Imaging the invisible: resolving cellular microcompartments by superresolution microscopy techniques
暂无分享,去创建一个
[1] Stefan W. Hell,et al. Protein localization in electron micrographs using fluorescence nanoscopy , 2010, Nature Methods.
[2] Akihiro Kusumi,et al. Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules. , 2005, Annual review of biophysics and biomolecular structure.
[3] Hazen P. Babcock,et al. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton , 2011, Nature Methods.
[4] D. Hilfiker-Kleiner,et al. SH3P7/mAbp1 deficiency leads to tissue and behavioral abnormalities and impaired vesicle transport , 2006, The EMBO journal.
[5] S. Hess,et al. Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples , 2008, Nature Methods.
[6] Prabuddha Sengupta,et al. Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis , 2011, Nature Methods.
[7] Mike Heilemann,et al. Super-resolution imaging with small organic fluorophores. , 2009, Angewandte Chemie.
[8] W. Webb,et al. Precise nanometer localization analysis for individual fluorescent probes. , 2002, Biophysical journal.
[9] S. Hell,et al. Fluorescence nanoscopy by ground-state depletion and single-molecule return , 2008, Nature Methods.
[10] S. Hell,et al. STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis , 2006, Nature.
[11] Stefan W. Hell,et al. Supporting Online Material Materials and Methods Figs. S1 to S9 Tables S1 and S2 References Video-rate Far-field Optical Nanoscopy Dissects Synaptic Vesicle Movement , 2022 .
[12] T. Waldmann,et al. Nanometer-scale organization of the alpha subunits of the receptors for IL2 and IL15 in human T lymphoma cells , 2008, Journal of Cell Science.
[13] Chenglong Xia,et al. Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes , 2012, Proceedings of the National Academy of Sciences.
[14] S. Hess,et al. Triple-color super-resolution imaging of live cells: resolving submicroscopic receptor organization in the plasma membrane. , 2012, Angewandte Chemie.
[15] J. Dittman,et al. Molecular circuitry of endocytosis at nerve terminals. , 2009, Annual review of cell and developmental biology.
[16] X. Zhuang,et al. Whole cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution , 2008, Nature Methods.
[17] Andrew Leis,et al. Visualizing cells at the nanoscale. , 2009, Trends in biochemical sciences.
[18] G. Augustine,et al. Local Calcium Signaling in Neurons , 2003, Neuron.
[19] Christian Eggeling,et al. rsEGFP2 enables fast RESOLFT nanoscopy of living cells , 2012, eLife.
[20] Carla Coltharp,et al. Superresolution microscopy for microbiology , 2012, Cellular microbiology.
[21] Cherisse R. Loucks,et al. Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria , 2011, Science.
[22] Reinhard Jahn,et al. SNAREs — engines for membrane fusion , 2006, Nature Reviews Molecular Cell Biology.
[23] W. E. Moerner,et al. Microscopy beyond the diffraction limit using actively controlled single molecules , 2012, Journal of microscopy.
[24] N. Johnsson,et al. Chemical tools for biomolecular imaging. , 2007, ACS chemical biology.
[25] S. Foster,et al. Super‐resolution microscopy reveals cell wall dynamics and peptidoglycan architecture in ovococcal bacteria , 2011, Molecular microbiology.
[26] Ned S. Wingreen,et al. Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy , 2009, PLoS biology.
[27] Mark Bates,et al. Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy , 2008, Science.
[28] Dylan T Burnette,et al. Bayesian localisation microscopy reveals nanoscale podosome dynamics , 2011, Nature Methods.
[29] E. Jorgensen,et al. Molecular basis of synaptic vesicle cargo recognition by the endocytic sorting adaptor stonin 2 , 2007, The Journal of cell biology.
[30] Christian Eggeling,et al. Nanoscopy of Living Brain Slices with Low Light Levels , 2012, Neuron.
[31] S. Zeng,et al. Localization-based super-resolution microscopy with an sCMOS camera part II: experimental methodology for comparing sCMOS with EMCCD cameras. , 2012, Optics express.
[32] Shu Jia,et al. Ultra-bright Photoactivatable Fluorophores Created by Reductive Caging , 2012, Nature Methods.
[33] S. Manley,et al. Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging , 2012, Proceedings of the National Academy of Sciences.
[34] Akihiro Kusumi,et al. Hierarchical organization of the plasma membrane: Investigations by single‐molecule tracking vs. fluorescence correlation spectroscopy , 2010, FEBS letters.
[35] J. Lippincott-Schwartz,et al. Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells. , 2010, Journal of the American Chemical Society.
[36] Christian Eggeling,et al. Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[37] Regine Hengge,et al. Principles of c-di-GMP signalling in bacteria , 2009, Nature Reviews Microbiology.
