Chromophore-assisted laser inactivation – towards a spatiotemporal–functional analysis of proteins, and the ablation of chromatin, organelle and cell function
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[1] K. Mikoshiba,et al. Dynactin is essential for growth cone advance. , 2008, Biochemical and biophysical research communications.
[2] Hiroshi Suzuki,et al. SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation , 2013, Scientific Reports.
[3] J. Christie,et al. Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin. , 2000, Biochemistry.
[4] R Y Tsien,et al. Specific covalent labeling of recombinant protein molecules inside live cells. , 1998, Science.
[5] A. Jeromin,et al. Regulation of neurite outgrowth mediated by neuronal calcium sensor-1 and inositol 1,4,5-trisphosphate receptor in nerve growth cones , 2009, Neuroscience.
[6] Kazuyoshi Itoh,et al. In vivo manipulation of fluorescently labeled organelles in living cells by multiphoton excitation. , 2008, Journal of biomedical optics.
[7] H. Vogel,et al. A general method for the covalent labeling of fusion proteins with small molecules in vivo , 2003, Nature Biotechnology.
[8] A S Verkman,et al. Green fluorescent protein‐based halide indicators with improved chloride and iodide affinities , 2001, FEBS letters.
[9] Randall J. Platt,et al. Optical Control of Mammalian Endogenous Transcription and Epigenetic States , 2013, Nature.
[10] Komal Rambani,et al. Culturing thick brain slices: An interstitial 3D microperfusion system for enhanced viability , 2009, Journal of Neuroscience Methods.
[11] J. Flannery,et al. AAV-Mediated, Optogenetic Ablation of Müller Glia Leads to Structural and Functional Changes in the Mouse Retina , 2013, PloS one.
[12] V. Massey. The chemical and biological versatility of riboflavin. , 2000, Biochemical Society transactions.
[13] Hideo Tanaka,et al. Multiphoton excitation–evoked chromophore-assisted laser inactivation using green fluorescent protein , 2005, Nature Methods.
[14] Andreas S Bommarius,et al. Reactive oxygen species in photochemistry of the red fluorescent protein "Killer Red". , 2011, Chemical communications.
[15] Eric A. Vitriol,et al. Enhanced EGFP-chromophore-assisted laser inactivation using deficient cells rescued with functional EGFP-fusion proteins , 2007, Proceedings of the National Academy of Sciences.
[16] Kazuyoshi Itoh,et al. Single-organelle tracking by two-photon conversion. , 2007, Optics express.
[17] Eric A. Vitriol,et al. Instantaneous inactivation of cofilin reveals its function of F-actin disassembly in lamellipodia , 2013, Molecular biology of the cell.
[18] Roger Y. Tsien,et al. Photo-inducible cell ablation in Caenorhabditis elegans using the genetically encoded singlet oxygen generating protein miniSOG , 2012, Proceedings of the National Academy of Sciences.
[19] D. Bourgeois,et al. Structural basis for the phototoxicity of the fluorescent protein KillerRed , 2009, FEBS letters.
[20] D. Bouvard,et al. β1A Integrin Is a Master Regulator of Invadosome Organization and Function , 2010, Molecular biology of the cell.
[21] Andrea H. Brand,et al. An actomyosin-based barrier inhibits cell mixing at compartmental boundaries in Drosophila embryos , 2010, Nature Cell Biology.
[22] D. Tautz,et al. Elimination of EVE protein by CALI in the short germ band insect Tribolium suggests a conserved pair-rule function for even skipped , 1999, Mechanisms of Development.
[23] Kazuyoshi Itoh,et al. Intracellular disruption of mitochondria in a living HeLa cell with a 76-MHz femtosecond laser oscillator. , 2005, Optics express.
[24] Fumio Nakamura,et al. Cartilage Acidic Protein–1B (LOTUS), an Endogenous Nogo Receptor Antagonist for Axon Tract Formation , 2011, Science.
[25] Y. Goshima,et al. Localized role of CRMP1 and CRMP2 in neurite outgrowth and growth cone steering , 2012, Developmental neurobiology.
[26] H. Keshishian,et al. Laser inactivation of fasciclin I disrupts axon adhesion of grasshopper pioneer neurons , 1990, Nature.
