Helicase promotes replication re-initiation from an RNA transcript

[1]  K. Marians,et al.  Replisome-mediated translesion synthesis by a cellular replicase , 2017, The Journal of Biological Chemistry.

[2]  A. Moeller,et al.  Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis , 2017, Proceedings of the National Academy of Sciences.

[3]  R. Wellinger,et al.  Non-Canonical Replication Initiation: You’re Fired! , 2017, Genes.

[4]  J. Tainer,et al.  Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome. , 2017, Structure.

[5]  C. M. Punter,et al.  Simultaneous Real-Time Imaging of Leading and Lagging Strand Synthesis Reveals the Coordination Dynamics of Single Replisomes. , 2016, Molecular cell.

[6]  Robert A. Forties,et al.  DNA looping mediates nucleosome transfer , 2016, Nature Communications.

[7]  A. Aguilera,et al.  Transcription–replication conflicts: how they occur and how they are resolved , 2016, Nature Reviews Molecular Cell Biology.

[8]  Michelle D. Wang,et al.  Single-molecule perspectives on helicase mechanisms and functions , 2016, Critical reviews in biochemistry and molecular biology.

[9]  Michelle D. Wang,et al.  T7 replisome directly overcomes DNA damage , 2015, Nature Communications.

[10]  Smita S. Patel,et al.  Cooperative base pair melting by helicase and polymerase positioned one nucleotide from each other , 2015, eLife.

[11]  Scott Forth,et al.  Dynamic regulation of transcription factors by nucleosome remodeling , 2015, eLife.

[12]  A. Aguilera,et al.  Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system , 2015, Proceedings of the National Academy of Sciences.

[13]  Smita S. Patel,et al.  Helicase and polymerase move together close to the fork junction and copy DNA in one-nucleotide steps. , 2014, Cell reports.

[14]  P. Pasero,et al.  Rescuing stalled or damaged replication forks. , 2013, Cold Spring Harbor perspectives in biology.

[15]  A. Helmrich,et al.  Transcription-replication encounters, consequences and genomic instability , 2013, Nature Structural &Molecular Biology.

[16]  Stephen J. Benkovic,et al.  Supplementary Materials for Direct Observation of Stalled Fork Restart via Fork Regression in the T4 Replication System , 2012 .

[17]  S. Berkowitz,et al.  An Interaction between DNA Polymerase and Helicase Is Essential for the High Processivity of the Bacteriophage T7 Replisome* , 2012, The Journal of Biological Chemistry.

[18]  P. McGlynn,et al.  The conflict between DNA replication and transcription , 2012, Molecular microbiology.

[19]  Roger Woodgate,et al.  Y-family DNA polymerases and their role in tolerance of cellular DNA damage , 2012, Nature Reviews Molecular Cell Biology.

[20]  Joseph T. P. Yeeles,et al.  The Escherichia coli Replisome Is Inherently DNA Damage Tolerant , 2011, Science.

[21]  Michelle D. Wang,et al.  ATP-Induced Helicase Slippage Reveals Highly Coordinated Subunits , 2011, Nature.

[22]  C. Richardson,et al.  Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis , 2011, Proceedings of the National Academy of Sciences.

[23]  T. Helleday,et al.  Pathways of mammalian replication fork restart , 2010, Nature Reviews Molecular Cell Biology.

[24]  S. Benkovic,et al.  Response of the bacteriophage T4 replisome to noncoding lesions and regression of a stalled replication fork. , 2010, Journal of molecular biology.

[25]  M. O’Donnell,et al.  What happens when replication and transcription complexes collide? , 2010, Cell cycle.

[26]  Michelle D. Wang,et al.  Synergistic action of RNA polymerases in overcoming the nucleosomal barrier , 2010, Nature Structural &Molecular Biology.

[27]  T. Ha,et al.  Coordinating DNA replication by means of priming loop and differential synthesis rate , 2009, Nature.

[28]  S. Hamdan,et al.  Motors, switches, and contacts in the replisome. , 2009, Annual review of biochemistry.

[29]  J. Loparo,et al.  Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis , 2009, Nature.

[30]  Michelle D. Wang,et al.  High resolution dynamic mapping of histone-DNA interactions in a nucleosome , 2008, Nature Structural &Molecular Biology.

[31]  M. O’Donnell,et al.  The replisome uses mRNA as a primer after colliding with RNA polymerase , 2008, Nature.