[38] Christian Eggeling,et al. A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching , 2011, Nature Biotechnology.
[39] T. Bonhoeffer,et al. Live-cell imaging of dendritic spines by STED microscopy , 2008, Proceedings of the National Academy of Sciences.
[40] B. Katz,et al. Release of Acetylcholine from a Nerve Terminal by Electric Pulses of Variable Strength and Duration , 1965, Nature.
[41] Mark Bates,et al. Multicolor Super-Resolution Imaging with Photo-Switchable Fluorescent Probes , 2007, Science.
[42] Travis J Gould,et al. Superresolution imaging of multiple fluorescent proteins with highly overlapping emission spectra in living cells. , 2011, Biophysical journal.
[43] S. Hell,et al. Direct observation of the nanoscale dynamics of membrane lipids in a living cell , 2009, Nature.
[44] Helmut Grubmüller,et al. Molecular Anatomy of a Trafficking Organelle , 2006, Cell.
[45] Bridget S. Wilson,et al. Plasma membrane-associated proteins are clustered into islands attached to the cytoskeleton , 2006, Proceedings of the National Academy of Sciences.
[46] R. D'Hooge,et al. AP‐1/σ1B‐adaptin mediates endosomal synaptic vesicle recycling, learning and memory , 2010, The EMBO journal.
[47] P. Graumann,et al. Cytoskeletal elements in bacteria. , 2007, Annual review of microbiology.
[48] Samuel J. Lord,et al. Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function , 2009, Proceedings of the National Academy of Sciences.
[49] Lucy Shapiro,et al. Getting organized — how bacterial cells move proteins and DNA , 2008, Nature Reviews Microbiology.
[50] W. Moerner,et al. Single-molecule and superresolution imaging in live bacteria cells. , 2010, Cold Spring Harbor perspectives in biology.
[51] Christian Eggeling,et al. Macromolecular-scale resolution in biological fluorescence microscopy. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[52] Alessandra Cambi,et al. Nanoscale organization of the pathogen receptor DC-SIGN mapped by single-molecule high-resolution fluorescence microscopy. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.
[53] M. Hensel,et al. Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers , 2008, Cellular microbiology.
[54] H. Rigneault,et al. Fluorescence correlation spectroscopy. , 2011, Methods in molecular biology.
[55] Christian Eggeling,et al. Multicolor far-field fluorescence nanoscopy through isolated detection of distinct molecular species. , 2008, Nano letters.
[56] S. Hell,et al. Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[57] J. Lippincott-Schwartz,et al. Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.
[58] Stefan W. Hell,et al. Nanoscopy in a Living Mouse Brain , 2012, Science.
[59] E. Gratton,et al. Spatial-temporal studies of membrane dynamics: scanning fluorescence correlation spectroscopy (SFCS). , 2004, Biophysical journal.
[60] Kai Simons,et al. Lipid Rafts As a Membrane-Organizing Principle , 2010, Science.
[61] Christian Eggeling,et al. Fluorescence fluctuation spectroscopy in subdiffraction focal volumes. , 2005, Physical review letters.
[62] S. Hell. Microscopy and its focal switch , 2008, Nature Methods.
[63] Thomas S van Zanten,et al. Hotspots of GPI-anchored proteins and integrin nanoclusters function as nucleation sites for cell adhesion , 2009, Proceedings of the National Academy of Sciences.
[64] Bryant B. Chhun,et al. Super-Resolution Video Microscopy of Live Cells by Structured Illumination , 2009, Nature Methods.
[65] X. Zhuang,et al. Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells , 2010, Cell.
[66] Yong Chen,et al. NSOM/QD-based nanoscale immunofluorescence imaging of antigen-specific T-cell receptor responses during an in vivo clonal Vγ2Vδ2 T-cell expansion. , 2008, Blood.
[67] Mark Bates,et al. Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging , 2011, Nature Methods.
[68] Astrid Magenau,et al. PALM imaging and cluster analysis of protein heterogeneity at the cell surface , 2010, Journal of biophotonics.
[69] Carlo Manzo,et al. Nanoscale fluorescence correlation spectroscopy on intact living cell membranes with NSOM probes. , 2011, Biophysical journal.
[70] S W Hell,et al. STED nanoscopy reveals molecular details of cholesterol- and cytoskeleton-modulated lipid interactions in living cells. , 2011, Biophysical journal.
[71] Yong Chen,et al. Fluorescence-topographic NSOM directly visualizes peak-valley polarities of GM1/GM3 rafts in cell membrane fluctuations** This work was supported by NIH RO1 grants HL64560 (to ZWC) and RR13601 (to ZWC). Published, JLR Papers in Press, July 4, 2008. , 2008, Journal of Lipid Research.
