Simplification of Reaction Networks, Confluence and Elementary Modes
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Joachim Niehren | Guillaume Madelaine | Cédric Lhoussaine | Elisa Tonello | Joachim Niehren | Elisa Tonello | Cédric Lhoussaine | Guillaume Madelaine
[1] Hiroaki Kitano,et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models , 2003, Bioinform..
[2] Chou Kuo-Chen,et al. Graphical rules of steady-state reaction systems , 1981 .
[3] H. M. Tsuchiya,et al. On the mathematical status of the pseudo-steady state hypothesis of biochemical kinetics☆ , 1967 .
[4] Paul A. Bates,et al. Mathematical modeling identifies Smad nucleocytoplasmic shuttling as a dynamic signal-interpreting system , 2008, Proceedings of the National Academy of Sciences.
[5] Joachim Niehren,et al. Qualitative Reasoning for Reaction Networks with Partial Kinetic Information , 2015, CMSB.
[6] Mirabelle Nebut,et al. Rule-based modeling of transcriptional attenuation at the tryptophan operon , 2009, Proceedings of the 2009 Winter Simulation Conference (WSC).
[7] L. Segel,et al. On the validity of the steady state assumption of enzyme kinetics. , 1988, Bulletin of mathematical biology.
[8] Alexander N Gorban,et al. Reduction of dynamical biochemical reactions networks in computational biology , 2012, Front. Gene..
[9] Joachim Niehren,et al. Attractor Equivalence: An Observational Semantics for Reaction Networks , 2014, FMMB.
[10] E. Seibert,et al. Fundamentals of enzyme kinetics. , 2014, Methods in molecular biology.
[11] L. A. Segel,et al. The Quasi-Steady-State Assumption: A Case Study in Perturbation , 1989, SIAM Rev..
[12] Joachim Niehren,et al. Structural simplification of chemical reaction networks in partial steady states , 2016, Biosyst..
[13] Sarah M. Keating,et al. BioModels: Content, Features, Functionality, and Use , 2015, CPT: pharmacometrics & systems pharmacology.
[14] E. L. King,et al. A Schematic Method of Deriving the Rate Laws for Enzyme-Catalyzed Reactions , 1956 .
[15] M. Feinberg. Chemical reaction network structure and the stability of complex isothermal reactors—I. The deficiency zero and deficiency one theorems , 1987 .
[16] Steffen Klamt,et al. Computation of elementary modes: a unifying framework and the new binary approach , 2004, BMC Bioinformatics.
[17] François Fages,et al. Inferring reaction systems from ordinary differential equations , 2015, Theor. Comput. Sci..
[18] Jörg Stülke,et al. SubtiWiki—a comprehensive community resource for the model organism Bacillus subtilis , 2011, Nucleic Acids Res..
[19] Elisenda Feliu,et al. Graphical reduction of reaction networks by linear elimination of species , 2015, Journal of mathematical biology.
[20] Claudine Chaouiya,et al. Petri net modelling of biological networks , 2007, Briefings Bioinform..
[21] François Fages,et al. BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge , 2006, Bioinform..
[22] Joachim Niehren,et al. Observational program calculi and the correctness of translations , 2015, Theor. Comput. Sci..