Approaching clinical proteomics: Current state and future fields of application in cellular proteomics
暂无分享,去创建一个
Helmut E Meyer | Michael Neumaier | Rolf Apweiler | Attila Tárnok | Knut Reinert | Hans-Werner Mewes | Gerd Schmitz | Marius Ueffing | Charalampos Aslanidis | Thomas Deufel | Andreas Gerstner | Jens Hansen | Dennis Hochstrasser | Roland Kellner | Markus Kubicek | Friedrich Lottspeich | Edmund Maser | Stefan Müllner | Wolfgang Mutter | Peter Nollau | Hans G Nothwang | Fredrik Ponten | Andreas Radbruch | Gregor Rothe | Hannes Stockinger | Mike J Taussig | Andreas Thiel | Joachim Thiery | Günther Valet | Joel Vandekerckhove | Christoph Wagener | Oswald Wagner | H. Mewes | K. Reinert | R. Apweiler | M. Taussig | F. Pontén | M. Ueffing | O. Wagner | Andreas Radbruch | M. Neumaier | A. Thiel | H. Stockinger | G. Schmitz | G. Rothe | F. Lottspeich | R. Kellner | H. Nothwang | J. Thiery | A. Tárnok | C. Wagener | T. Deufel | H. Meyer | E. Maser | C. Aslanidis | J. Vandekerckhove | M. Kubicek | A. Gerstner | P. Nollau | S. Müllner | Jens Hansen | Dennis Hochstrasser | W. Mutter | G. Valet
[1] R. Wollman,et al. High throughput microscopy: from raw images to discoveries , 2007, Journal of Cell Science.
[2] G. Valet. Cytomics as a new potential for drug discovery. , 2006, Drug discovery today.
[3] Rolf Apweiler,et al. The Proteomics Standards Initiative , 2003, Proteomics.
[4] H. Meyer,et al. Differential analysis of phosphorylated proteins in resting and thrombin-stimulated human platelets , 2003, Analytical and bioanalytical chemistry.
[5] J. Szöllősi,et al. Cytometry of raft and caveola membrane microdomains: From flow and imaging techniques to high throughput screening assays , 2008, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[6] Neil Swainston,et al. Capture and analysis of quantitative proteomic data , 2007, Proteomics.
[7] J. Paul Robinson,et al. Integrating Cytomics and Proteomics* , 2006, Molecular & Cellular Proteomics.
[8] R. Nieuwland,et al. Microparticles in cardiovascular diseases. , 2003, Cardiovascular research.
[9] F. Sluse,et al. Mitochondrial comparative proteomics: strengths and pitfalls. , 2008, Biochimica et biophysica acta.
[10] F. Pontén,et al. Analysis of Protein Expression in Cell Microarrays: A Tool for Antibody-based Proteomics , 2006, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.
[11] R. Aebersold,et al. Lipid raft proteins and their identification in T lymphocytes. , 2004, Sub-cellular biochemistry.
[12] W. Hacke,et al. State-of-the-Art Review: Anticoagulation: The Present and Future , 2001 .
[13] F. von Eggeling,et al. Microdissecting the proteome , 2007, Proteomics.
[14] Ken Jacobson,et al. A Role for Lipid Shells in Targeting Proteins to Caveolae, Rafts, and Other Lipid Domains , 2002, Science.
[15] M M Morente,et al. TuBaFrost 4: access rules and incentives for a European tumour bank. , 2006, European journal of cancer.
[16] W. Schubert. Exploring molecular networks directly in the cell , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[17] L. Herzenberg,et al. New approaches to fluorescence compensation and visualization of FACS data. , 2004, Clinical immunology.
[18] M. Ferrari,et al. Clinical proteomics: Written in blood , 2003, Nature.
[19] J. Tissot,et al. Recent advances in blood‐related proteomics , 2005, Proteomics.
[20] A. Piccin,et al. Circulating microparticles: pathophysiology and clinical implications. , 2007, Blood reviews.
[21] S. Moestrup,et al. Identification of the hemoglobin scavenger receptor/CD163 as a natural soluble protein in plasma. , 2002, Blood.
[22] M. Peppelenbosch,et al. Single cell proteomics for personalised medicine. , 2004, Trends in molecular medicine.
[23] Philippe Amouyel,et al. Two‐dimensional maps and databases of the human macrophage proteome and secretome , 2004, Proteomics.
[24] Henri Wajcman,et al. Human erythroid cells produced ex vivo at large scale differentiate into red blood cells in vivo , 2002, Nature Biotechnology.
[25] R. Dwek,et al. Extensive analysis of the human platelet proteome by two‐dimensional gel electrophoresis and mass spectrometry , 2004, Proteomics.
