Dual Modification of BMAL1 by SUMO2/3 and Ubiquitin Promotes Circadian Activation of the CLOCK/BMAL1 Complex

ABSTRACT Heterodimers of BMAL1 and CLOCK drive rhythmic expression of clock-controlled genes, thereby generating circadian physiology and behavior. Posttranslational modifications of BMAL1 play a key role in modulating the transcriptional activity of the CLOCK/BMAL1 complex during the circadian cycle. Recently, we demonstrated that circadian activation of the heterodimeric transcription factor is accompanied by ubiquitin-dependent proteolysis of BMAL1. Here we show that modification by SUMO localizes BMAL1 exclusively to the promyelocytic leukemia nuclear body (NB) and simultaneously promotes its transactivation and ubiquitin-dependent degradation. Under physiological conditions, BMAL1 was predominantly conjugated to poly-SUMO2/3 rather than SUMO1, and the level of these conjugates underwent rhythmic variation, peaking at times of maximum E-box-mediated circadian transcription. Interestingly, mutation of the sumoylation site (Lys259) of BMAL1 markedly inhibited both its ubiquitination and its proteasome-mediated proteolysis, and these effects were reversed by covalent attachment of SUMO3 to the C terminus of the mutant BMAL1. Consistent with this, SUSP1, a SUMO protease highly specific for SUMO2/3, abolished ubiquitination, as well as sumoylation of BMAL1, while the ubiquitin protease UBP41 blocked BMAL1 ubiquitination but induced accumulation of polysumoylated BMAL1 and its localization to the NB. Furthermore, inhibition of proteasome with MG132 elicited robust nuclear accumulation of SUMO2/3- and ubiquitin-modified BMAL1 that was restricted to the transcriptionally active stage of the circadian cycle. These results indicate that dual modification of BMAL1 by SUMO2/3 and ubiquitin is essential for circadian activation and degradation of the CLOCK/BMAL1 complex.

[1]  She Chen,et al.  Protein kinase A and casein kinases mediate sequential phosphorylation events in the circadian negative feedback loop. , 2007, Genes & development.

[2]  Paolo Sassone-Corsi,et al.  CLOCK-mediated acetylation of BMAL1 controls circadian function , 2007, Nature.

[3]  F. Melchior,et al.  Concepts in sumoylation: a decade on , 2007, Nature Reviews Molecular Cell Biology.

[4]  Rosa Bernardi,et al.  Structure, dynamics and functions of promyelocytic leukaemia nuclear bodies , 2007, Nature Reviews Molecular Cell Biology.

[5]  Mary B. Kroetz,et al.  The Yeast Hex3·Slx8 Heterodimer Is a Ubiquitin Ligase Stimulated by Substrate Sumoylation* , 2007, Journal of Biological Chemistry.

[6]  Erica S. Johnson,et al.  Ubiquitin-dependent Proteolytic Control of SUMO Conjugates* , 2007, Journal of Biological Chemistry.

[7]  Jinke Cheng,et al.  SUMO-Specific Protease 1 Is Essential for Stabilization of HIF1α during Hypoxia , 2007, Cell.

[8]  J. Zhao,et al.  Sumoylation regulates diverse biological processes , 2007, Cellular and Molecular Life Sciences.

[9]  M. Pagano,et al.  The After-Hours Mutant Reveals a Role for Fbxl3 in Determining Mammalian Circadian Period , 2007, Science.

[10]  Michele Pagano,et al.  SCFFbxl3 Controls the Oscillation of the Circadian Clock by Directing the Degradation of Cryptochrome Proteins , 2007, Science.

[11]  B. Shen,et al.  CUE domain containing 2 regulates degradation of progesterone receptor by ubiquitin–proteasome , 2007, The EMBO journal.

[12]  Sehyung Cho,et al.  Rapid activation of CLOCK by Ca2+‐dependent protein kinase C mediates resetting of the mammalian circadian clock , 2007, EMBO reports.

[13]  R. Hay,et al.  Apoptin is modified by SUMO conjugation and targeted to promyelocytic leukemia protein nuclear bodies , 2007, Oncogene.

[14]  D. Virshup,et al.  Post-translational modifications regulate the ticking of the circadian clock , 2007, Nature Reviews Molecular Cell Biology.

[15]  M. Mann,et al.  Distinct and Overlapping Sets of SUMO-1 and SUMO-2 Target Proteins Revealed by Quantitative Proteomics*S , 2006, Molecular & Cellular Proteomics.

[16]  M. Tini,et al.  SUMO-1-Dependent Allosteric Regulation of Thymine DNA Glycosylase Alters Subnuclear Localization and CBP/p300 Recruitment , 2006, Molecular and Cellular Biology.

[17]  A. Möller,et al.  Phosphorylation-dependent control of Pc2 SUMO E3 ligase activity by its substrate protein HIPK2. , 2006, Molecular cell.

[18]  B. Lee,et al.  BMAL1 Shuttling Controls Transactivation and Degradation of the CLOCK/BMAL1 Heterodimer , 2006, Molecular and Cellular Biology.