[32]  M. O’Donnell,et al.  Replisome Fate upon Encountering a Leading Strand Block and Clearance from DNA by Recombination Proteins* , 2007, Journal of Biological Chemistry.

[33]  N. Tanner,et al.  Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement. , 2007, Molecular cell.

[34]  Michelle D. Wang,et al.  Single-Molecule Studies Reveal Dynamics of DNA Unwinding by the Ring-Shaped T7 Helicase , 2007, Cell.

[35]  S. Mirkin,et al.  Replication Fork Stalling at Natural Impediments , 2007, Microbiology and Molecular Biology Reviews.

[36]  R. Heller,et al.  Replisome assembly and the direct restart of stalled replication forks , 2006, Nature Reviews Molecular Cell Biology.

[37]  Smita S. Patel,et al.  DNA synthesis provides the driving force to accelerate DNA unwinding by a helicase , 2005, Nature.

[38]  S. Mirkin,et al.  Mechanisms of Transcription-Replication Collisions in Bacteria , 2005, Molecular and Cellular Biology.

[39]  H. Maki,et al.  Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro , 2003, Genes to cells : devoted to molecular & cellular mechanisms.

[40]  Christoph F Schmidt,et al.  Laser-induced heating in optical traps. , 2003, Biophysical journal.

[41]  Michelle D. Wang,et al.  Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Myron F. Goodman,et al.  The importance of repairing stalled replication forks , 2000, Nature.

[43]  C Logie,et al.  Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays , 1997, The EMBO journal.

[44]  C. Richardson,et al.  The Acidic Carboxyl Terminus of the Bacteriophage T7 Gene 4 Helicase/Primase Interacts with T7 DNA Polymerase* , 1997, The Journal of Biological Chemistry.

[45]  Yufei Huang,et al.  Mechanism of ribose 2'-group discrimination by an RNA polymerase. , 1997, Biochemistry.

[46]  S S Patel,et al.  Kinetic mechanism of transcription initiation by bacteriophage T7 RNA polymerase. , 1997, Biochemistry.

[47]  B. Alberts,et al.  A transcribing RNA polymerase molecule survives DNA replication without aborting its growing RNA chain. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[48]  B. Alberts,et al.  The DNA replication fork can pass RNA polymerase without displacing the nascent transcript , 1993, Nature.

[49]  F. Studier,et al.  Large scale purification and biochemical characterization of T7 primase/helicase proteins. Evidence for homodimer and heterodimer formation. , 1992, The Journal of biological chemistry.

[50]  M. Sheetz,et al.  Transcription by single molecules of RNA polymerase observed by light microscopy , 1991, Nature.

[51]  Smita S. Patel,et al.  Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant. , 1991, Biochemistry.

[52]  C. Richardson,et al.  Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7. , 1987, The Journal of biological chemistry.

[53]  Y. Kohara,et al.  Relative roles of T7 RNA polymerase and gene 4 primase for the initiation of T7 phage DNA replication in vivo. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[54]  C. Richardson,et al.  The gene 4 protein of bacteriophage T7. Characterization of helicase activity. , 1983, The Journal of biological chemistry.

[55]  F. Tamanoi,et al.  Initiation of DNA replication at the primary origin of bacteriophage T7 by purified proteins: requirement for T7 RNA polymerase. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[56]  D. Krüger,et al.  Bacteriophage T3 and bacteriophage T7 virus-host cell interactions. , 1981, Microbiological reviews.

[57]  D. Hinkle.  Evidence for direct involvement of T7 RNA polymerase bacteriophage DNA replication , 1980, Journal of virology.

[58]  R. Burgess,et al.  A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. , 1975, Biochemistry.

[59]  A. Bräutigam,et al.  Transcription Unit Mapping in Bacteriophage T7 I. In Vivo Transcription by Escherichia Coli RNA Polymerase , 1973, Journal of virology.

[60]  Michelle D. Wang,et al.  Single-Molecule Optical-Trapping Techniques to Study Molecular Mechanisms of a Replisome. , 2017, Methods in enzymology.

[61]  P. McGlynn.  Helicases at the replication fork. , 2013, Advances in experimental medicine and biology.

[62]  F. Studier,et al.  Cloning and expression of the gene for bacteriophage T7 RNA polymerase. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[63]  C. Fuller,et al.  Mechanisms for the initiation of bacteriophage T7 DNA replication. , 1983, Cold Spring Harbor symposia on quantitative biology.