Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling
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[1] Bao-ku Zhou,et al. Long-term N fertilization altered 13C-labeled fungal community composition but not diversity in wheat rhizosphere of Chinese black soil , 2019, Soil Biology and Biochemistry.
[2] Jennifer E. Schmidt,et al. Reframing the Debate Surrounding the Yield Gap between Organic and Conventional Farming , 2019, Agronomy.
[3] Karoline Faust,et al. Can we predict keystones? , 2018, Nature Reviews Microbiology.
[4] T. Northen,et al. A New Method to Correct for Habitat Filtering in Microbial Correlation Networks , 2018, bioRxiv.
[5] J. Gilbert,et al. Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil , 2018, Soil Biology and Biochemistry.
[6] M. V. D. van der Heijden,et al. Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots , 2018, The ISME Journal.
[7] T. Rütting,et al. Relative abundance of denitrifying and DNRA bacteria and their activity determine nitrogen retention or loss in agricultural soil , 2018, Soil Biology and Biochemistry.
[8] Karoline Faust,et al. From hairballs to hypotheses–biological insights from microbial networks , 2018, FEMS microbiology reviews.
[9] L. Drinkwater,et al. Eighty years of maize breeding alters plant nitrogen acquisition but not rhizosphere bacterial community composition , 2018, Plant and Soil.
[10] A. Meade,et al. Apportioning bacterial carbon source utilization in soil using 14C isotope analysis of FISH‐targeted bacterial populations sorted by fluorescence activated cell sorting (FACS): 14C‐FISH‐FACS , 2018, Environmental microbiology reports.
[11] Eoin L. Brodie,et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly , 2018, Nature Microbiology.
[12] G. Wei,et al. Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale , 2018 .
[13] Dennis C. Bryant,et al. The century experiment: the first twenty years of UC Davis' Mediterranean agroecological experiment. , 2018, Ecology.
[14] M. V. D. van der Heijden,et al. Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming , 2018, Microbiome.
[15] D. Coleman-Derr,et al. Drought Stress and Root-Associated Bacterial Communities , 2018, Front. Plant Sci..
[16] A. Mchardy,et al. Investigation of different nitrogen reduction routes and their key microbial players in wood chip-driven denitrification beds , 2017, Scientific Reports.
[17] Pelin Yilmaz,et al. 25 years of serving the community with ribosomal RNA gene reference databases and tools. , 2017, Journal of biotechnology.
[18] A. Kappler,et al. Long term farming systems affect soils potential for N2O production and reduction processes under denitrifying conditions , 2017 .
[19] J. Gilbert,et al. Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields , 2017 .
[20] Wang Chao,et al. Impact of 25 years of inorganic fertilization on diazotrophic abundance and community structure in an acidic soil in southern China , 2017 .
[21] M. Bruns,et al. Underexplored microbial metabolisms for enhanced nutrient recycling in agricultural soils , 2017, AIMS microbiology.
[22] Q. Xiang,et al. Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil , 2017, Front. Microbiol..
[23] W. Shi,et al. How Plant Root Exudates Shape the Nitrogen Cycle. , 2017, Trends in plant science.
[24] F. T. Vries,et al. Below‐ground connections underlying above‐ground food production: a framework for optimising ecological connections in the rhizosphere , 2017 .
[25] P. Crous,et al. Didymellaceae revisited , 2017, Studies in mycology.
[26] R. Daniel,et al. The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment , 2017, Front. Microbiol..
[27] Jia-bao Zhang,et al. Bacterial Community Structure after Long-term Organic and Inorganic Fertilization Reveals Important Associations between Soil Nutrients and Specific Taxa Involved in Nutrient Transformations , 2017, Front. Microbiol..
[28] Eiko E. Kuramae,et al. Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System , 2017, Front. Microbiol..
[29] Mehdi Layeghifard,et al. Disentangling Interactions in the Microbiome: A Network Perspective , 2016, Trends in Microbiology.
[30] C. Wagner-Riddle,et al. Soil microbial communities as potential regulators of in situ N2O fluxes in annual and perennial cropping systems , 2016 .
[31] Youzhi Feng,et al. Consistent responses of the microbial community structure to organic farming along the middle and lower reaches of the Yangtze River , 2016, Scientific Reports.
