A global view of regulatory networks in lung cancer: An approach to understand homogeneity and heterogeneity.

[1]  A. Baryshnikova.  Exploratory Analysis of Biological Networks through Visualization, Clustering, and Functional Annotation in Cytoscape. , 2016, Cold Spring Harbor protocols.

[2]  G. Ferbeyre,et al.  STAT5A is regulated by DNA damage via the tumor suppressor p53. , 2016, Cytokine.

[3]  A. Kundaje,et al.  An Arntl2-Driven Secretome Enables Lung Adenocarcinoma Metastatic Self-Sufficiency. , 2016, Cancer cell.

[4]  D. Demetrick,et al.  Integrating text mining, data mining, and network analysis for identifying genetic breast cancer trends , 2016, BMC Research Notes.

[5]  Anirban Dutta,et al.  CompNet: a GUI based tool for comparison of multiple biological interaction networks , 2016, BMC Bioinformatics.

[6]  M. Breslin,et al.  Ectopic expression of a small cell lung cancer transcription factor, INSM1 impairs alveologenesis in lung development , 2016, BMC Pulmonary Medicine.

[7]  W. Lam,et al.  Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma , 2016, Oncotarget.

[8]  B. Zilberstein,et al.  Genomics, microRNA, epigenetics, and proteomics for future diagnosis, treatment and monitoring response in upper GI cancers , 2016, Clinical and Translational Medicine.

[9]  G. Firestone,et al.  Cooperative antiproliferative signaling by aspirin and indole-3-carbinol targets microphthalmia-associated transcription factor gene expression and promoter activity in human melanoma cells , 2016, Cell Biology and Toxicology.

[10]  F. Liu,et al.  miRNA-204 suppresses human non-small cell lung cancer by targeting ATF2 , 2016, Tumor Biology.

[11]  Jiadong Ren,et al.  Mining frequent biological sequences based on bitmap without candidate sequence generation , 2016, Comput. Biol. Medicine.

[12]  Jian-Ying Gu,et al.  New future of cell biology and toxicology: thinking deeper , 2016, Cell Biology and Toxicology.

[13]  Feng-Chi Chen,et al.  Functional divergence and convergence between the transcript network and gene network in lung adenocarcinoma , 2016, OncoTargets and therapy.

[14]  H. Kölbl,et al.  HER Specific TKIs Exert Their Antineoplastic Effects on Breast Cancer Cell Lines through the Involvement of STAT5 and JNK , 2016, PloS one.

[15]  Núria Queralt-Rosinach,et al.  DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases , 2015, bioRxiv.

[16]  P. Claudio,et al.  Clinical potential of gene mutations in lung cancer , 2015, Clinical and Translational Medicine.

[17]  Radhakrishnan Sabarinathan,et al.  Nucleotide excision repair is impaired by binding of transcription factors to DNA , 2015, Nature.

[18]  Jing Yang,et al.  The human disease network in terms of dysfunctional regulatory mechanisms , 2015, Biology Direct.

[19]  D. Deng,et al.  The transcription factor c-Fos coordinates with histone lysine-specific demethylase 2A to activate the expression of cyclooxygenase-2 , 2015, Oncotarget.

[20]  Yina Lin,et al.  Siomycin A Induces Apoptosis in Human Lung Adenocarcinoma A549 Cells by Suppressing the Expression of FoxM1 , 2015, Natural product communications.

[21]  Lingyan Wang,et al.  Roles of CEACAM1 in cell communication and signaling of lung cancer and other diseases , 2015, Cancer and Metastasis Reviews.

[22]  Xiangtian Yu,et al.  Unravelling personalized dysfunctional gene network of complex diseases based on differential network model , 2015, Journal of Translational Medicine.

[23]  Lingyan Wang,et al.  Targeting roles of inflammatory microenvironment in lung cancer and metastasis , 2015, Cancer and Metastasis Reviews.

[24]  Niko Välimäki,et al.  CTCF/cohesin-binding sites are frequently mutated in cancer , 2015, Nature Genetics.

[25]  Xiangdong Wang,et al.  Regulatory T cells and potential inmmunotherapeutic targets in lung cancer , 2015, Cancer and Metastasis Reviews.

[26]  Xiangdong Wang,et al.  Global analyses of subtype- or stage-specific genes on chromosome 7 in patients with lung cancer , 2015, Cancer and Metastasis Reviews.

[27]  Y. Ling,et al.  Allosteric therapies for lung cancer , 2015, Cancer and Metastasis Reviews.

[28]  A. Adjei,et al.  Lung cancer and metastasis: new opportunities and challenges , 2015, Cancer and Metastasis Reviews.

[29]  Jian Wang,et al.  Global analysis of chromosome 1 genes among patients with lung adenocarcinoma, squamous carcinoma, large-cell carcinoma, small-cell carcinoma, or non-cancer , 2015, Cancer and Metastasis Reviews.

[30]  Xiangdong Wang,et al.  Application of clinical bioinformatics in lung cancer-specific biomarkers , 2015, Cancer and Metastasis Reviews.

[31]  Lin Shi,et al.  Five critical elements to ensure the precision medicine , 2015, Cancer and Metastasis Reviews.

