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[1]  M. Batzer,et al.  An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair. , 2009, Genomics.

[2]  M. Batzer,et al.  Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons , 2008, PloS one.

[3]  M. Batzer,et al.  L1 recombination-associated deletions generate human genomic variation , 2008, Proceedings of the National Academy of Sciences.

[4]  Hugo Y. K. Lam,et al.  Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history. , 2008, Genome research.

[5]  Dawei Li,et al.  The diploid genome sequence of an Asian individual , 2008, Nature.

[6]  Fengtang Yang,et al.  Copy number variation and evolution in humans and chimpanzees. , 2008, Genome research.

[7]  Nancy F. Hansen,et al.  Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.

[8]  H. Kazazian,et al.  Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites , 2008, Cell.

[9]  Joshua M. Korn,et al.  Integrated detection and population-genetic analysis of SNPs and copy number variation , 2008, Nature Genetics.

[10]  Joshua M. Korn,et al.  Mapping and sequencing of structural variation from eight human genomes , 2008, Nature.

[11]  J. Lupski,et al.  The complete genome of an individual by massively parallel DNA sequencing , 2008, Nature.

[12]  P. Deininger,et al.  Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. , 2008, Genome research.

[13]  Zachary A. Szpiech,et al.  Genotype, haplotype and copy-number variation in worldwide human populations , 2008, Nature.

[14]  J. Lupski,et al.  A DNA Replication Mechanism for Generating Nonrecurrent Rearrangements Associated with Genomic Disorders , 2007, Cell.

[15]  Philip M. Kim,et al.  Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome , 2007, Science.

[16]  Michael M. Murphy,et al.  IgH class switching and translocations use a robust non-classical end-joining pathway , 2007, Nature.

[17]  P. Stenson,et al.  Human Gene Mutation Database: towards a comprehensive central mutation database , 2007, Journal of Medical Genetics.

[18]  M. Batzer,et al.  Alu Recombination-Mediated Structural Deletions in the Chimpanzee Genome , 2007, PLoS genetics.

[19]  Timothy B. Stockwell,et al.  The Diploid Genome Sequence of an Individual Human , 2007, PLoS biology.

[20]  Charles Lee,et al.  Copy number variations and clinical cytogenetic diagnosis of constitutional disorders , 2007, Nature Genetics.

[21]  S. Mccarroll,et al.  Copy-number variation and association studies of human disease , 2007, Nature Genetics.

[22]  H. Kazazian,et al.  Progress in understanding the biology of the human mutagen LINE‐1 , 2007, Human mutation.

[23]  M. Batzer,et al.  Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome , 2007, Nucleic acids research.

[24]  D. Altshuler,et al.  Completing the map of human genetic variation , 2007, Nature.

[25]  Webb Miller,et al.  Mobile DNA in Old World Monkeys: A Glimpse Through the Rhesus Macaque Genome , 2007, Science.

[26]  Miriam K. Konkel,et al.  Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies. , 2007, Gene.

[27]  D. Conrad,et al.  Global variation in copy number in the human genome , 2006, Nature.

[28]  Matthew D. Dyer,et al.  Human genomic deletions mediated by recombination between Alu elements. , 2006, American journal of human genetics.

[29]  Ryan E. Mills,et al.  Recently mobilized transposons in the human and chimpanzee genomes. , 2006, American journal of human genetics.

[30]  Deepak Grover,et al.  dbRIP: A highly integrated database of retrotransposon insertion polymorphisms in humans , 2006, Human mutation.

[31]  D. Cooper,et al.  LINE-1 Endonuclease-Dependent Retrotranspositional Events Causing Human Genetic Disease: Mutation Detection Bias and Multiple Mechanisms of Target Gene Disruption , 2006, Journal of biomedicine & biotechnology.

[32]  Jerilyn A. Walker,et al.  SVA elements: a hominid-specific retroposon family. , 2005, Journal of molecular biology.

[33]  J. V. Moran,et al.  Multiple Fates of L1 Retrotransposition Intermediates in Cultured Human Cells , 2005, Molecular and Cellular Biology.

[34]  Jean L. Chang,et al.  Initial sequence of the chimpanzee genome and comparison with the human genome , 2005, Nature.

[35]  Michael Friendly,et al.  Discrete Distributions , 2005, Probability and Bayesian Modeling.

[36]  Jeffrey S. Han,et al.  Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. , 2005, Genome research.

[37]  M. Batzer,et al.  Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages , 2005, Nucleic acids research.

[38]  E. Eichler,et al.  Segmental duplications and copy-number variation in the human genome. , 2005, American journal of human genetics.