[32] T. Wubet,et al. Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies , 2016, Front. Microbiol..
[33] R. Griffiths,et al. Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling , 2016, Front. Microbiol..
[34] E. Kuramae,et al. Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere , 2016, The ISME Journal.
[35] Jizhong Zhou,et al. The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. , 2016, Ecology letters.
[36] Shiwei Guo,et al. Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis , 2016 .
[37] N. Johnson,et al. The role of locally adapted mycorrhizas and rhizobacteria in plant–soil feedback systems , 2016 .
[38] J. Kirkegaard,et al. Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil , 2016 .
[39] Paul J. McMurdie,et al. DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.
[40] H. Schmidt,et al. New Methods To Unravel Rhizosphere Processes. , 2016, Trends in plant science.
[41] D. Faure,et al. Engineering the Rhizosphere. , 2016, Trends in Plant Science.
[42] Davey L. Jones,et al. Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes? , 2016, Front. Microbiol..
[43] J. Maciá‐Vicente,et al. A new species of Exophiala associated with roots , 2016, Mycological Progress.
[44] G. Cadisch,et al. Dynamics of bacterial and archaeal amoA gene abundance after additions of organic inputs combined with mineral nitrogen to an agricultural soil , 2016, Nutrient Cycling in Agroecosystems.
[45] K. Foster,et al. The ecology of the microbiome: Networks, competition, and stability , 2015, Science.
[46] D. R. Yadav,et al. Three New Records of Mortierella Species Isolated from Crop Field Soil in Korea , 2015, Mycobiology.
[47] L. Jackson,et al. Tightly-Coupled Plant-Soil Nitrogen Cycling: Comparison of Organic Farms across an Agricultural Landscape , 2015, PloS one.
[48] J. Larsen,et al. Biotic interactions in the rhizosphere in relation to plant and soil nutrient dynamics , 2015 .
[49] Matthew G. Bakker,et al. Impacts of bulk soil microbial community structure on rhizosphere microbiomes of Zea mays , 2015, Plant and Soil.
[50] Jizhong Zhou,et al. Functional Potential of Soil Microbial Communities in the Maize Rhizosphere , 2014, PloS one.
[51] C. Hamel,et al. Soil Fungal Resources in Annual Cropping Systems and Their Potential for Management , 2014, BioMed research international.
[52] D. Geisseler,et al. Long-term effects of mineral fertilizers on soil microorganisms – A review , 2014 .
[53] Stefanie Widder,et al. Deciphering microbial interactions and detecting keystone species with co-occurrence networks , 2014, Front. Microbiol..
[54] H. Heuer,et al. Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce , 2014, Front. Microbiol..
[55] E. Kuramae,et al. Taxonomical and functional microbial community selection in soybean rhizosphere , 2014, The ISME Journal.
[56] K. Smalla,et al. Root exudation and root development of lettuce (Lactuca sativa L. cv. Tizian) as affected by different soils , 2014, Front. Microbiol..
[57] Michael Weiss,et al. Towards a unified paradigm for sequence‐based identification of fungi , 2013, Molecular ecology.
[58] M. Schloter,et al. Different Land Use Intensities in Grassland Ecosystems Drive Ecology of Microbial Communities Involved in Nitrogen Turnover in Soil , 2013, PloS one.
[59] A. Osbourn,et al. Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants , 2013, The ISME Journal.
[60] C. Hawkes,et al. Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models. , 2013, Ecology letters.
[61] L. Philippot,et al. Influence of integrated weed management system on N-cycling microbial communities and N2O emissions , 2013, Plant and Soil.
[62] Susan Holmes,et al. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.
[63] R. Linker,et al. Development of a laser-induced fluorescence imaging system for root activity and rhizosphere visualisation , 2013 .
[64] S. Tringe,et al. Diversity and heritability of the maize rhizosphere microbiome under field conditions , 2013, Proceedings of the National Academy of Sciences.
[65] W. Zhou,et al. Different roles of rhizosphere effect and long-term fertilization in the activity and community structure of ammonia oxidizers in a calcareous fluvo-aquic soil , 2013 .
[66] Zhao-jun Li,et al. [Influences of long-term application of organic and inorganic fertilizers on the composition and abundance of nirS-type denitrifiers in black soil]. , 2012, Huan jing ke xue= Huanjing kexue.