[26] G. Schmitz,et al. E‐LDL and Ox‐LDL differentially regulate ceramide and cholesterol raft microdomains in human Macrophages , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[27] E. Krausz,et al. Cell-based high-content screening of small-molecule libraries. , 2007, Current opinion in chemical biology.
[28] G. Cagney,et al. Characterization of the proteins released from activated platelets leads to localization of novel platelet proteins in human atherosclerotic lesions. , 2004, Blood.
[29] A. Lamond,et al. Structure and function in the nucleus. , 1998, Science.
[30] J Philip McCoy,et al. Basic principles of flow cytometry. , 2002, Hematology/oncology clinics of North America.
[31] A. Shet. Characterizing blood microparticles: Technical aspects and challenges , 2008, Vascular health and risk management.
[32] M. Linial,et al. PROCEED: A proteomic method for analysing plasma membrane proteins in living mammalian cells. , 2003, Briefings in functional genomics & proteomics.
[33] D. Pisetsky,et al. Microparticles as mediators of cellular cross-talk in inflammatory disease , 2006, Autoimmunity.
[34] Wei-Yin Loh,et al. Classification and regression trees , 2011, WIREs Data Mining Knowl. Discov..
[35] F. Pontén,et al. Antibody-based tissue profiling as a tool for clinical proteomics , 2004, Clinical Proteomics.
[36] L. Matthews,et al. Accurate Prediction of BRCA1 and BRCA2 Heterozygous Genotype Using Expression Profiling after Induced DNA Damage , 2006, Clinical Cancer Research.
[37] Bo Mattiasson,et al. Methods in cell separations. , 2007, Advances in biochemical engineering/biotechnology.
[38] J. Fareed,et al. Small-molecule direct antithrombins: argatroban. , 2004, Best practice & research. Clinical haematology.
[39] Etienne Gagnon,et al. The Phagosome Proteome: Insight into Phagosome Functions , 2001 .
[40] H. Um,et al. Proteomic analysis of the cellular proteins induced by adaptive concentrations of hydrogen peroxide in human U937 cells , 2002, Experimental & Molecular Medicine.
[41] G. Schmitz,et al. Ezetimib influences the expression of raft‐associated antigens in human monocytes† , 2006, Cytometry Part A.
[42] J. Yates,et al. Proteomics of organelles and large cellular structures , 2005, Nature Reviews Molecular Cell Biology.
[43] R G Ashcroft,et al. Commercial high speed machines open new opportunities in high throughput flow cytometry (HTFC). , 2000, Journal of immunological methods.
[44] F. Pontén,et al. Antibody-based Proteomics for Human Tissue Profiling , 2005, Molecular & Cellular Proteomics.
[45] Rolf Apweiler,et al. Common interchange standards for proteomics data: Public availability of tools and schema. Report on the Proteomic Standards Initiative Workshop, 2nd Annual HUPO Congress, Montreal, Canada, 8–11th October 2003 , 2004, Proteomics.
[46] Kai Simons,et al. Cholesterol, lipid rafts, and disease. , 2002, The Journal of clinical investigation.
[47] G. Janossy,et al. Stabilised cellular immuno-fluorescence assay: CD45 expression as a calibration standard for human leukocytes. , 2002, Journal of immunological methods.
[48] O. Illoh,et al. Current applications of flow cytometry in the diagnosis of primary immunodeficiency diseases. , 2004, Archives of pathology & laboratory medicine.
[49] O. Perez,et al. Phospho‐proteomic immune analysis by flow cytometry: from mechanism to translational medicine at the single‐cell level , 2006, Immunological reviews.
[50] Arsi T Rosengren,et al. Proteome profiling of interleukin‐12 treated human T helper cells , 2005, Proteomics.
[51] Lennart Martens,et al. Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase , 2006, Proteomics.
[52] C. Dunphy,et al. Applications of flow cytometry and immunohistochemistry to diagnostic hematopathology. , 2004, Archives of pathology & laboratory medicine.
[53] S. Bergeson,et al. Sindbis viral-mediated expression of eGFP-dopamine D1 receptors in situ with real-time two-photon microscopic detection , 2004, Journal of Neuroscience Methods.
[54] M. Basik,et al. Microarrays as validation strategies in clinical samples: tissue and protein microarrays. , 2006, Omics : a journal of integrative biology.
[55] J. C. BurgesChristopher. A Tutorial on Support Vector Machines for Pattern Recognition , 1998 .
[56] Ruedi Aebersold,et al. Challenges and Opportunities in Proteomics Data Analysis* , 2006, Molecular & Cellular Proteomics.
[57] Giuseppe Lippi,et al. Reliability of the thrombin-generation assay in frozen-thawed platelet-rich plasma. , 2006, Clinical chemistry.
[58] Ovidiu Daescu,et al. The Human Red Blood Cell Proteome and Interactome , 2007, Experimental biology and medicine.