[27] Chaoran Jing,et al. Chemical tags for labeling proteins inside living cells. , 2011, Accounts of chemical research.
[28] Catherine Proenza,et al. The protein-labeling reagent FLASH-EDT2 binds not only to CCXXCC motifs but also non-specifically to endogenous cysteine-rich proteins , 2001, Pflügers Archiv.
[29] A. Verkman,et al. Light inactivation of water transport and protein–protein interactions of aquaporin–Killer Red chimeras , 2012, The Journal of general physiology.
[30] P. De Camilli,et al. Essential Function of Dynamin in the Invasive Properties and Actin Architecture of v-Src Induced Podosomes/Invadosomes , 2013, PloS one.
[31] G. Davis,et al. Transgenically Encoded Protein Photoinactivation (FlAsH-FALI) Acute Inactivation of Synaptotagmin I , 2002, Neuron.
[32] Marina V Shirmanova,et al. Phototoxic effects of lysosome-associated genetically encoded photosensitizer KillerRed , 2013, Journal of biomedical optics.
[33] K. Jacobson,et al. Mechanism of chromophore assisted laser inactivation employing fluorescent proteins. , 2009, Analytical Chemistry.
[34] J. Ellenberg,et al. Chromophore-assisted laser inactivation of alpha- and gamma-tubulin SNAP-tag fusion proteins inside living cells. , 2009, ACS chemical biology.
[35] M. Field,et al. Diffusion pathways of oxygen species in the phototoxic fluorescent protein Killer Red , 2010, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
[36] M. Chalfie. GREEN FLUORESCENT PROTEIN , 1995, Photochemistry and photobiology.
[37] A. Miyawaki,et al. Chromophore-assisted light inactivation of HaloTag fusion proteins labeled with eosin in living cells. , 2011, ACS chemical biology.
[38] R. Terns,et al. CRISPR-based technologies: prokaryotic defense weapons repurposed. , 2014, Trends in genetics : TIG.
[39] Avinash Bhandoola,et al. Faculty Opinions recommendation of In vivo genome editing using a high-efficiency TALEN system. , 2013 .
[40] S. Lukyanov,et al. Genetically Encoded Immunophotosensitizer 4D5scFv-miniSOG is a Highly Selective Agent for Targeted Photokilling of Tumor Cells In Vitro , 2013, Theranostics.
[41] D. Jans,et al. The Biarsenical Dye Lumio™ Exhibits a Reduced Ability to Specifically Detect Tetracysteine-Containing Proteins Within Live Cells , 2007, Journal of Fluorescence.
[42] P. Agostinis,et al. Mitochondria are targets for peroxisome-derived oxidative stress in cultured mammalian cells. , 2013, Free radical biology & medicine.
[43] Konstantin A Lukyanov,et al. Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed , 2006, Nature Protocols.
[44] S. Nakajima,et al. Novel method for site-specific induction of oxidative DNA damage reveals differences in recruitment of repair proteins to heterochromatin and euchromatin , 2013, Nucleic acids research.
[45] Alina P. Ryumina,et al. Flavoprotein miniSOG as a genetically encoded photosensitizer for cancer cells. , 2013, Biochimica et biophysica acta.
[46] Diane S Lidke,et al. Advances in high-resolution imaging – techniques for three-dimensional imaging of cellular structures , 2012, Journal of Cell Science.
[47] Sadegh Nabavi,et al. Optogenetic Inhibition of Synaptic Release with Chromophore-Assisted Light Inactivation (CALI) , 2013, Neuron.
[48] P. Carpentier,et al. GFP-like phototransformation mechanisms in the cytotoxic fluorescent protein KillerRed unraveled by structural and spectroscopic investigations. , 2012, Journal of the American Chemical Society.
[49] Marina V Shirmanova,et al. Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice , 2013, Journal of biophotonics.
[50] Brent R. Martin,et al. Mammalian cell–based optimization of the biarsenical-binding tetracysteine motif for improved fluorescence and affinity , 2005, Nature Biotechnology.