[19]  K. Wilkinson,et al.  SUSP1 antagonizes formation of highly SUMO2/3-conjugated species , 2006, The Journal of cell biology.

[20]  F. Tamanini,et al.  The BMAL1 C terminus regulates the circadian transcription feedback loop. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[21]  H. Ulrich Mutual interactions between the SUMO and ubiquitin systems: a plea of no contest. , 2005, Trends in cell biology.

[22]  Paolo Sassone-Corsi,et al.  Circadian Clock Control by SUMOylation of BMAL1 , 2005, Science.

[23]  Jingde Zhu,et al.  Stabilization of PML nuclear localization by conjugation and oligomerization of SUMO-3 , 2005, Oncogene.

[24]  R. Hay,et al.  SUMO: a history of modification. , 2005, Molecular cell.

[25]  M. Dasso,et al.  Distinct in vivo dynamics of vertebrate SUMO paralogues. , 2004, Molecular biology of the cell.

[26]  T. Kerppola,et al.  Ubiquitin-mediated fluorescence complementation reveals that Jun ubiquitinated by Itch/AIP4 is localized to lysosomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[27]  M. W. Young,et al.  Posttranscriptional and Posttranslational Regulation of Clock Genes , 2004, Journal of biological rhythms.

[28]  Erica S. Johnson,et al.  Protein modification by SUMO. , 2004, Annual review of biochemistry.

[29]  P. Pandolfi,et al.  SUMO Modification of Huntingtin and Huntington's Disease Pathology , 2004, Science.

[30]  G. Dellaire,et al.  Chromatin Contributes to Structural Integrity of Promyelocytic Leukemia Bodies through a SUMO-1-independent Mechanism* , 2004, Journal of Biological Chemistry.

[31]  Paul S. Freemont,et al.  Promyelocytic leukemia nuclear bodies associate with transcriptionally active genomic regions , 2004, The Journal of cell biology.

[32]  M. Dasso,et al.  SUMO-2/3 regulates topoisomerase II in mitosis , 2003, The Journal of cell biology.

[33]  A. Dejean,et al.  Nuclear and unclear functions of SUMO , 2003, Nature Reviews Molecular Cell Biology.

[34]  M. Antoch,et al.  BMAL1-dependent circadian oscillation of nuclear CLOCK: posttranslational events induced by dimerization of transcriptional activators of the mammalian clock system. , 2003, Genes & development.

[35]  Chang‐Deng Hu,et al.  Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis , 2003, Nature Biotechnology.

[36]  M. Muratani,et al.  How the ubiquitin–proteasome system controls transcription , 2003, Nature Reviews Molecular Cell Biology.

[37]  Boris Pfander,et al.  RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO , 2002, Nature.

[38]  S. Reppert,et al.  Coordination of circadian timing in mammals , 2002, Nature.

[39]  S. H. Baek,et al.  Versatile protein tag, SUMO: Its enzymology and biological function , 2002, Journal of cellular physiology.

[40]  Steven M. Reppert,et al.  Posttranslational Mechanisms Regulate the Mammalian Circadian Clock , 2001, Cell.

[41]  M. Tatham,et al.  Polymeric Chains of SUMO-2 and SUMO-3 Are Conjugated to Protein Substrates by SAE1/SAE2 and Ubc9* , 2001, The Journal of Biological Chemistry.

[42]  S. H. Baek,et al.  A New SUMO-1-specific Protease, SUSP1, That Is Highly Expressed in Reproductive Organs* , 2000, The Journal of Biological Chemistry.

[43]  H. Saitoh,et al.  Functional Heterogeneity of Small Ubiquitin-related Protein Modifiers SUMO-1 versus SUMO-2/3* , 2000, The Journal of Biological Chemistry.

[44]  A Yasui,et al.  Photic induction of mPer1 and mPer2 in cry-deficient mice lacking a biological clock. , 1999, Science.

[45]  C. Weitz,et al.  Light-independent role of CRY1 and CRY2 in the mammalian circadian clock. , 1999, Science.

[46]  Steven M Reppert,et al.  mCRY1 and mCRY2 Are Essential Components of the Negative Limb of the Circadian Clock Feedback Loop , 1999, Cell.

[47]  R. Hay,et al.  SUMO-1 modification of IkappaBalpha inhibits NF-kappaB activation. , 1998, Molecular cell.

[48]  S. H. Baek,et al.  Molecular Cloning of a Novel Ubiquitin-specific Protease, UBP41, with Isopeptidase Activity in Chick Skeletal Muscle* , 1997, The Journal of Biological Chemistry.

[49]  U. Schibler Circadian time keeping: the daily ups and downs of genes, cells, and organisms. , 2006, Progress in brain research.

[50]  Michael J Rust,et al.  References and Notes Supporting Online Material Materials and Methods Figs. S1 to S8 Tables S1 to S3 References Ordered Phosphorylation Governs Oscillation of a Three-protein Circadian Clock , 2022 .