论文信息 - Applying GIFT, a Gene Interactions Finder in Text, to fly literature

Applying GIFT, a Gene Interactions Finder in Text, to fly literature

UNLABELLED A number of freely available text mining tools have been put together to extract highly reliable Drosophila gene interaction data from text. The system has been tested with The Interactive Fly, showing low recall (27-34%), but very high precision (93-97%). AVAILABILITY The extracted data and a web interface for submission of texts to GIFT analysis are available at http://gift.cryst.bbk.ac.uk/gift CONTACT n.domedel_puig@cryst.bbk.ac.uk SUPPLEMENTARY INFORMATION Additional documentation, such as the dictionaries and the reference sets, are available at the GIFT website.

Lorenz Wernisch | Núria Domedel-Puig

[1] Miguel A. Andrade-Navarro,et al. Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions , 1999, ISMB.

[2] T. Brody,et al. The Interactive Fly: gene networks, development and the Internet. , 1999, Trends in Genetics.

[3] Helmut Schmidt,et al. Probabilistic part-of-speech tagging using decision trees , 1994 .

[4] The FlyBase database of the Drosophila genome projects and community literature. , 2003, Nucleic acids research.

[5] Alfonso Valencia,et al. Critical Assessment of Information Extraction Systems in Biology , 2003, Comparative and functional genomics.

[6] L. Hood,et al. A Genomic Regulatory Network for Development , 2002, Science.

[7] A. J. Schroeder,et al. The FlyBase database of the Drosophila Genome Projects and community literature. , 2002, Nucleic acids research.

[8] Lorenz Wernisch,et al. Reconstruction of gene networks using Bayesian learning and manipulation experiments , 2004, Bioinform..

[9] Oliver Christ,et al. A Modular and Flexible Architecture for an Integrated Corpus Query System , 1994, ArXiv.

[10] Denys Proux,et al. A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions , 2000, ISMB.