Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution.

[1]  C. Feschotte,et al.  A role for host–parasite interactions in the horizontal transfer of transposons across phyla , 2010, Nature.

[2]  D. A. Gomes,et al.  Inheritance of DNA Transferred from American Trypanosomes to Human Hosts , 2010, PloS one.

[3]  D. Petrov,et al.  The adaptive role of transposable elements in the Drosophila genome. , 2009, Gene.

[4]  Claudia M. A. Carareto,et al.  Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila , 2009, BMC Evolutionary Biology.

[5]  Dawn H. Nagel,et al.  The B73 Maize Genome: Complexity, Diversity, and Dynamics , 2009, Science.

[6]  M. Batzer,et al.  The impact of retrotransposons on human genome evolution , 2009, Nature Reviews Genetics.

[7]  E. Eichler,et al.  The origins and impact of primate segmental duplications. , 2009, Trends in genetics : TIG.

[8]  Eugene V Koonin,et al.  The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum , 2009, Biology Direct.

[9]  Ellen J. Pritham.  Transposable elements and factors influencing their success in eukaryotes. , 2009, The Journal of heredity.

[10]  Gene W. Yeo,et al.  L1 retrotransposition in human neural progenitor cells , 2009, Nature.

[11]  D. W. Zeh,et al.  Transposable elements and an epigenetic basis for punctuated equilibria , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

[12]  Keith R. Oliver,et al.  Transposable elements: powerful facilitators of evolution , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

[13]  E. Ostertag,et al.  L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism. , 2009, Genes & development.

[14]  I. Arkhipova,et al.  A Single-Copy IS5-Like Transposon in the Genome of a Bdelloid Rotifer , 2009, Molecular biology and evolution.

[15]  B. Piégu,et al.  Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae , 2009, BMC Evolutionary Biology.

[16]  X. Maside,et al.  Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes , 2009, Genome Biology.

[17]  T. Eickbush,et al.  The Pattern of R2 Retrotransposon Activity in Natural Populations of Drosophila simulans Reflects the Dynamic Nature of the rDNA Locus , 2009, PLoS genetics.

[18]  S. Carroll,et al.  Deep homology and the origins of evolutionary novelty , 2009, Nature.

[19]  Thomas Walker,et al.  Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti , 2009, BMC Genomics.

[20]  J. Finnerty,et al.  Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers , 2009, BMC Evolutionary Biology.

[21]  H. Möller,et al.  Evolution of prokaryotic SPFH proteins , 2009, BMC Evolutionary Biology.

[22]  M. Halfon,et al.  Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster , 2009, BMC Genomics.

[23]  J. Werren,et al.  MODES OF ACQUISITION OF WOLBACHIA: HORIZONTAL TRANSFER, HYBRID INTROGRESSION, AND CODIVERGENCE IN THE NASONIA SPECIES COMPLEX , 2009, Evolution; international journal of organic evolution.

[24]  B. Haas,et al.  Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps , 2008, Genome Biology.

[25]  Marlen S. Clark,et al.  Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods , 2008, Proceedings of the National Academy of Sciences.

[26]  P. Keeling,et al.  Horizontal gene transfer in eukaryotic evolution , 2008, Nature Reviews Genetics.

[27]  L. J. Johnson.  Selfish Genetic Elements Favor The Evolution of a Distinction Between Soma and Germline , 2008, Evolution; international journal of organic evolution.

[28]  P. Capy,et al.  Revisiting horizontal transfer of transposable elements in Drosophila , 2008, Heredity.

[29]  T. Eickbush,et al.  The diversity of retrotransposons and the properties of their reverse transcriptases. , 2008, Virus research.

[30]  S. Takagi,et al.  The Tol1 element of the medaka fish, a member of the hAT transposable element family, jumps in Caenorhabditis elegans , 2008, Heredity.

[31]  D. Ray,et al.  Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. , 2008, Genome research.

[32]  C. Feschotte.  Transposable elements and the evolution of regulatory networks , 2008, Nature Reviews Genetics.

[33]  D. A. Kramerov,et al.  Bov-B-mobilized SINEs in vertebrate genomes. , 2008, Gene.

[34]  C. Feschotte,et al.  DNA transposons and the evolution of eukaryotic genomes. , 2007, Annual review of genetics.

[35]  R. Wing,et al.  Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. , 2007, The Plant journal : for cell and molecular biology.