[51] D. Jay,et al. Selective destruction of protein function by chromophore-assisted laser inactivation. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[52] A. Cortajarena,et al. Singlet oxygen generation by the genetically encoded tag miniSOG. , 2013, Journal of the American Chemical Society.
[53] Sachihiro Matsunaga,et al. Development of a multistage classifier for a monitoring system of cell activity based on imaging of chromosomal dynamics , 2007, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[54] M. Landthaler,et al. Singlet oxygen generation by UVA light exposure of endogenous photosensitizers. , 2006, Biophysical journal.
[55] A. Wlodawer,et al. Structural Basis for Phototoxicity of the Genetically Encoded Photosensitizer KillerRed* , 2009, The Journal of Biological Chemistry.
[56] Y. Tsujimoto,et al. Deleterious effects of mitochondrial ROS generated by KillerRed photodynamic action in human cell lines and C. elegans. , 2012, Journal of photochemistry and photobiology. B, Biology.
[57] D G Jay,et al. Chromophore-assisted laser inactivation of proteins is mediated by the photogeneration of free radicals. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[58] E. Thiel,et al. Toward Understanding the Mechanism of Chromophore-assisted Laser Inactivation—Evidence for the Primary Photochemical Steps¶ , 2005, Photochemistry and photobiology.
[59] Kazuyoshi Itoh,et al. Femtosecond laser disruption of subcellular organelles in a living cell. , 2004, Optics express.
[60] D. Tautz,et al. Chromophore-assisted laser inactivation of even skipped in Drosophila precisely phenocopies genetic loss of function , 1996, Development Genes and Evolution.
[61] Z. Liao,et al. A genetically-encoded KillerRed protein as an intrinsically generated photosensitizer for photodynamic therapy. , 2014, Biomaterials.
[62] Katalin Tóth,et al. Positioning Effects of KillerRed inside of Cells correlate with DNA Strand Breaks after Activation with Visible Light , 2011, International journal of medical sciences.
[63] Dong Zheng,et al. Positive selection vector using the KillerRed gene. , 2011, Analytical biochemistry.
[64] Konstantin A Lukyanov,et al. A genetically encoded photosensitizer , 2006, Nature Biotechnology.
[65] K. Oka,et al. A method for selective ablation of neurons in C. elegans using the phototoxic fluorescent protein, KillerRed , 2013, Neuroscience Letters.
[66] V. Choubey,et al. Mutant A53T α-Synuclein Induces Neuronal Death by Increasing Mitochondrial Autophagy* , 2011, The Journal of Biological Chemistry.
[67] P. Bryant,et al. Progress towards understanding the nature of chromatid breakage , 2004, Cytogenetic and Genome Research.
[68] Markus Sauer,et al. Localization microscopy coming of age: from concepts to biological impact , 2013, Journal of Cell Science.
[69] Elena V. Zagaynova,et al. Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein. , 2011, The Biochemical journal.
[70] Roger Y Tsien,et al. Genetically targeted chromophore-assisted light inactivation , 2003, Nature Biotechnology.
[71] Mason R. Mackey,et al. Molecular Composition and Ultrastructure of the Caveolar Coat Complex , 2013, PLoS biology.
[72] S. Matsunaga,et al. New insights into the dynamics of plant cell nuclei and chromosomes. , 2013, International review of cell and molecular biology.
[73] Eric A. Vitriol,et al. Chromophore-assisted laser inactivation in cell biology. , 2008, Trends in cell biology.
[74] K. Wood,et al. HaloTag7: a genetically engineered tag that enhances bacterial expression of soluble proteins and improves protein purification. , 2009, Protein expression and purification.
[75] M. Elowitz,et al. Chromophore-assisted light inactivation and self-organization of microtubules and motors. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[76] A. Ojida,et al. Peptide tag/probe pairs based on the coordination chemistry for protein labeling. , 2014, Inorganic chemistry.
[77] P. Kim,et al. ROS-induced mitochondrial depolarization initiates PARK2/PARKIN-dependent mitochondrial degradation by autophagy , 2012, Autophagy.
[78] Hang Lu,et al. Rapid and permanent neuronal inactivation in vivo via subcellular generation of reactive oxygen with the use of KillerRed. , 2013, Cell reports.