[32]  Jian Wang,et al.  Global analyses of Chromosome 17 and 18 genes of lung telocytes compared with mesenchymal stem cells, fibroblasts, alveolar type II cells, airway epithelial cells, and lymphocytes , 2015, Biology Direct.

[33]  C. Garbisu,et al.  Early gene expression in Pseudomonas fluorescens exposed to a polymetallic solution , 2015, Cell Biology and Toxicology.

[34]  Zhihua Liu,et al.  MiRNA-1469 promotes lung cancer cells apoptosis through targeting STAT5a. , 2015, American journal of cancer research.

[35]  Martin A. M. Reijns,et al.  Lagging strand replication shapes the mutational landscape of the genome , 2015, Nature.

[36]  Dawei Li,et al.  FOXM1 Promotes Lung Adenocarcinoma Invasion and Metastasis by Upregulating SNAIL , 2015, International journal of biological sciences.

[37]  B. Leiby,et al.  Inhibition of Stat5a/b Enhances Proteasomal Degradation of Androgen Receptor Liganded by Antiandrogens in Prostate Cancer , 2014, Molecular Cancer Therapeutics.

[38]  Xu-dong Yang,et al.  Correlation of c-fos protein expression with neuropeptide content in the lung of bronchial asthmatic rat. , 2014, International journal of clinical and experimental pathology.

[39]  Tim Angus,et al.  Visualisation of BioPAX Networks using BioLayout Express 3D , 2014, F1000Research.

[40]  Thomas C. Wiegers,et al.  The Comparative Toxicogenomics Database's 10th year anniversary: update 2015 , 2014, Nucleic Acids Res..

[41]  Luonan Chen,et al.  Network biomarkers, interaction networks and dynamical network biomarkers in respiratory diseases , 2014, Clinical and Translational Medicine.

[42]  K. Aihara,et al.  Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers , 2014, Medicinal research reviews.

[43]  Weidong Wu,et al.  Transcriptional and posttranscriptional regulation and endocytosis were involved in zinc oxide nanoparticle-induced interleukin-8 overexpression in human bronchial epithelial cells , 2014, Cell Biology and Toxicology.

[44]  Rui Zhang,et al.  Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer , 2013, BMC Systems Biology.

[45]  Gary D. Bader,et al.  GeneMANIA Prediction Server 2013 Update , 2013, Nucleic Acids Res..

[46]  J. Xiong,et al.  miR-149 Inhibits Non-Small-Cell Lung Cancer Cells EMT by Targeting FOXM1 , 2013, Biochemistry research international.

[47]  C. Bai,et al.  FoxM1 Is Associated with Poor Prognosis of Non-Small Cell Lung Cancer Patients through Promoting Tumor Metastasis , 2013, PloS one.

[48]  Alessandra Montecucco,et al.  CorrelaGenes: a new tool for the interpretation of the human transcriptome , 2012, BMC Bioinformatics.

[49]  G. A. Stringer,et al.  Low levels of Stat5a protein in breast cancer are associated with tumor progression and unfavorable clinical outcomes , 2012, Breast Cancer Research.

[50]  Nadezhda T. Doncheva,et al.  Topological analysis and interactive visualization of biological networks and protein structures , 2012, Nature Protocols.

[51]  Leland Wilkinson.  Exact and Approximate Area-Proportional Circular Venn and Euler Diagrams , 2012, IEEE Transactions on Visualization and Computer Graphics.

[52]  John D. Minna,et al.  Divergent Genomic and Epigenomic Landscapes of Lung Cancer Subtypes Underscore the Selection of Different Oncogenic Pathways during Tumor Development , 2011, PloS one.

[53]  Ibrahim Emam,et al.  ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments , 2010, Nucleic Acids Res..

[54]  L. Giménez,et al.  Multiplexed methylation profiles of tumor suppressor genes and clinical outcome in lung cancer , 2010, Journal of Translational Medicine.

[55]  A. El-Kadi,et al.  Transcriptional and posttranscriptional regulation of CYP1A1 by vanadium in human hepatoma HepG2 cells , 2010, Cell Biology and Toxicology.

[56]  Jonathan M. Garibaldi,et al.  ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization , 2009, BMC Bioinformatics.

[57]  Philippe Broët,et al.  Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: implications for chemotherapy selection. , 2009, Cancer research.

[58]  A. Mortazavi,et al.  Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.

[59]  Karin Milde-Langosch,et al.  The Fos family of transcription factors and their role in tumourigenesis. , 2005, European journal of cancer.

[60]  H. J. Kim,et al.  Preferential elevation of Prx I and Trx expression in lung cancer cells following hypoxia and in human lung cancer tissues , 2003, Cell Biology and Toxicology.

[61]  T. Curran,et al.  c-fos protein can induce cellular transformation: A novel mechanism of activation of a cellular oncogene , 1984, Cell.

[62]  Tanya Barrett,et al.  The Gene Expression Omnibus Database , 2016, Statistical Genomics.

[63]  Concetto Spampinato,et al.  Combining literature text mining with microarray data: advances for system biology modeling , 2012, Briefings Bioinform..

[64]  Susumu Goto,et al.  The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..

[65]  Andrei L. Turinsky,et al.  Bioinformatics Applications Note Systems Biology Orthonets: Simultaneous Visual Analysis of Orthologs and Their Interaction Neighborhoods across Different Organisms , 2022 .