[59] C. D. de Koster,et al. Comparative proteomics of human endothelial cell caveolae and rafts using two‐dimensional gel electrophoresis and mass spectrometry , 2004, Electrophoresis.
[60] Martina Uray,et al. TAMEE: data management and analysis for tissue microarrays , 2007, BMC Bioinformatics.
[61] Etienne Gagnon,et al. Phagosomes are competent organelles for antigen cross-presentation , 2003, Nature.
[62] F. Pontén,et al. Towards a human proteome atlas: High‐throughput generation of mono‐specific antibodies for tissue profiling , 2005, Proteomics.
[63] G. Klöppel,et al. Application of fluorescence difference gel electrophoresis saturation labelling for the analysis of microdissected precursor lesions of pancreatic ductal adenocarcinoma , 2005, Proteomics.
[64] Attila Tarnok,et al. Cytomics goes 3D: Toward tissomics , 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[65] Attila Tárnok,et al. Comparison of immunophenotyping by slide-based cytometry and by flow cytometry. , 2006, Journal of immunological methods.
[66] Nan Zhang,et al. Lipid raft proteomics: Analysis of in‐solution digest of sodium dodecyl sulfate‐solubilized lipid raft proteins by liquid chromatography‐matrix‐assisted laser desorption/ionization tandem mass spectrometry , 2004, Proteomics.
[67] A. Michelson. Evaluation Of Platelet Function By Flow Cytometry , 2006, Pathophysiology of Haemostasis and Thrombosis.
[68] H. Meyer,et al. Two-dimensional polyacrylamide gel electrophoresis for platelet proteomics. , 2004, Methods in molecular biology.
[69] Z. Kaleem,et al. Flow cytometric analysis of lymphomas: current status and usefulness. , 2006, Archives of pathology & laboratory medicine.
[70] M. Lisanti,et al. Role of caveolae and caveolins in health and disease. , 2004, Physiological reviews.
[71] D. Hochstrasser,et al. Automatic classification of two‐dimensional gel electrophoresis pictures by heuristic clustering analysis: A step toward machine learning , 1988, Electrophoresis.
[72] F. Poirier,et al. Proteomic map and database of lymphoblastoid proteins. , 2002, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
[73] A. Mittag,et al. Iterative restaining as a pivotal tool for n‐color immunophenotyping by slide‐based cytometry , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[74] Attila Tárnok,et al. Clinical applications of laser scanning cytometry. , 2002, Cytometry.
[75] Ning Zhang,et al. High Throughput Proteome Screening for Biomarker Detection* , 2005, Molecular & Cellular Proteomics.
[76] K. Howell,et al. Membrane traffic in endocytosis: insights from cell-free assays. , 1989, Annual review of cell biology.
[77] S. Moestrup,et al. Identification of the haemoglobin scavenger receptor , 2001, Nature.
[78] R. Appel,et al. Popitam: Towards new heuristic strategies to improve protein identification from tandem mass spectrometry data , 2003, Proteomics.
[79] Paul A Johnston,et al. Requirements, features, and performance of high content screening platforms. , 2007, Methods in molecular biology.
[80] Attila Tárnok,et al. Slide‐based cytometry for cytomics—A minireview , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[81] R. Nieuwland,et al. Measuring circulating cell‐derived microparticles , 2004, Journal of thrombosis and haemostasis : JTH.
[82] Mark Girolami,et al. Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors , 2006, Neural Computation.
[83] R. Heilker. High content screening to monitor G protein-coupled receptor internalisation. , 2006, Ernst Schering Foundation symposium proceedings.
[84] Albert Sickmann,et al. The proteome of Saccharomyces cerevisiae mitochondria , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[85] B. Seliger,et al. Design of proteome‐based studies in combination with serology for the identification of biomarkers and novel targets , 2002, Proteomics.
[86] M. Mann,et al. Organellar proteomics: turning inventories into insights , 2006, EMBO reports.
[87] Etienne Gagnon,et al. Organelle proteomics: looking at less to see more. , 2003, Trends in cell biology.
[88] M. Mann,et al. Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[89] Thomas Meitinger,et al. MITOP, the mitochondrial proteome database: 2000 update , 2000, Nucleic Acids Res..
[90] U. Walter,et al. The Human Platelet Membrane Proteome Reveals Several New Potential Membrane Proteins*S , 2005, Molecular & Cellular Proteomics.
[91] M. Mann,et al. In-depth analysis of the membrane and cytosolic proteome of red blood cells. , 2006, Blood.
[92] E. Krausz,et al. High-content siRNA screening. , 2007, Molecular bioSystems.
[93] D. Hochstrasser,et al. Proteomics meets cell biology: The establishment of subcellular proteomes , 2000, Electrophoresis.