[36]  Arnaud Le Rouzic,et al.  Long-term evolution of transposable elements , 2007, Proceedings of the National Academy of Sciences.

[37]  J. Bennetzen,et al.  A unified classification system for eukaryotic transposable elements , 2007, Nature Reviews Genetics.

[38]  H. Levin,et al.  The Hermes Transposon of Musca domestica Is an Efficient Tool for the Mutagenesis of Schizosaccharomyces pombe , 2007, Genetics.

[39]  S. Richards,et al.  Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes , 2007, Science.

[40]  N. Okada,et al.  Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals , 2007, Proceedings of the National Academy of Sciences.

[41]  Eduardo P C Rocha,et al.  Causes of insertion sequences abundance in prokaryotic genomes. , 2007, Molecular biology and evolution.

[42]  C. Feschotte,et al.  The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. , 2007, Genome research.

[43]  W. Doolittle,et al.  Inaugural Article: Pattern pluralism and the Tree of Life hypothesis , 2007 .

[44]  Alexander Emelyanov,et al.  Trans-Kingdom Transposition of the Maize Dissociation Element , 2006, Genetics.

[45]  J. Volff.  Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

[46]  P. Bennett,et al.  ISCR Elements: Novel Gene-Capturing Systems of the 21st Century? , 2006, Microbiology and Molecular Biology Reviews.

[47]  M. Batzer,et al.  Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[48]  S. Schaeffer,et al.  The ornithine decarboxylase gene of Trypanosoma brucei: Evidence for horizontal gene transfer from a vertebrate source. , 2006, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[49]  Eugene V. Koonin,et al.  Introns and the origin of nucleus–cytosol compartmentalization , 2006, Nature.

[50]  Stéphane Boissinot,et al.  Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. , 2005, Genome research.

[51]  Laura S. Frost,et al.  Mobile genetic elements: the agents of open source evolution , 2005, Nature Reviews Microbiology.

[52]  Min Han,et al.  Efficient Transposition of the piggyBac (PB) Transposon in Mammalian Cells and Mice , 2005, Cell.

[53]  M. Morgante,et al.  Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize , 2005, Nature Genetics.

[54]  B. Charlesworth,et al.  High rate of horizontal transfer of transposable elements in Drosophila. , 2005, Trends in genetics : TIG.

[55]  P. Capy,et al.  The First Steps of Transposable Elements Invasion , 2005, Genetics.

[56]  N. Okada,et al.  SINEs of speciation: tracking lineages with retroposons. , 2004, Trends in ecology & evolution.

[57]  Sean R. Eddy,et al.  Pack-MULE transposable elements mediate gene evolution in plants , 2004, Nature.

[58]  C. Feschotte.  Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences. , 2004, Molecular biology and evolution.

[59]  J. Galagan,et al.  RIP: the evolutionary cost of genome defense. , 2004, Trends in genetics : TIG.

[60]  M. Pardue,et al.  Retrotransposons provide an evolutionarily robust non-telomerase mechanism to maintain telomeres. , 2003, Annual review of genetics.

[61]  Ronald H. A. Plasterk,et al.  Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi , 2003, Nature.

[62]  Keith M. Derbyshire,et al.  The outs and ins of transposition: from Mu to Kangaroo , 2003, Nature Reviews Molecular Cell Biology.

[63]  F. Bushman.  Targeting Survival Integration Site Selection by Retroviruses and LTR-Retrotransposons , 2003, Cell.

[64]  Z. Tu,et al.  Possible horizontal transfer of a transposable element from host to parasitoid. , 2001, Molecular biology and evolution.

[65]  N. Moran,et al.  Deletional bias and the evolution of bacterial genomes. , 2001, Trends in genetics : TIG.

[66]  D. Kordis,et al.  Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons. , 2001, Molecular biology and evolution.

[67]  M. Stroun,et al.  Alu Repeat Sequences Are Present in Increased Proportions Compared to a Unique Gene in Plasma/Serum DNA , 2001, Annals of the New York Academy of Sciences.

[68]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[69]  C. Weil,et al.  Transposition of maize Ac/Ds transposable elements in the yeast Saccharomyces cerevisiae , 2000, Nature Genetics.

[70]  M. G. Kidwell,et al.  Horizontal transfer and selection in the evolution of P elements. , 2000, Molecular biology and evolution.

[71]  S. Henikoff,et al.  Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. , 2000, Genome research.