[39]  S. Boissinot,et al.  The recent evolution of human L1 retrotransposons , 2005, Cytogenetic and Genome Research.

[40]  E. Eichler,et al.  Fine-scale structural variation of the human genome , 2005, Nature Genetics.

[41]  M. Batzer,et al.  Alu retrotransposition-mediated deletion. , 2005, Journal of molecular biology.

[42]  B. Mishra,et al.  Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[43]  Peter D Stenson,et al.  Meta‐Analysis of gross insertions causing human genetic disease: Novel mutational mechanisms and the role of replication slippage , 2005, Human Mutation.

[44]  P. Simmonds,et al.  Allelic Variation of HERV-K(HML-2) Endogenous Retroviral Elements in Human Populations , 2004, Journal of Molecular Evolution.

[45]  C. Desmaze,et al.  Impact of the KU80 pathway on NHEJ-induced genome rearrangements in mammalian cells. , 2004, Molecular cell.

[46]  Jinchuan Xing,et al.  Differential alu mobilization and polymorphism among the human and chimpanzee lineages. , 2004, Genome research.

[47]  Jef D. Boeke,et al.  Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes , 2004, Nature.

[48]  H. Kazazian.  Mobile Elements: Drivers of Genome Evolution , 2004, Science.

[49]  E. Eichler,et al.  An Alu transposition model for the origin and expansion of human segmental duplications. , 2003, American journal of human genetics.

[50]  E. Eichler,et al.  Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome. , 2003, Genome research.

[51]  Jef D Boeke,et al.  Human L1 element target‐primed reverse transcription in vitro , 2002, The EMBO journal.

[52]  A. Pavlícek,et al.  Length distribution of long interspersed nucleotide elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection. , 2002, Gene.

[53]  Giovanni Parmigiani,et al.  Human L1 Retrotransposition Is Associated with Genetic Instability In Vivo , 2002, Cell.

[54]  J. V. Moran,et al.  Genomic Deletions Created upon LINE-1 Retrotransposition , 2002, Cell.

[55]  J. V. Moran,et al.  DNA repair mediated by endonuclease-independent LINE-1 retrotransposition , 2002, Nature Genetics.

[56]  M. Batzer,et al.  Alu repeats and human genomic diversity , 2002, Nature Reviews Genetics.

[57]  P. Stankiewicz,et al.  Genome architecture, rearrangements and genomic disorders. , 2002, Trends in genetics : TIG.

[58]  E. Ostertag,et al.  Biology of mammalian L1 retrotransposons. , 2001, Annual review of genetics.

[59]  E. Ostertag,et al.  Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. , 2001, Genome research.

[60]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[61]  M. Nachman,et al.  Estimate of the mutation rate per nucleotide in humans. , 2000, Genetics.

[62]  M. Batzer,et al.  Alu repeats and human disease. , 1999, Molecular genetics and metabolism.

[63]  I. Kanazawa,et al.  An ancient retrotransposal insertion causes Fukuyama-type congenital muscular dystrophy , 1998, Nature.

[64]  J. V. Moran,et al.  The impact of L1 retrotransposons on the human genome , 1998, Nature Genetics.

[65]  M. Jasin,et al.  Homology-directed repair is a major double-strand break repair pathway in mammalian cells. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[66]  Jef D Boeke,et al.  Human L1 Retrotransposon Encodes a Conserved Endonuclease Required for Retrotransposition , 1996, Cell.

[67]  J. Haber,et al.  Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae , 1996, Molecular and cellular biology.

[68]  T. Eickbush,et al.  Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition , 1993, Cell.

[69]  S. Antonarakis,et al.  Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man , 1988, Nature.

[70]  G. Grimaldi,et al.  Defining the beginning and end of KpnI family segments. , 1984, The EMBO journal.

[71]  Carolyn J. Brown,et al.  A comprehensive analysis of common copy-number variations in the human genome. , 2007, American journal of human genetics.

[72]  M. Batzer,et al.  Mobile DNA elements in primate and human evolution. , 2007, American journal of physical anthropology.

[73]  Richard Cordaux,et al.  Estimating the retrotransposition rate of human Alu elements. , 2006, Gene.

[74]  A. Kiltie,et al.  DNA double strand break repair in human bladder cancer is error prone and involves microhomology-associated end-joining. , 2004, Nucleic acids research.

[75]  M. Batzer,et al.  Comprehensive Analysis of Two Alu Yd Subfamilies , 2003, Journal of Molecular Evolution.

[76]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[77]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[78]  LSU Digital Commons LSU Digital Commons Reading between the LINEs: Human genomic variation induced by Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition LINE-1 retrotransposition , 2022 .