[67] J. Raes,et al. Microbial interactions: from networks to models , 2012, Nature Reviews Microbiology.
[68] Julien F. Ollivier,et al. Nitrogen turnover in soil and global change. , 2011, FEMS microbiology ecology.
[69] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[70] J. Six,et al. Impacts of different N management regimes on nitrifier and denitrifier communities and N cycling in soil microenvironments. , 2010, Soil biology & biochemistry.
[71] Safdar Ali,et al. Soil beneficial bacteria and their role in plant growth promotion: a review , 2010, Annals of Microbiology.
[72] K. Treseder,et al. Microbial communities and their relevance for ecosystem models: Decomposition as a case study , 2010 .
[73] P. Legendre,et al. Associations between species and groups of sites: indices and statistical inference. , 2009, Ecology.
[74] L. Thomashow,et al. Rhizosphere engineering and management for sustainable agriculture , 2009, Plant and Soil.
[75] R. Simpson,et al. Pasture management clearly affects soil microbial community structure and N-cycling bacteria , 2009 .
[76] C. Dambreville,et al. Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates. , 2008, Environmental microbiology.
[77] M. Weintraub,et al. Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes , 2008 .
[78] R. Rodriguez,et al. Stress tolerance in plants via habitat-adapted symbiosis , 2008, The ISME Journal.
[79] T. Moorman,et al. Fluorescent In Situ Hybridization and Micro-autoradiography Applied to Ecophysiology in Soil , 2007 .
[80] G. Garau,et al. Impact of Soil Management on the Functional Activity of Microbial Communities associated to Cork Oak Rhizosphere , 2006, 2006 First International Symposium on Environment Identities and Mediterranean Area.
[81] J. Six,et al. Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems , 2006 .
[82] M E J Newman,et al. Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[83] Peter J. Gregory,et al. Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. , 2005, The New phytologist.
[84] Peter Millard,et al. Unravelling rhizosphere-microbial interactions: opportunities and limitations. , 2004, Trends in microbiology.
[85] J. Germon,et al. Denitrifying bacteria in bulk and maize-rhizospheric soil: diversity and N2O-reducing abilities. , 2004, Canadian journal of microbiology.
[86] F. Dakora,et al. Root exudates as mediators of mineral acquisition in low-nutrient environments , 2002, Plant and Soil.
[87] D. Dubois,et al. Soil Fertility and Biodiversity in Organic Farming , 2002, Science.
[88] P. Legendre,et al. SPECIES ASSEMBLAGES AND INDICATOR SPECIES:THE NEED FOR A FLEXIBLE ASYMMETRICAL APPROACH , 1997 .
[89] S. Plantureux,et al. Influence of mechanical impedance on root exudation of maize seedlings at two development stages , 1995, Plant and Soil.
[90] Katherine Faust,et al. Social Network Analysis: Methods and Applications , 1994 .
[91] F. Botha,et al. Field study reveals core plant microbiota and relative importance of their drivers , 2018, Environmental microbiology.
[92] Shiwei Guo,et al. Alterations in soil fungal community composition and network assemblage structure by different long-term fertilization regimes are correlated to the soil ionome , 2017, Biology and Fertility of Soils.
[93] H. Šantrůčková,et al. A larger investment into exudation by competitive versus conservative plants is connected to more coupled plant–microbe N cycling , 2014, Biogeochemistry.
[94] R. Hemmati. First report of Boeremia exigua on tomato in Iran. , 2014 .
[95] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[96] B. Zebarth,et al. Short‐Term Effects of Mineral and Organic Fertilizer on Denitrifiers, Nitrous Oxide Emissions and Denitrification in Long‐Term Amended Vineyard Soils , 2013 .
[97] Julien F. Ollivier,et al. Nitrogen turnover in soil and global change. FEMS Microbiol Ecol , 2011 .
[98] R. Rodriguez,et al. Habitat-adapted symbiosis as a defense against abiotic and biotic stresses , 2009 .
[99] Gábor Csárdi,et al. The igraph software package for complex network research , 2006 .
[100] U. Hartwig,et al. The regulation of symbiotic N2 fixation: a conceptual model of N feedback from the ecosystem to the gene expression level , 1998 .
[101] S. Wasserman,et al. Social Network Analysis: Methods and Applications , 1994 .