[72] Diane S Lidke,et al. Advances in high-resolution imaging – techniques for three-dimensional imaging of cellular structures , 2012, Journal of Cell Science.
[73] Lei Zhu,et al. Faster STORM using compressed sensing , 2012, Nature Methods.
[74] Thorsten Lang,et al. Anatomy and Dynamics of a Supramolecular Membrane Protein Cluster , 2007, Science.
[75] Suliana Manley,et al. Superresolution imaging using single-molecule localization. , 2010, Annual review of physical chemistry.
[76] S. Hell,et al. Spherical nanosized focal spot unravels the interior of cells , 2008, Nature Methods.
[77] Suliana Manley,et al. A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins. , 2013, Nature chemistry.
[78] S. Hell. Far-Field Optical Nanoscopy , 2007, Science.
[79] U Valentin Nägerl,et al. STED nanoscopy of actin dynamics in synapses deep inside living brain slices. , 2011, Biophysical journal.
[80] J. Enderlein,et al. Dynamic saturation optical microscopy: employing dark-state formation kinetics for resolution enhancement. , 2010, Physical chemistry chemical physics : PCCP.
[81] Fitnat H. Yildiz,et al. Molecular Architecture and Assembly Principles of Vibrio cholerae Biofilms , 2012, Science.
[82] Taekjip Ha,et al. Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging. , 2012, Annual review of physical chemistry.
[83] Michael A Thompson,et al. Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP , 2008, Nature Methods.
[84] Stephan J. Sigrist,et al. RIM-Binding Protein, a Central Part of the Active Zone, Is Essential for Neurotransmitter Release , 2011, Science.
[85] G. Zeng,et al. NSOM/QD-Based Direct Visualization of CD3-Induced and CD28-Enhanced Nanospatial Coclustering of TCR and Coreceptor in Nanodomains in T Cell Activation , 2009, PloS one.
[86] Levi A. Gheber,et al. Domains in cell plasma membranes investigated by near-field scanning optical microscopy. , 1998, Biophysical journal.
[87] Roman Schmidt,et al. A readily retrievable pool of synaptic vesicles , 2011, Nature Neuroscience.
[88] Matthew D. Lew,et al. Three-dimensional superresolution colocalization of intracellular protein superstructures and the cell surface in live Caulobacter crescentus , 2011, Proceedings of the National Academy of Sciences.
[89] Michael J Rust,et al. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.
[90] S. Hell,et al. Stimulated emission depletion (STED) nanoscopy of a fluorescent protein-labeled organelle inside a living cell , 2008, Proceedings of the National Academy of Sciences.
[91] Dylan T Burnette,et al. Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules , 2011, Proceedings of the National Academy of Sciences.
[92] Sarah Aufmkolk,et al. Investigating cellular structures at the nanoscale with organic fluorophores. , 2013, Chemistry & biology.
[93] M. Gustafsson,et al. Subdiffraction Multicolor Imaging of the Nuclear Periphery with 3D Structured Illumination Microscopy , 2008, Science.
[94] Carla Coltharp,et al. In Vivo Structure of the E. coli FtsZ-ring Revealed by Photoactivated Localization Microscopy (PALM) , 2010, PloS one.
[95] Hayder Amin,et al. Membrane protein sequestering by ionic protein-lipid interactions , 2011, Nature.
[96] S. Singer,et al. The fluid mosaic model of the structure of cell membranes. , 1972, Science.
[97] A. Sergé,et al. Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes , 2008, Nature Methods.
[98] S. Hell,et al. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. , 1994, Optics letters.
[99] D. Owald,et al. Naked Dense Bodies Provoke Depression , 2010, The Journal of Neuroscience.
[100] Suliana Manley,et al. Photoactivatable mCherry for high-resolution two-color fluorescence microscopy , 2009, Nature Methods.
[101] T. Yeates,et al. Protein-based organelles in bacteria: carboxysomes and related microcompartments , 2008, Nature Reviews Microbiology.
[102] H Schindler,et al. Imaging of single molecule diffusion. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[103] S. Hell,et al. Nanoscale organization of nicotinic acetylcholine receptors revealed by stimulated emission depletion microscopy , 2007, Neuroscience.
[104] S. Hell,et al. Sharper low-power STED nanoscopy by time gating , 2011, Nature Methods.
[105] Alexander M Aravanis,et al. Limited numbers of recycling vesicles in small CNS nerve terminals: implications for neural signaling and vesicular cycling , 2001, Trends in Neurosciences.
[106] Felix E Schweizer,et al. The synaptic vesicle: cycle of exocytosis and endocytosis , 2006, Current Opinion in Neurobiology.