[72]  M. Pritchett,et al.  In vivo transposon mutagenesis of the methanogenic archaeon Methanosarcina acetivorans C2A using a modified version of the insect mariner-family transposable element Himar1. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[73]  R. Plasterk,et al.  Resident aliens: the Tc1/mariner superfamily of transposable elements. , 1999, Trends in genetics : TIG.

[74]  T. Eickbush,et al.  The age and evolution of non-LTR retrotransposable elements. , 1999, Molecular biology and evolution.

[75]  J. Mekalanos,et al.  In vivo transposition of mariner-based elements in enteric bacteria and mycobacteria. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[76]  T. Heidmann,et al.  Taming of transposable elements by homology-dependent gene silencing , 1999, Nature Genetics.

[77]  D. Kordis,et al.  Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[78]  J. Vlak,et al.  Horizontal Escape of the Novel Tc1-Like Lepidopteran Transposon TCp3.2 into Cydia pomonella Granulovirus , 1998, Journal of Molecular Evolution.

[79]  M. Freeling,et al.  Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element family. , 1995, The Plant cell.

[80]  S. Martin,et al.  Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[81]  D. Rio,et al.  Soma-specific expression and cloning of PSI, a negative regulator of P element pre-mRNA splicing. , 1995, Genes & development.

[82]  Wolfgang Stephan,et al.  The evolutionary dynamics of repetitive DNA in eukaryotes , 1994, Nature.

[83]  J. Boeke,et al.  An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. , 1994, Genes & development.

[84]  M. Houck,et al.  Possible horizontal transfer of Drosophila genes by the mite Proctolaelaps regalis , 1991, Science.

[85]  M. Nissen,et al.  Gene organization and transcription of TED, a lepidopteran retrotransposon integrated within the baculovirus genome , 1990, Molecular and cellular biology.

[86]  M. G. Kidwell,et al.  Evidence for horizontal transmission of the P transposable element between Drosophila species. , 1990, Genetics.

[87]  D. Anxolabéhère,et al.  Molecular characteristics of diverse populations are consistent with the hypothesis of a recent invasion of Drosophila melanogaster by mobile P elements. , 1988, Molecular biology and evolution.

[88]  S. W. Emmons,et al.  High-frequency excision of transposable element Tc1 in the nematode caenorhabditis elegans is limited to somatic cells , 1984, Cell.

[89]  R M May,et al.  Epidemiology and genetics in the coevolution of parasites and hosts , 1983, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[90]  M. Summers,et al.  Acquisition of Host Cell DNA Sequences by Baculoviruses: Relationship Between Host DNA Insertions and FP Mutants of Autographa californica and Galleria mellonella Nuclear Polyhedrosis Viruses , 1983, Journal of virology.

[91]  D. Hickey.  Selfish DNA: a sexually-transmitted nuclear parasite. , 1982, Genetics.

[92]  F. Crick,et al.  Selfish DNA: the ultimate parasite , 1980, Nature.

[93]  S. Boissinot,et al.  Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. , 2010, Gene.

[94]  N. Vinckenbosch,et al.  RNA-based gene duplication: mechanistic and evolutionary insights , 2009, Nature Reviews Genetics.

[95]  R. Lapointe,et al.  In vitro integration of an ichnovirus genome segment into the genomic DNA of lepidopteran cells. , 2007, The Journal of general virology.

[96]  S. Boissinot,et al.  L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. , 2004, Trends in genetics : TIG.

[97]  Jonathan B. Clark,et al.  Factors that affect the horizontal transfer of transposable elements. , 2004, Current issues in molecular biology.

[98]  M. G. Kidwell.  Horizontal transfer of P elements and other short inverted repeat transposons , 2004, Genetica.

[99]  J. Brookfield,et al.  Population genetics models of transposable elements , 2004, Genetica.

[100]  B. Webb,et al.  Perspectives on polydnavirus origins and evolution. , 2002, Advances in virus research.

[101]  H. Robertson.  Evolution of DNA Transposons in Eukaryotes , 2002 .

[102]  Alan M. Lambowitz,et al.  Mobile DNA III , 2002 .

[103]  D. Hartl,et al.  Modern thoughts on an ancyent marinere: function, evolution, regulation. , 1997, Annual review of genetics.

[104]  D. Anxolabéhère,et al.  The strange phylogenies of transposable elements: are horizontal transfers the only explantation? , 1994, Trends in genetics : TIG.