[79] Mason R. Mackey,et al. A Small Novel A-Kinase Anchoring Protein (AKAP) That Localizes Specifically Protein Kinase A-Regulatory Subunit I (PKA-RI) to the Plasma Membrane* , 2012, The Journal of Biological Chemistry.
[80] W. M. Westler,et al. Chemical structure of the hexapeptide chromophore of the Aequorea green-fluorescent protein. , 1993, Biochemistry.
[81] A. Buchstaller,et al. Micro‐scale chromophore‐assisted laser inactivation of nerve growth cone proteins , 2000, Microscopy research and technique.
[82] C. Brees,et al. Potential limitations in the use of KillerRed for fluorescence microscopy , 2012, Journal of microscopy.
[83] Jean-Paul Concordet,et al. Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair , 2014, Genome research.
[84] C. Barbas,et al. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. , 2013, Trends in biotechnology.
[85] Takashi Sakurai,et al. Ephrin-A5 restricts topographically specific arborization in the chick retinotectal projection in vivo , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[86] R. Schier,et al. Fluorophore‐assisted light inactivation: A high‐throughput tool for direct target validation of proteins , 2002, Proteomics.
[87] Daniela Boassa,et al. Mapping the Subcellular Distribution of α-Synuclein in Neurons using Genetically Encoded Probes for Correlated Light and Electron Microscopy: Implications for Parkinson's Disease Pathogenesis , 2013, The Journal of Neuroscience.
[88] A. Mallavarapu,et al. Fasciclin I and II have distinct roles in the development of grasshopper pioneer neurons , 1993, Neuron.
[89] A. Linstedt,et al. Irradiation-induced protein inactivation reveals Golgi enzyme cycling to cell periphery , 2012, Journal of Cell Science.
[90] Frederico M. Pimenta,et al. Oxygen‐Dependent Photochemistry and Photophysics of “MiniSOG,” a Protein‐Encased Flavin , 2013, Photochemistry and photobiology.
[91] B. Eustace,et al. Chromophore-assisted laser inactivation. , 2007, Methods in cell biology.
[92] Ethan K. Scott,et al. Filtering of Visual Information in the Tectum by an Identified Neural Circuit , 2010, Science.
[93] Cathleen Teh,et al. The Habenula Prevents Helpless Behavior in Larval Zebrafish , 2010, Current Biology.
[94] A. Linstedt,et al. Isoform-specific tethering links the Golgi ribbon to maintain compartmentalization , 2014, Molecular biology of the cell.
[95] A. Nairn,et al. Regulation of neurite outgrowth mediated by localized phosphorylation of protein translational factor eEF2 in growth cones , 2013, Developmental neurobiology.
[96] Y. Ho,et al. Intraperoxisomal redox balance in mammalian cells: oxidative stress and interorganellar cross-talk , 2011, Molecular biology of the cell.
[97] K. Fukui,et al. RBMX: a regulator for maintenance and centromeric protection of sister chromatid cohesion. , 2012, Cell reports.
[98] F. Bonhoeffer,et al. Chromophore-assisted laser inactivation of a repulsive axonal guidance molecule , 1996, Current Biology.
[99] Sachihiro Matsunaga,et al. Application of visualization techniques for cell and tissue engineering. , 2013, Journal of bioscience and bioengineering.
[100] W. Yang,et al. Spatiotemporally controlled initiation of Parkin-mediated mitophagy within single cells , 2011, Autophagy.
[101] Dong Zheng,et al. T vector bearing KillerRed protein marker for red/white cloning screening. , 2010, Analytical biochemistry.
[102] Yishi Jin,et al. Position of UNC-13 in the active zone regulates synaptic vesicle release probability and release kinetics , 2013, eLife.
[103] Ken Jacobson,et al. Dissecting the link between stress fibres and focal adhesions by CALI with EGFP fusion proteins , 2002, Nature Cell Biology.
[104] Ericka B. Ramko,et al. A Genetically Encoded Tag for Correlated Light and Electron Microscopy of Intact Cells, Tissues, and Organisms , 2011, PLoS biology.
[105] J. Dekker,et al. The hierarchy of the 3D genome. , 2013, Molecular cell.