[94] Francesca M. Buffa,et al. Multiple biomarker tissue microarrays: bioinformatics and practical approaches , 2008, Cancer and Metastasis Reviews.
[95] S. Hanash,et al. Integrated Genomic and Proteomic Analysis of Signaling Pathways in Dendritic Cell Differentiation and Maturation , 2002, Annals of the New York Academy of Sciences.
[96] S. Alexander,et al. Proteomics Opens Doors to the Mechanisms of Developmentally Regulated Secretion* , 2003, Molecular & Cellular Proteomics.
[97] F. George. Microparticles in vascular diseases. , 2008, Thrombosis research.
[98] Attila Tárnok,et al. Hyperchromatic cytometry principles for cytomics using slide based cytometry , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[99] G. van den Engh,et al. High-speed cell sorting: fundamentals and recent advances. , 2003, Current opinion in biotechnology.
[100] G.B. Singh,et al. Functional proteomics with biolinguistic methods , 2005, IEEE Engineering in Medicine and Biology Magazine.
[101] T. Nielsen,et al. Tissue microarrays in clinical oncology. , 2008, Seminars in radiation oncology.
[102] D Barnett,et al. Flow cytometric quantitation of immunofluorescence intensity: problems and perspectives. European Working Group on Clinical Cell Analysis. , 1998, Cytometry.
[103] G. Schmitz,et al. Molecular defects in the ABCA1 pathway affect platelet function. , 2005, Pathophysiology of haemostasis and thrombosis.
[104] W. Hacke,et al. Anticoagulation: the present and future. , 2001, Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis.
[105] T. Veenstra,et al. Sampling and analytical strategies for biomarker discovery using mass spectrometry. , 2006, BioTechniques.
[106] Enrique Viguera,et al. Multitissue array review: a chronological description of tissue array techniques, applications and procedures. , 2006, Pathology, research and practice.
[107] E. Gratton,et al. Lipid--protein interactions revealed by two-photon microscopy and fluorescence correlation spectroscopy. , 2005, Accounts of chemical research.
[108] G. Schmitz,et al. High density lipoprotein modulates platelet function , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[109] Attila Tárnok,et al. Laser scanning cytometry in human brain slices , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[110] E. Petricoin,et al. Serum peptidome for cancer detection: spinning biologic trash into diagnostic gold. , 2005, The Journal of clinical investigation.
[111] G. Schmitz,et al. Monocyte cholesterol homeostasis correlates with the presence of detergent resistant membrane microdomains , 2007, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[112] T. Dandekar,et al. Understanding platelets , 2005, Thrombosis and Haemostasis.
[113] J. Lam,et al. Tissue Array-Based Predictions of Pathobiology, Prognosis, and Response to Treatment for Renal Cell Carcinoma Therapy , 2004, Clinical Cancer Research.
[114] A. Tárnok,et al. Potential and challenges of a human cytome project. , 2004, Journal of biological regulators and homeostatic agents.
[115] Toshio Hayashi,et al. Anticoagulant mechanism of sulfonated polyisoprenes. , 2002, Biomaterials.
[116] R. F. Cook,et al. Characterization of caveolin-rich membrane domains isolated from an endothelial-rich source: implications for human disease , 1994, The Journal of cell biology.
[117] Erik K. Malm,et al. A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics* , 2005, Molecular & Cellular Proteomics.
[118] G. Schmitz,et al. A flow cytometric screening test for detergent‐resistant surface antigens in monocytes , 2006, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[119] Denis Hochstrasser,et al. Discovery of proteins related to coronary artery disease using industrial-scale proteomics analysis of pooled plasma. , 2006, American heart journal.
[120] Anthony K. L. Leung,et al. Nucleolar proteome dynamics , 2005, Nature.
[121] D. Sgroi,et al. Proteomic analysis of ductal carcinoma of the breast using laser capture microdissection, LC-MS, and 16O/18O isotopic labeling. , 2004, Journal of proteome research.
[122] Riitta Lahesmaa,et al. Proteome characterization of human T helper 1 and 2 cells , 2004, Proteomics.
[123] A Schwartz,et al. Standardizing flow cytometry: a classification system of fluorescence standards used for flow cytometry. , 1998, Cytometry.
[124] J. Yates,et al. Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes. , 2000, Molecular biology of the cell.
[125] G. Proimos. Platelet Aggregation Inhibition with Glycoprotein IIb–IIIa Inhibitors , 2001, Journal of Thrombosis and Thrombolysis.
[126] A Tárnok,et al. Cytomics—New technologies: Towards a human cytome project , 2004, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[127] Adeline R. Whitney,et al. Maturation of Human Neutrophil Phagosomes Includes Incorporation of Molecular Chaperones and Endoplasmic Reticulum Quality Control Machinery *S , 2006, Molecular & Cellular Proteomics.