[107] W. Rensen,et al. Cell biology beyond the diffraction limit: near-field scanning optical microscopy. , 2001, Journal of cell science.
[108] S. Hell,et al. Ground-state-depletion fluorscence microscopy: A concept for breaking the diffraction resolution limit , 1995 .
[109] Mike Heilemann,et al. Live-cell super-resolution imaging with trimethoprim conjugates , 2010, Nature Methods.
[110] Hai-Tao He,et al. Dynamics in the plasma membrane: how to combine fluidity and order , 2006, The EMBO journal.
[111] D. Owald,et al. Maturation of active zone assembly by Drosophila Bruchpilot , 2009, The Journal of cell biology.
[112] Jacob Piehler,et al. Nanoscale organization of mitochondrial microcompartments revealed by combining tracking and localization microscopy. , 2012, Nano letters.
[113] C. Garner,et al. Interactions between Piccolo and the Actin/Dynamin-binding Protein Abp1 Link Vesicle Endocytosis to Presynaptic Active Zones* , 2003, Journal of Biological Chemistry.
[114] Martin Wienisch,et al. Vesicular proteins exocytosed and subsequently retrieved by compensatory endocytosis are nonidentical , 2006, Nature Neuroscience.
[115] Christian Eggeling,et al. Multicolor fluorescence nanoscopy in fixed and living cells by exciting conventional fluorophores with a single wavelength. , 2010, Biophysical journal.
[116] L. Shapiro,et al. A spindle-like apparatus guides bacterial chromosome segregation , 2010, Nature Cell Biology.
[117] Thomas S van Zanten,et al. A nanometer scale optical view on the compartmentalization of cell membranes. , 2010, Biochimica et biophysica acta.
[118] John Bechhoefer,et al. What is superresolution microscopy , 2014, 1405.1118.
[119] Leigh G. Monahan,et al. 3D-SIM Super Resolution Microscopy Reveals a Bead-Like Arrangement for FtsZ and the Division Machinery: Implications for Triggering Cytokinesis , 2012, PLoS biology.
[120] H. McMahon,et al. Mechanisms of membrane fusion: disparate players and common principles , 2008, Nature Reviews Molecular Cell Biology.
[121] S. Hell,et al. Stimulated emission depletion nanoscopy of living cells using SNAP-tag fusion proteins. , 2010, Biophysical journal.
[122] Stephan J. Sigrist,et al. Bruchpilot Promotes Active Zone Assembly, Ca2+ Channel Clustering, and Vesicle Release , 2006, Science.
[123] Joerg Bewersdorf,et al. Optical nanoscopy: from acquisition to analysis. , 2012, Annual review of biomedical engineering.
[124] B. Katz,et al. Ionic Requirements of Synaptic Transmitter Release , 1967, Nature.
[125] J. Lippincott-Schwartz,et al. High-density mapping of single-molecule trajectories with photoactivated localization microscopy , 2008, Nature Methods.
[126] H. McMahon,et al. Mechanisms of endocytosis. , 2009, Annual review of biochemistry.
[127] M. Heilemann,et al. Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. , 2008, Angewandte Chemie.
[128] S. Hell,et al. STED microscopy with continuous wave beams , 2007, Nature Methods.
[129] Michael A Thompson,et al. Super-resolution imaging of the nucleoid-associated protein HU in Caulobacter crescentus. , 2011, Biophysical journal.
[130] T. Sudhof,et al. The synaptic vesicle cycle. , 2004, Annual review of neuroscience.
[131] D. Toomre,et al. A new wave of cellular imaging. , 2010, Annual review of cell and developmental biology.
[132] J. Lippincott-Schwartz,et al. Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging. , 2009, Trends in cell biology.
[133] S. Weiss,et al. Achieving increased resolution and more pixels with Superresolution Optical Fluctuation Imaging (SOFI) , 2010, Optics express.
[134] Peter Dedecker,et al. A stroboscopic approach for fast photoactivation-localization microscopy with Dronpa mutants. , 2007, Journal of the American Chemical Society.
[135] S. Hell,et al. Two-color nanoscopy of three-dimensional volumes by 4Pi detection of stochastically switched fluorophores , 2011, Nature Methods.
[136] A. Jenei,et al. Activation-dependent clustering of the erbB2 receptor tyrosine kinase detected by scanning near-field optical microscopy. , 1999, Journal of cell science.
[137] Michael W. Davidson,et al. Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes , 2007, Proceedings of the National Academy of Sciences.
[138] Samuel T. Hess,et al. Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories , 2007, Proceedings of the National Academy of Sciences.
[139] Michael D. Mason,et al. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. , 2006, Biophysical journal.