The UCSC Genome Browser Database: update 2006
暂无分享,去创建一个
Terrence S. Furey | David Haussler | Brian J. Raney | Jakob Skou Pedersen | Galt P. Barber | Hiram Clawson | Mark Diekhans | Donna Karolchik | Kate R. Rosenbloom | Ann S. Zweig | W. James Kent | Gill Bejerano | Adam C. Siepel | Robert M. Kuhn | Rachel A. Harte | Fan Hsu | Daryl J. Thomas | Heather Trumbower | Andy Pohl | Robert Baertsch | R. J. Weber | Kayla E. Smith | Angela S. Hinrichs | Charles W. Sugnet | Jennifer Hillman-Jackson | A. Sultan-Qurraie | M. Weirauch | D. Haussler | M. Diekhans | R. Harte | W. J. Kent | C. Sugnet | T. Furey | Daryl J. Thomas | M. Weirauch | R. Baertsch | K. Rosenbloom | H. Clawson | A. Siepel | G. Bejerano | J. S. Pedersen | A. Hinrichs | H. Trumbower | A. Zweig | G. Barber | R. Kuhn | D. Karolchik | B. Raney | F. Hsu | R. Weber | Jennifer Hillman-Jackson | A. Pohl | A. Sultan-Qurraie | J. Hillman-Jackson | D. Thomas | W. Kent | A. Sultan-Qurraie | Heather Trumbower
[1] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[2] R. Guigó,et al. GeneID in Drosophila. , 2000, Genome research.
[3] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[4] Michael Q. Zhang,et al. Computational identification of promoters and first exons in the human genome , 2001, Nature Genetics.
[5] Elizabeth M. Smigielski,et al. dbSNP: the NCBI database of genetic variation , 2001, Nucleic Acids Res..
[6] R. Guigó,et al. SGP-1: prediction and validation of homologous genes based on sequence alignments. , 2001, Genome research.
[7] B. Trask,et al. Segmental duplications: organization and impact within the current human genome project assembly. , 2001, Genome research.
[8] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[9] A. Orth,et al. Large-scale analysis of the human and mouse transcriptomes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[10] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[11] D. Haussler,et al. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[12] Alexander E. Kel,et al. TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..
[13] D. Haussler,et al. Human-mouse alignments with BLASTZ. , 2003, Genome research.
[14] M. Brent,et al. Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. , 2003, Genome research.
[15] Richard J. Roberts,et al. REBASE: restriction enzymes and methyltransferases , 2003, Nucleic Acids Res..
[16] Terrence S. Furey,et al. The UCSC Genome Browser Database , 2003, Nucleic Acids Res..
[17] Kenny Q. Ye,et al. Large-Scale Copy Number Polymorphism in the Human Genome , 2004, Science.
[18] Sam Griffiths-Jones,et al. The microRNA Registry , 2004, Nucleic Acids Res..
[19] Cyrus Chothia,et al. The SUPERFAMILY database in 2004: additions and improvements , 2004, Nucleic Acids Res..
[20] Ryan D. Morin,et al. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). , 2004, Genome research.
[21] Susumu Goto,et al. The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..
[22] Emily Dimmer,et al. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology , 2004, Nucleic Acids Res..
[23] Paul T. Groth,et al. The ENCODE (ENCyclopedia Of DNA Elements) Project , 2004, Science.
[24] Burkhard Morgenstern,et al. AUGUSTUS: a web server for gene finding in eukaryotes , 2004, Nucleic Acids Res..
[25] S. Batalov,et al. A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[26] J. Rinn,et al. Major molecular differences between mammalian sexes are involved in drug metabolism and renal function. , 2004, Developmental cell.
[27] Kara Dolinski,et al. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms , 2004, Nucleic Acids Res..
[28] D. Haussler,et al. Aligning multiple genomic sequences with the threaded blockset aligner. , 2004, Genome research.
[29] Terrence S. Furey,et al. The UCSC Table Browser data retrieval tool , 2004, Nucleic Acids Res..
[30] L. Feuk,et al. Detection of large-scale variation in the human genome , 2004, Nature Genetics.
[31] Robert D. Finn,et al. The Pfam protein families database , 2004, Nucleic Acids Res..
[32] D. Haussler,et al. Exploring relationships and mining data with the UCSC Gene Sorter. , 2005, Genome research.
[33] Richard J. Roberts,et al. REBASE—restriction enzymes and DNA methyltransferases , 2004, Nucleic Acids Res..
[34] Michel J. Weber. New human and mouse microRNA genes found by homology search , 2004, The FEBS journal.
[35] Cathy H. Wu,et al. InterPro, progress and status in 2005 , 2004, Nucleic Acids Res..
[36] Lincoln Stein,et al. Reactome: a knowledgebase of biological pathways , 2004, Nucleic Acids Res..
[37] E. Eichler,et al. Segmental duplications and copy-number variation in the human genome. , 2005, American journal of human genetics.
[38] M. Gerstein,et al. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability , 2005, Nucleic acids research.
[39] D. Haussler,et al. Computational screening of conserved genomic DNA in search of functional noncoding elements , 2005, Nature Methods.
[40] Tatiana A. Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[41] E. Eichler,et al. Fine-scale structural variation of the human genome , 2005, Nature Genetics.
[42] Damian Smedley,et al. Ensembl 2005 , 2004, Nucleic Acids Res..
[43] Peter D. Karp,et al. Querying and computing with BioCyc databases , 2005, Bioinform..
[44] D. Haussler,et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. , 2005, Genome research.
[45] Namshin Kim,et al. ECgene: genome-based EST clustering and gene modeling for alternative splicing. , 2005, Genome research.
[46] Madeline A. Crosby,et al. FlyBase: genes and gene models , 2004, Nucleic Acids Res..
[47] Kimberly Van Auken,et al. WormBase: a comprehensive data resource for Caenorhabditis biology and genomics , 2004, Nucleic Acids Res..
[48] James G. R. Gilbert,et al. The vertebrate genome annotation (Vega) database , 2004, Nucleic Acids Res..
[49] G. Helt,et al. Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution , 2005, Science.
[50] Qing Zhang,et al. The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema , 2004, Nucleic Acids Res..
[51] David Haussler,et al. The UCSC Proteome Browser , 2004, Nucleic Acids Res..
[52] Marc A. Martí-Renom,et al. MODBASE: a database of annotated comparative protein structure models and associated resources , 2005, Nucleic Acids Res..
[53] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[54] Cathy H. Wu,et al. The Universal Protein Resource (UniProt) , 2006, Nucleic Acids Research.