[23] John Quackenbush,et al. Defining an informativeness metric for clustering gene expression data , 2011, Bioinform..
[24] M. Yano,et al. Germplasm enhancement by developing advanced plant materials from diverse rice accessions , 2010 .
[25] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[26] Tomoko Ito,et al. Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L. , 2010, Molecular Genetics and Genomics.
[27] M. Yano,et al. A pair of floral regulators sets critical day length for Hd3a florigen expression in rice , 2010, Nature Genetics.
[28] Jianmin Wan,et al. DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously1[W][OA] , 2010, Plant Physiology.
[29] M. Yano,et al. Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars , 2010, Theoretical and Applied Genetics.
[30] M. Yano,et al. The Role of Casein Kinase II in Flowering Time Regulation Has Diversified during Evolution1[W][OA] , 2009, Plant Physiology.
[31] Kenneth L. McNally,et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice , 2009, Proceedings of the National Academy of Sciences.
[32] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[33] H. Kanamori,et al. Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza , 2009, Rice.
[34] T. Izawa,et al. Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars. , 2008, Plant & cell physiology.
[35] Lei Wang,et al. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice , 2008, Nature Genetics.
[36] Shojiro Tamaki,et al. Hd3a and RFT1 are essential for flowering in rice , 2008, Development.
[37] T. Izawa,et al. Adaptation of flowering-time by natural and artificial selection in Arabidopsis and rice. , 2007, Journal of experimental botany.
[38] M. Yano,et al. Development of Chromosome Segment Substitution Lines Derived from Backcross between indica Donor Rice Cultivar ‘Nona Bokra’ and japonica Recipient Cultivar ‘Koshihikari’ , 2007 .
[39] E. Ohtsubo,et al. Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs. , 2007, Genes & genetic systems.
[40] Bruce D. Smith,et al. The Molecular Genetics of Crop Domestication , 2006, Cell.
[41] M. Kawase,et al. Development of an RFLP-based Rice Diversity Research Set of Germplasm , 2005 .
[42] Yoshinobu Takeuchi,et al. Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari' , 2005 .
[43] Kazuyuki Doi,et al. Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. , 2004, Genes & development.
[44] Takashi Araki,et al. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. , 2002, Plant & cell physiology.
[45] M. Yano,et al. Genetic control of flowering time in rice, a short-day plant. , 2001, Plant physiology.
[46] M. Yano,et al. Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS , 2000, Plant Cell.
[47] G. Khush. Origin, dispersal, cultivation and variation of rice , 1997, Plant Molecular Biology.
[48] M. Kimura,et al. The neutral theory of molecular evolution. , 1983, Scientific American.
[49] M. Kimura. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.
[50] W. F. Thompson,et al. Rapid isolation of high molecular weight plant DNA. , 1980, Nucleic acids research.
[51] T. Satake,et al. Male Sterility Caused by Cooling Treatment at the Young Microspore Stage in Rice Plants : V. Estimations of pollen developmental stage and the most sensitive stage to coolness , 1970 .
[52] T. Nagata. STUDIES ON THE SIGNIFICANCE OF INDETERMINATE GROWTH HABIT IN BREEDING SOYBEANS. : IV. Varietal difference in the fruiting process attributable to the habit. -b. Internal development of the seeds. , 1967 .
[53] Kaworu Ebana,et al. HapRice, an SNP haplotype database and a web tool for rice. , 2014, Plant & cell physiology.
[54] Claude-Alain H. Roten,et al. Theoretical and practical advances in genome halving , 2004 .
[55] T. Katayama. Photoperiodism in the Genus Oryza : IV. Combinations of plant age, day length and number of treatment , 1974 .